Observational and experimental discoveries of new factual entities such as objects, systems, or processes, are major contributors to some advances in the life sciences. Yet, whereas discovery of theories was extensively deliberated by philosophers of science, very little philosophical attention was paid to the discovery of factual entities. This paper examines historical and philosophical aspects of the experimental discovery by Carl Woese of archaea, prokaryotes that comprise one of the three principal domains of the phylogenetic tree. Borrowing Kuhn’s terminology, this (...) discovery of a major biological entity was made during a ‘normal science’ project of building molecular taxonomy for prokaryotes. Unexpectedly, however, an observed anomaly instigated the discovery of archaea. Substantiation of the existence of the new archaeal entity and consequent reconstruction of the phylogenetic tree prompted replacement of a long-held model of a prokarya and eukarya bipartite tree of life by a new model of a tripartite tree comprising of bacteria, archaea, and eukarya. This paper explores the history and philosophical implications of the progression of Woese’s project from normal science to anomaly-instigated model-changing discovery. It is also shown that the consequential discoveries of RNA splicing and of ribozymes were similarly prompted by unexpected irregularities during normal science activities. It is thus submitted that some discoveries of factual biological entities are triggered by unforeseen observational or experimental anomalies. (shrink)

This paper investigates how intuitions about scientific discovery using artificial intelligence can be used to improve our understanding of scientific discovery more generally. Traditional accounts of discovery have been agent-centred: they place emphasis on identifying a specific agent who is responsible for conducting all, or at least the important part, of a discovery process. We argue that these accounts experience difficulties capturing scientific discovery involving AI and that similar issues arise for human discovery. We propose an alternative, collective-centred view as (...) superior for understanding discovery, with and without AI. This view maintains that discovery is performed by a collective of agents and entities, each making contributions that differ in significance and character, and that attributing credit for discovery depends on various finer-grained properties of the contributions made. Detailing its conceptual resources, we argue that this view is considerably more compelling than its agent-centred alternative. Considering and responding to several theoretical and practical challenges, we point to concrete avenues for further developing the view we propose. (shrink)

Tomis Kapitan’s work on Peirce’s conception of abduction was instrumental for our coming to see how Peircean abduction both relates to and is importantly different from inference to the best explanation (IBE). However, he ultimately concluded that Peirce’s conception of abduction was a muddle. Despite the deeply problematic nature of Peirce’s theory of abduction in these respects, Kapitan’s work on Peircean abduction offers insight into the nature of abductive inquiry that is importantly relevant to the task of making sense of (...) explanatory inquiry in the sciences in general. The view developed here stems from his work and involves disambiguating three forms of inference involved in Peircean abduction in terms of Reichenbach’s and Laudan’s context models of inquiry. Importantly, this includes understanding that abduction involves the context of pursuit. (shrink)

This special issue for the Journal for General Philosophy of Science is devoted to exploring the impact and many ramifications of current research in evolutionary epistemology. Evolutionary epistemology is an inter- and multidisciplinary area of research that can be divided into two ever-inclusive research avenues. One research avenue expands on the EEM program and investigates the epistemology of evolution. The other research avenue builds on the EET program and researches the evolution of epistemology. Since its conception, EE has developed three (...) schools of thought: adaptationist, non-adaptationist, and applied EE. Although diverse in outlook and theoretical background, these research avenues and schools share the same agenda of understanding how knowledge evolves, and how it relates to the world. In this paper, we first explain wherefrom evolutionary epistemological schools of thought developed, and then we highlight current debates in EE by briefly reviewing the papers that form part of this special issue. (shrink)

This paper proposes a biosemiotic conception of theories, as non-intentional organic theories, which is based on an analysis and comparison of philosopher Norwood Russell Hanson’s account of theories and zoologist Jakob von Uexküll’s theory of organisms. It is argued that Hanson’s proposals about scientific theories and their relation to observation are semiotic in nature and that there exists a correspondence between Hanson’s depiction of the relationship between theories, observation, and reality and von Uexküll’s views on the relationship between organisms and (...) their environments. This correspondence supports an account of theories that depicts them as organic extensions of our perceptual physiology. Among the epistemological consequences of this account are the following: The kind of correspondence that is established through theories between a subject and reality is related rather to a subject’s actions than to a faithful representation of every aspect of the world, it suggests a strong emphasis on the creative aspects of knowledge acquisition, and it urges a reassessment of the evolutionary epistemology of theories. (shrink)

