The semantic view of theories is normally considered to be an ac-count of theories congenial to Scientific Realism. Recently, it has been argued that Ontic Structural Realism could be fruitfully applied, in combination with the semantic view, to some of the philosophical issues peculiarly related to bi-ology. Given the central role that models have in the semantic view, and the relevance that mathematics has in the definition of the concept of model, the fo-cus will be on population genetics, which is (...) one of the most mathematized areas in biology. We will analyse some of the difficulties which arise when trying to use Ontic Structural Realism to account for evolutionary biology. (shrink)

In this chapter I consider what recent work on background independent physics can do for structuralism, and what structuralism can do for background independent physics. I focus on the problems of time and observables in gravitational physics. The ‘frozen’ character of the observables of general relativity is usually considered to constitute a serious problem for the theory. I argue that by invoking correlations between physical quantities we can provide a natural explanation of the appear- ance of time and change in (...) timeless structures. I argue that this response can resolve a problem with Max Tegmark’s ‘extreme structuralist’ position. I then consider what bearing the mathematical representation used has on the debate over the nature of structure in discussions of structural realism. I argue that it has both the resources to ground the notion of structure in physics and to answer the ‘no relations without relata’ objection. (shrink)

Category theory has become central to certain aspects of theoretical physics. Bain has recently argued that this has significance for ontic structural realism. We argue against this claim. In so doing, we uncover two pervasive forms of category-theoretic generalization. We call these ‘generalization by duality’ and ‘generalization by categorifying physical processes’. We describe in detail how these arise, and explain their significance using detailed examples. We show that their significance is two-fold: the articulation of high-level physical concepts, and the generation (...) of new models. 1 Introduction2 Categories and Structuralism 2.1 Categories: abstract and concrete 2.2 Structuralism: simple and ontic3 Bain’s Two Strategies 3.1 A first strategy for defending Objectless 3.2 A second strategy for defending Objectless4 Two Forms of Categorical Generalization 4.1 Generalization by duality 4.2 Generalization by categorification 4.3 The role of category theory in physics5 Conclusion. (shrink)

In this paper I argue that it is finally time to move beyond the Nagelian framework and to break new ground in thinking about epistemic reduction in biology. I will do so, not by simply repeating all the old objections that have been raised against Ernest Nagel’s classical model of theory reduction. Rather, I grant that a proponent of Nagel’s approach can handle several of these problems but that, nevertheless, Nagel’s general way of thinking about epistemic reduction in terms of (...) theories and their logical relations is entirely inadequate with respect to what is going on in actual biological research practice. (shrink)

In their recent book, Ladyman and Wiesner (What is a complex system?, Yale University Press, 2020) delineate the bounds of the exciting interdisciplinary field of complexity science. In this work, they provide examples of generally accepted complex systems and common features which these possess to varying degrees. In this paper, I plan to extend their list to include the formal study of natural language, i.e. linguistics. In fact, I will argue that language exhibits many of the hallmarks of a complex (...) system, specifically a complex biological system. Thus, my aim is to advocate contra the the ‘Minimalist Program’ (Chomsky, The minimalist program, MIT Press, Cambridge, 1995), which motivates simple underlying mechanisms (i.e. Merge) in their idealisations, that biolinguistics should embrace a ‘Maximalist Program’ in which multiple subfields contribute component explanations to an emerging whole. (shrink)

Linguistics as a science has rapidly changed during the course of a relatively short period. The mathematical foundations of the science, however, present a different story below the surface. In this paper, I argue that due to the former, the seismic shifts in theory over the past 80 years opens linguistics up to the problem of pessimistic meta-induction or radical theory change. I further argue that, due to the latter, one current solution to this problem in the philosophy of science, (...) namely structural realism :403–424, 1998; French in Proc Aristot Soc 106:167–185, 2006), should be viewed as especially enticing for linguists, as their field is a largely structural enterprise. I discuss particular historical instances of theory change in generative syntax before investigating two views on the nature of structural properties and eventually proposing an approach in terms of invariance :162–186, 2015) as a grounding for structural realism in the history and philosophy of linguistics. (shrink)

Empirical philosophers of science aim to base their philosophical theories on observations of scientific practice. But since there is far too much science to observe it all, how can we form and test hypotheses about science that are sufficiently rigorous and broad in scope, while avoiding the pitfalls of bias and subjectivity in our methods? Part of the answer, we claim, lies in the computational tools of the digital humanities, which allow us to analyze large volumes of scientific literature. Here (...) we advocate for the use of these methods by addressing a number of large-scale, justificatory concerns—specifically, about the epistemic value of journal articles as evidence for what happens elsewhere in science, and about the ability of DH tools to extract this evidence. Far from ignoring the gap between scientific literature and the rest of scientific practice, effective use of DH tools requires critical reflection about these relationships. (shrink)

Although scientific realism is the default position in the life sciences, philosophical accounts of realism are geared towards physics and run into trouble when applied to fields such as biology or neuroscience. In this paper, I formulate a new robustness-based version of entity realism, and show that it provides a plausible account of realism for the life sciences that is also continuous with scientific practice. It is based on the idea that if there are several independent ways of measuring, detecting (...) or deriving something, then we are justified in believing that it is real. I also consider several possible objections to robustness-based entity realism, discuss its relationship to ontic structural realism, and show how it has the potential to provide a novel response to the pessimistic induction argument. (shrink)