This monograph is an in-depth and engaging discourse on the deeply cognitive roots of human scientific quest. The process of making scientific inferences is continuous with the day-to-day inferential activity of individuals, and is predominantly inductive in nature. Inductive inference, which is fallible, exploratory, and open-ended, is of essential relevance in our incessant efforts at making sense of a complex and uncertain world around us, and covers a vast range of cognitive activities, among which scientific exploration constitutes the pinnacle. Inductive (...) inference has a personal aspect to it, being rooted in the cognitive unconscious of individuals, which has recently been found to be of paramount importance in a wide range of complex cognitive processes. One other major aspect of the process of inference making, including the making of scientific inferences, is the role of a vast web of beliefs lodged in the human mind, as also of a huge repertoire of heuristics, that constitute an important component of ‘unconscious intelligence’. Finally, human cognitive activity is dependent in a large measure on emotions and affects, that operate mostly at an unconscious level. Of special importance in scientific inferential activity is the process of hypothesis making, which is examined in this book, along with the above aspects of inductive inference, at considerable depth. The book focuses on the inadequacy of the viewpoint of naive realism in understanding the contextual nature of scientific theories, where a cumulative progress towards an ultimate truth about Nature appears to be too simplistic a generalization. It poses a critique to the commonly perceived image of science which is seen as the last word in logic and objectivity, the latter in the double sense of being independent of individual psychological propensities and, at the same time, approaching a correct understanding of the workings of a mind-independent nature. Adopting the naturalist point of view, it examines the essential tension between the cognitive endeavours of individuals and scientific communities, immersed in belief systems and cultures, on the one hand, and the engagement with a mind-independent reality on the other. In the end, science emerges as an interpretation of nature, which is perceived by us only contextually, as successively emerging cross-sections of limited scope and extent. Successive waves of theory building in science appear as episodic and kaleidoscopic changes in perspective as certain in-built borders are crossed, rather than as a cumulative progress towards some ultimate truth. While written in an informal and conversational style, the book raises a number of deep and intriguing questions located at the interface of cognitive psychology and philosophy of science, meant for both the general lay reader and the specialist. Of particular interest is the way it explores the role of belief (aided by emotions and affects) in making the process of inductive inference possible since belief is a subtle though all-pervasive cognitive factor not adequately investigated in the current literature. (shrink)

RESUMEN Un experimento mental en ciencias fácticas consiste en la representación de un escenario imaginario. A partir de la presentación de condiciones iniciales y la postulación de una situación hipotética o contrafáctica, se solicita al lector que realice mentalmente alguna operación, manipule ciertas variables o ponga en funcionamiento algún aparato o instrumento. En virtud de este ejercicio sería posible, en principio, obtener nuevo conocimiento acerca de algún aspecto del mundo natural. El debate acerca de las funciones de los experimentos mentales (...) en las ciencias fácticas está centrado en establecer la validez del conocimiento acerca del mundo empírico que estos dispositivos son capaces de proporcionar. La propuesta interpretativa de Brown da sustento a la idea de que, en casos excepcionales, los experimentos mentales pueden cumplir funciones probatorias. Los denominados “experimentos mentales platónicos” permiten intuir leyes de la naturaleza y justificar a priori las hipótesis propuestas. Sostenemos que la conexión trazada por Brown entre los experimentos mentales y leyes naturales exhibe un aspecto problemático de su filosofía: el compromiso injustificado con una metafísica inflacionaria. Mostramos que es posible explicar el mecanismo a través del cual estos dispositivos proporcionan conocimiento nuevo y dar cuenta tanto de su poder heurístico cómo de su valor evidencial a partir compromisos metafísicos más modestos. ABSTRACT Thought experiments in factual science consists on the representation of an imaginary scenario. Starting with the presentation of a hypothetical or counterfactual situation and the description of initial conditions, the reader is asked to mentally perform some operation, to manipulate certain variables or to put into operation some apparatus or instrument. In virtue of this exercise, it would be possible to obtain new knowledge about the natural world. The debate on the functions of thought experiments in physics is focused on determining the validity of the empirical knowledge that these devices are capable of providing. Brown supports the idea that, in exceptional cases, thought experiments can perform probative functions. The so-called “Platonic Thought Experiments” allow us to intuit laws of nature and provide an a priori justification of the proposed hypotheses. We hold that Brown's connection between thought experiments and laws of nature exhibits a problematic aspect of his philosophy: the unjustified commitment with an inflationary metaphysics. We show that it is possible to explain the mechanism through which these devices provide new knowledge and give an account of both their heuristic power and their evidential value from modest metaphysical commitments. (shrink)

Modern scientific cosmology pushes the boundaries of knowledge and the knowable. This is prompting questions on the nature of scientific knowledge, and the emergence of the new field “Philosophy of Cosmology.” One central issue is what defines a “good” model. I discuss how “good” models are conventionally chosen, and how those methods operate in data-sparse situations: enabling the implicit introduction of value judgments, which can determine inference and lead to inferential polarization, e.g., on the question of ultimate explanation. Additional dimensions (...) for comparing models are needed. A three-legged comparison is proposed: evidence, elegance and beneficence. This explicitly considers the categories of criteria that are always at least implicitly used. A tentative path to an implementation of the proposed model comparison framework is presented. This extends the Bayesian statistical framework. Model comparison methodology is fertile ground for dialogue between the sciences and the humanities. The proposed framework might facilitate such a dialogue. (shrink)

Traditional frameworks for evaluating scientific models have tended to downplay their exploratory function; instead they emphasize how models are inherently intended for specific phenomena and are to be judged by their ability to predict, reproduce, or explain empirical observations. By contrast, this paper argues that exploration should stand alongside explanation, prediction, and representation as a core function of scientific models. Thus, models often serve as starting points for future inquiry, as proofs of principle, as sources of potential explanations, and as (...) a tool for reassessing the suitability of the target system. This is illustrated by a case study of the varied career of reaction-diffusion models in the study of biological pattern formation, which was initiated by Alan Turing in a classic 1952 paper. Initially regarded as mathematically elegant, but biologically irrelevant, demonstrations of how, in principle, spontaneous pattern formation could occur in an organism, such Turing models have only recently rebounded, thanks to advances in experimental techniques and computational methods. The long-delayed vindication of Turing’s initial model, it is argued, is best explained by recognizing it as an exploratory tool. (shrink)