Natural kinds, real kinds, or, following J.S Mill simply, Kinds, are thought to be an important asset for scientific realists in the non-fundamental (or “special”) sciences. Essential natures are less in vogue. I show that the realist would do well to couple her Kinds with essential natures in order to strengthen their epistemic and ontological credentials. I argue that these essential natures need not however be intrinsic to the Kind’s members; they may be historical. I concentrate on assessing the merits (...) of historical essential natures in a paradigm case of Kinds in the non-fundamental sciences: species. I specify two basic jobs for essential natures: 1) offering individuation criteria, and 2) providing a causal explanation of the Kind’s multiple projectable properties. I argue that at least in the case of species historical essences are fit for both tasks. The principled resistance to Kinds with historical essences should also be cleared. (shrink)

We argue that the economy of nature constitutes an invocation of structure in the biological sciences, one largely missed by philosophers of biology despite the turn in recent years toward structural explanations throughout the philosophy of science. We trace a portion of the history of this concept, beginning with the theologically and economically grounded work of Linnaeus, moving through Darwin’s adaptation of the economy of nature and its reconstitution in genetic terms during the first decades of the Modern Synthesis. What (...) this historical case study reveals, we argue, is a window into the shifting landscape of the explanatory and ontic uses of structural concepts. In Linnaeus, the economy of nature has both ontic and explanatory import; in Darwin the ontic and explanatory aspects start to come apart ; and finally, in the Modern Synthesis, the economy of nature is replaced by the conceptual toolkit of population genetics, the structural elements of which are nearly entirely explanatory. Having traced a historical trajectory of structural concepts that moves from an ontic formulation to an increasingly explanatory one, we conclude by outlining some insights for structural realism. (shrink)

First, I answer the controversial question ’What is scientific realism?’ with extensive reference to the varied accounts of the position in the literature. Second, I provide an overview of the key developments in the debate concerning scientific realism over the past decade. Third, I provide a summary of the other contributions to this special issue.

Biological individuality is a major topic of discussion in biology and philosophy of biology. Recently, several objections have been raised against traditional accounts of biological individuality, including the objections of monism, theory-centrism, ahistoricity, disciplinary isolationism, and the multiplication of conceptual uncertainties. In this introduction, I will examine the current philosophical landscape about biological individuality, and show how the contributions gathered in this special issue address these five objections. Overall, the aim of this issue is to offer a more diverse, unifying, (...) and scientifically informed conception of what a biological individual is. (shrink)

This paper, which is based on recent empirical research at the University of Leeds, the University of Edinburgh, and the University of Bristol, presents two difficulties which arise when condensed matter physicists interact with molecular biologists: the former use models which appear to be too coarse-grained, approximate and/or idealized to serve a useful scientific purpose to the latter; and the latter have a rather narrower view of what counts as an experiment, particularly when it comes to computer simulations, than the (...) former. It argues that these findings are related; that computer simulations are considered to be undeserving of experimental status, by molecular biologists, precisely because of the idealizations and approximations that they involve. The complexity of biological systems is a key factor. The paper concludes by critically examining whether the new research programme of ‘systems biology’ offers a genuine alternative to the modelling strategies used by physicists. It argues that it does not. (shrink)

This thesis offers a naturalist revision of Alain Badiou’s philosophy. This goal is pursued through an encounter of Badiou’s mathematical ontology and theory of truth with contemporary trends in philosophy of mathematics and philosophy of science. I take issue with Badiou’s inability to elucidate the link between the empirical and the ontological, and his residual reliance on a Heideggerian project of fundamental ontology, which undermines his own immanentist principles. I will argue for both a bottom-up naturalisation of Badiou’s philosophical approach (...) to mathematics and a top-down naturalisation. Articulating my particular understanding of what realism and naturalism should commit us to, I propose a creative fusion of Badiou’s attention to metamathematical results with a structural-informational metaphysics, proposing a ‘matherialism’ uniting the more daring speculative insights of the former with the naturalist and empiricist commitments motivating the latter. (shrink)

There are realist and antirealist interpretations of the free energy principle (FEP). This paper aims to chart out a structural realist interpretation of FEP. To do so, it draws on Worrall’s (Dialectica 43(1–2): 99–124, 1989) proposal. The general insight of Worrall’s paper is that there is progress at the level of the structure of theories rather than their content. To enact Worrall’s strategy in the context of FEP, this paper will focus on characterising the formal continuity between fundamental equations of (...) thermodynamics—such as Boltzmann’s equation and Gibbs’s equation—on the one hand, and Friston’s characterisation of FEP on the other. Lack of a universal consensus on the physical character of entities that feature in thermodynamics, information theory and FEP notwithstanding, I argue that there is structural continuity and unity at the level of mathematical equations that regiment entropy, information and free energy. The existence of such structural continuity and unity provides grounds for structural realism about FEP. (shrink)

John Earman and John T. Roberts advocate a challenging and radical claim regarding the semantics of laws in the special sciences: the statistical account. According to this account, a typical special science law “asserts a certain precisely defined statistical relation among well-defined variables” and this statistical relation does not require being hedged by ceteris paribus conditions. In this paper, we raise two objections against the attempt to cash out the content of special science generalizations in statistical terms.

Linguistics as a science has rapidly changed during the course of a relatively short period. The mathematical foundations of the science, however, present a different story below the surface. In this paper, I argue that due to the former, the seismic shifts in theory over the past 80 years opens linguistics up to the problem of pessimistic meta-induction or radical theory change. I further argue that, due to the latter, one current solution to this problem in the philosophy of science, (...) namely structural realism, should be viewed as especially enticing for linguists, as their field is a largely structural enterprise. I discuss particular historical instances of theory change in generative syntax before investigating two views on the nature of structural properties and eventually proposing an approach in terms of invariance as a grounding for structural realism in the history and philosophy of linguistics. (shrink)