Ethics is of vital importance to the Swedish educational system, as in many other educational systems around the world.Yet, it is unclear how ethics should be dealt with in school, and prior research and evaluations have found serious problems regarding ethics in education.The field of moral education lacks clear and widely accepted definitions of key concepts, and these ambiguities negatively impact both research and educational practice. This thesis draws a distinction between three approaches to ethics in school – the descriptive (...) ethics approach, the value transmission approach, and the inquiry ethics approach – and studies in what way (if at all) they are prescribed by the national curriculum for the Swedish compulsory school, how they relate to students’ moral reasoning about technology choices and online behaviour, and what pedagogical merits and disadvantages they have. Hopefully, this both contributes to reducing the ambiguities of the field, and to answering the question of how ethics should be dealt with in education. The descriptive ethics approach asserts that school should teach students empirical facts about ethics, such as what views and opinions people have. The value transmission approach holds that school should mediate some set of predefined values to the students and make sure the students come to accept these values.The inquiry ethics approach is the view that school should teach students to reason and think critically about ethics and to engage in ethical inquiry. The role of ethics in the curriculum has not been studied in light of the above distinction, in prior research,and such an investigation is undertaken here.The results suggest that ethics has a prominent, but complicated, role in the Swedish national curriculum. Although no explicit distinction is drawn or acknowledged in the curriculum, all three approaches are prescribed throughout the curriculum, albeit to different degrees. In the general section of the curriculum, the value transmission and inquiry ethics approaches are more extensively prescribed than the descriptive ethics approach. It was found that most of the syllabi contained explicit references to ethics, while some only contained implicit references to ethics, and two syllabi lacked references to ethics altogether. In the syllabi, the inquiry ethics approach is the most dominant, both in the sense of being present in the most syllabi, and in the sense of being more strongly prescribed in many of the syllabi where several approaches occur.The value transmission approach has the weakest role in the syllabi. In total, the inquiry ethics approach is the approach most strongly prescribed by the curriculum. But prior research has shown that inquiry ethics is very rarely implemented in the classroom. In this thesis, it is found that the inquiry ethics and the value transmission approaches are incompatible, given certain reasonable interpretations, which makes the finding that inquiry ethics is rarely implemented less surprising, since value transmission is practiced in schools. Some possible causes, and some consequences, of this is discussed. The students, in their moral reasoning about technology choices, reasoned in accordance with several classical normative theories – including consequentialism, deontological ethics and virtue ethics – and in doing so, they expressed reasoning that in the discussion is found to be in conflict with the values of the value foundation in the curriculum. These findings complement earlier findings, for example that students in their actions contradict the value foundation, by adding that such conflicts also exist in their reasoning. The existence of these conflicts is found to be problematic for a value transmission approach. Many of the students defended very restrictive views on disclosing personal information online, and prior research as well as the present data has shown that adults typically hold views that are very similar to these, concerning how they think that young people ought to act online. On the other hand, youths’ actual online behaviour, as reported in earlier studies, differs considerably from this. In line with this, the students also seemed to endorse a form of private morals view, according to which moral choices are simply up to one’s own taste, which would yield an escape exit from the restrictive views mentioned above, and permit any behaviour. In the discussion, it is argued that this is the result of an attempt at value transmission from the grown-up community, probably including teachers, which might seem to work, since the students claim to hold certain views, but which likely instead constitutes a false security, since these values are not actually accepted, but only paid lip service to, and the adults are therefore wrong in their belief that the students are protected by a certain set of values (that they think the students are upholding), since the students in fact do not uphold, and therefore do not act based upon, these values. This situation risks making the students more vulnerable than had no value transmission attempt been taken in the first place. Hence, the attempted value transmission runs the risk of counteracting its purpose of helping the students acquire a safe online behaviour. Throughout the moral reasoning mentioned above, extensive variations in the students’ reasoning were found, both interpersonally and intrapersonally, both in the decision method and in the rightness criterion dimensions, as well as in between the dimensions.The existence of such variations is a novel finding, and while possible applications in future research are discussed, it is also noted that this existence constitutes a reason to question the successfulness of both the value transmission and the inquiry ethics endeavours of the educational system. The results and discussions described above highlight the importance of investigating the merits of the different approaches. Several arguments that arise from the material of this thesis are presented, evaluated and discussed. The ability of each approach to fulfil some alleged key aims of ethics education is scrutinised; their abilities to educate for good citizenship, to educate for quality of life of the individual, and to facilitate better educational results in other subjects are all investigated, as well as the ability of each approach to help counteract the influence from online extremist propaganda aimed at young people and to promote safe online behaviour in general. It is concluded that the inquiry ethics approach has the strongest support from the material of this thesis. Some consequences for school practice are discussed, and it is concluded that changing the role of ethics in the curriculum would be beneficial, downplaying the role of value transmission and further increasing, and making more explicit and clear, the role of inquiry ethics. It is also shown that there are strong reasons for the inclusion of a new subject in the Swedish compulsory education with special focus on ethics. (shrink)

In this comprehensive work on theories of rationality, Leslie Allan builds on the seminal insights of Imre Lakatos. Allan begins by critically reviewing Lakatos' theory of rationality (MSRP) and his meta-theory of rationality (MHRP) and suggesting improvements to his scheme. Allan's main task is developing a theory of rationality that avoids Lakatos' Achilles' heel; the presupposition that science is a rational enterprise. To achieve this, he attempts to draw out from the general demands of an objectivist epistemology the various criteria (...) of dependence and independence applying to evidence-statements. He concludes by considering two serious objections to his framework. (shrink)

Charles S. Peirce (1839-1914) made relevant contributions to deductive logic, but he was primarily interested in the logic of science, and more especially in what he called 'abduction' (as opposed to deduction and induction), which is the process whereby hypotheses are generated in order to explain the surprising facts. Indeed, Peirce considered abduction to be at the heart not only of scientific research, but of all ordinary human activities. Nevertheless, in spite of Peirce's work and writings in the field of (...) methodology of research, scarce attention has been paid to the logic of discovery over the last hundred years, despite an impressive development not only of scientific research but also of logic. -/- Having this in mind, the exposition is divided into five parts: 1) a brief presentation of Peirce, focusing on his work as a professional scientist; 2) an exposition of the classification of inferences by the young Peirce: deduction, induction and hypothesis; 3) a sketch of the notion of abduction in the mature Peirce; 4) an exposition of the logic of surprise; and finally, by way of conclusion, 5) a discussion of this peculiar ability of guessing understood as a rational instinct. -/- . (shrink)

Drawing on insights from Imre Lakatos' seminal work on theories of rationality, Leslie Allan develops seven criteria for rational theory choice that avoid presuming the rationality of the scientific enterprise. He shows how his axioms of rationality follow from the general demands of an objectivist epistemology. Allan concludes by considering two weighty objections to his framework.

Imre Lakatos holds a well-deserved primary place in current philosophy of science. In this essay, Leslie Allan critically examines Lakatos' theory of knowledge in two key areas. The first area of consideration is Lakatos' notion that knowledge is gained through a process of competition between rival scientific research programmes. Allan identifies and discusses four problems with Lakatos' characterization of a research programme. Next, Allan considers Lakatos' proposed test of adequacy for theories of rationality using his methodology of historiographical research programmes. (...) Allan discovers tensions within Lakatos' criteria and suggests ways of strengthening his test. (shrink)

Scientists generally record their laboratory activities and experimental results in notebooks, from which they construct scientific papers. The Johns Hopkins physiologist William Henry Howell kept a laboratory notebook from 1913 to 1914, in which he recorded experiments on the blood clotting factor prothrombin. In 1914 he published a paper using this notebook, to justify his theory of prothrombin activation. Howell's paper is reconstructed, in terms of its narrative and argument elements, from the laboratory activities and experimental results recorded in the (...) notebook. This reconstruction reveals an intimate connection between the two texts and the process by which Howell constructed a scientific paper. The generation of scientific knowledge by Howell is then evaluated, especially in terms of theory formation and justification. (shrink)

It is argued that once biological systems reach a certain level of complexity, mechanistic explanations provide an inadequate account of many relevant phenomena. In this article, I evaluate such claims with respect to a representative programme in systems biological research: the study of regulatory networks within single-celled organisms. I argue that these networks are amenable to mechanistic philosophy without need to appeal to some alternate form of explanation. In particular, I claim that we can understand the mathematical modelling techniques of (...) systems biologists as part of a broader practice of constructing and evaluating mechanism schemas. This argument is elaborated by considering the case of bacterial chemotactic networks, where some research has been interpreted as explaining phenomena by means of abstract design principles. (shrink)

A constantly changing social reality means economic theories, even if correct today, need to be constantly revised, updated, or abandoned. To maintain an up-to-date understanding of its subject matter, economists have to continuously assess their theories even those that appear to be empirically corroborated. Economics could gain from a method that describes and is capable of generating novel explanatory hypotheses. A pessimistic view on the existence of such a method was famously articulated by Karl Popper in The Logic of Scientific (...) Discovery. He wrote ‘there is no such a thing as a logical method of having ideas or a logical reconstruction of this process.’ Herbert Simon responded to Popper and argued the opposite, namely, that there is a model of discovery and its name is abduction. Simon acknowledges his debt to Charles Peirce – the first modern logician to explicitly formulate a theory of abduction – and explains that abduction is a model of discovery that works as a problem-solving heuristic encoded.. (shrink)

In recent years, there have been some attempts to defend the legitimacy of a non-inductive generative logic of discovery whose strategy is to analyze a variety of constraints on the actual generation of explanatory hypotheses. These proposed new theories, however, are only weakly generative (relying on sophisticated processes of elimination) rather than strongly generative (embodying processes of correction).This paper develops a strongly generative theory which holds that we can come to know something new only as a variant of what we (...) already know — and that the novelty of this variant is not thereby eliminated nor beyond our powers of characterization, a double requirement that is vital for resolving the Meno paradox. In this light, the discovery of a new hypothesis is taken as the correction of an antecedent hypothesis in response to the discrepancies between the predictions generated by that antecedent hypothesis and the desired result (e.g. the actual data to be explained). This process comprises two parallel operations: the first, which demonstrates the positive role of the facts in generating new explanations, involves a mapping between multiple hypotheses and sets of predictions generated from those hypotheses, for the purpose of taking the actual data as a determinable variant of neighboring sets of predictions. This mapping permits the facts to indicate how corrective adjustments in the working hypothesis should be made; the second operation, which demonstrates the positive role of explanations in generating new facts, involves a mapping between differently construed versions of the actual data and the conceptualizations derived from those perceptual versions, for the purpose of taking the working hypothesis as a determinable variant of these neighboring conceptualizations. This mapping permits a given hypothesis to generate predictions increasingly closer to the actual facts. (shrink)

I respond to the bad lot argument in the context of biological systematics. The response relies on the historical nature of biological systematics and on the availability of pattern explanations. The basic assumption of common descent enables systematic methodology to naturally generate candidate explanatory hypotheses. However, systematists face a related challenge in the issue of character analysis. Character analysis is the central problem for contemporary systematics, yet the general problem of which it is a case—what counts as evidence?—has not been (...) adequately discussed by proponents of inference to the best explanation. Facing this problem is the price of adopting abductive methods. I sketch an account of how systematists approach the problem of evidence. (shrink)

The received theories of epistemology identify abductive inferences with the cognitive patterns of speculation (hypothesis formation) and insist that they cannot verify or confirm hypotheses. I criticize various descriptions of abduction, offer a structural analysis of abductive inference,, characterize abduction without alluding to its putative role in inquiry, and then demonstrate that some abductions do provide evidence and that not all scientific hypotheses derive from abductive inferences. This result challenges those notions of scientific k knowledge that dismiss some central scientific (...) ideas (for example, evolution) as ‘meta-physical research programs’ or ‘just theories’ when they are instead well substantiated by abductive evidence. (shrink)

In this article, I compare two varieties of abduction as reconstructive models for analysing discovery. The first is 'Hansonian abduction', which is based on N. R. Hanson's formulations of abduction. The other is 'Harmanian abduction', the Inference to the Best Explanation (IBE) model, formulated especially by Gilbert Harman. Peter Lipton has analysed processes of discovery on the basis of his developed form of Harmanian abduction. I argue that Hansonian abduction would, however, be a more apt model for this purpose. As (...) an example, I reconstruct, in a Hansonian manner, Ignaz Semmelweis's research on childbed fever and compare it to the IBE reconstruction of Lipton. I argue that Hansonian abduction is in accordance with Lipton's aim of taking into account the distinction between actual and potential explanations on the one hand, and between likely and lovely explanations on the other. I maintain that a developed version of Hansonian abduction combined with loveliness gives an important, new conceptual means for analysing processes of discovery. (shrink)

This article analyzes three approaches to resolving the classical Meno paradox, or its variant, the learning paradox, emphasizing Charles S. Peirce’s notion of abduction. Abduction provides a way of dissecting those processes where something new, or conceptually more complex than before, is discovered or learned. In its basic form, abduction is a “weak” form of inference, i.e., it gives only tentative suggestions for further investigation. But it is not too weak if various sources of clues and restrictions on the abductive (...) search are taken into account. We present three, complementary versions of abduction: as a sort of guessing instinct or expert-like intuition, where unconscious clues are important; as a form of inference, where a strategic point of view is essential; and as a part of distributed cognition and mediated activity, where the interaction with the material, social, and cultural environment is emphasized. Our starting point is Peirce’s own notion of abduction, but we broaden the perspective, especially to the direction of distributed cognition. (shrink)

Along three measurements at the Large Hadron Collider (LHC), a high energy particle accelerator, we analyze procedures and consequences of exploratory experimentation (EE). While all of these measurements fulfill the requirements of EE: probing new parameter spaces, being void of a target theory and applying a broad range of experimental methods, we identify epistemic differences and suggest a classification of EE. We distinguish classes of EE according to their respective goals: the exploration where an established global theory cannot provide the (...) details of a local phenomenon, exploration of an astonishing discovery and exploration to find a new entity. We find that these classes also differ with respect to the existence of an identifiable target and their impact on the background theory. The characteristics distinguish EE from other kinds of experimentation, even though these different kinds have not yet been systematically studied. The formal rigor and precision of LHC physics facilitates to analyze concept formation in its early state. In particular we emphasize the importance for nil–results for conceptualization and argue that conceptualization can also be achieved from nil–results only. (shrink)

In this paper the basic aim of the so‐called ‘strong programme’ in the sociology of knowledge is examined. The ‘strong programme’ is considered (and rightly so) as an extreme version of the anti‐realist view of science. While the problem of scientific realism has normally been dealt with from the point of view of the ‘context of justification’ of theories, the paper focuses on the issues raised by law‐discovery. In this context Herbert Simon's views about the existence of a ‘logic of (...) scientific discovery’ are discussed and criticized. The main thesis of the paper is that if the structure of both discovery and prediction is properly understood, then the basic anti‐realist claims become untenable. A fortiori, the ‘strong programme’ appears to be unable to explain some basic features of the structure of science. (shrink)

In this article, I introduce the notion of horizon for scientific practice (HSP), representing limits or boundaries within which scientists ply their trade, to facilitate analysis of scientific discovery and progress. The notion includes not only constraints that delimit scientific practice, e.g. of bringing experimentation to a temporary conclusion, but also possibilities that open up scientific practice to additional scientific discovery and to further scientific progress. Importantly, it represents scientific practice as a dynamic and developmental integration of activities to investigate (...) and analyze the natural world. I use the discovery of the clotting factor, thrombin, and the experiments conducted by the Johns Hopkins physiologist, William Howell, on the enzymatic nature of thrombin to illustrate the notion of HSP. In a concluding section, I compare the notion of HSP to other notions for scientific practice proposed in the history and philosophy of science literature. (shrink)

The last century has seen many disciplines place a greater priority on understanding how people reason in a particular domain, and several illuminating theories of informal logic and argumentation have been developed. Perhaps owing to their diverse backgrounds, there are several connections and overlapping ideas between the theories, which appear to have been overlooked. We focus on Peirce’s development of abductive reasoning [39], Toulmin’s argumentation layout [52], Lakatos’s theory of reasoning in mathematics [23], Pollock’s notions of counterexample [44], and argumentation (...) schemes constructed by Walton et al. [54], and explore some connections between, as well as within, the theories. For instance, we investigate Peirce’s abduction to deal with surprising situations in mathematics, represent Pollock’s examples in terms of Toulmin’s layout, discuss connections between Toulmin’s layout and Walton’s argumentation schemes, and suggest new argumentation schemes to cover the sort of reasoning that Lakatos describes, in which arguments may be accepted as faulty, but revised, rather than being accepted or rejected. We also consider how such theories may apply to reasoning in mathematics: in particular, we aim to build on ideas such as Dove’s [13], which help to show ways in which the work of Lakatos fits into the informal reasoning community. (shrink)

Scientific anomalies are observations and facts that contradict current scientific theories and they are instrumental in scientific theory change. Philosophers of science have approached scientific theory change from different perspectives as Darden (Theory change in science: Strategies from Mendelian genetics, 1991) observes: Lakatos (In: Lakatos, Musgrave (eds) Criticism and the growth of knowledge, 1970) approaches it as a progressive “research programmes” consisting of incremental improvements (“monster barring” in Lakatos, Proofs and refutations: The logic of mathematical discovery, 1976), Kuhn (The structure (...) of scientific revolutions, 1996) observes that changes in “paradigms” are instigated by a crisis from some anomaly, and Hanson (In: Feigl, Maxwell (eds) Current issues in the philosophy of science, 1961) proposes that discovery does not begin with hypothesis but with some “problematic phenomena requiring explanation”. Even though anomalies are important in all of these approaches to scientific theory change, there have been only few investigations into the specific role anomalies play in scientific theory change. Furthermore, much of these approaches focus on the theories themselves and not on how the scientists and their experiments bring about scientific change (Gooding, Experiment and the making of meaning: Human agency in scientific observation and experiment, 1990). To address these issues, this paper approaches scientific anomaly resolution from a meaning construction point of view. Conceptual integration theory (Fauconnier and Turner, Cogn Sci 22:133–187, 1996; The way we think: Conceptual blending and mind’s hidden complexities, 2002) from cognitive linguistics describes how one constructs meaning from various stimuli, such as text and diagrams, through conceptual integration or blending. The conceptual integration networks that describe the conceptual integration process characterize cognition that occurs unconsciously during meaning construction. These same networks are used to describe some of the cognition while resolving an anomaly in molecular genetics called RNA interference (RNAi) in a case study. The RNAi case study is a cognitive-historical reconstruction (Nersessian, In: Giere (ed) Cognitive models of science, 1992) that reconstructs how the RNAi anomaly was resolved. This reconstruction traces four relevant molecular genetics publications in describing the cognition necessary in accounting for how RNAi was resolved through strategies (Darden 1991), abductive reasoning (Peirce, In: Hartshorne, Weiss (eds) Collected papers, 1958), and experimental reasoning (Gooding 1990). The results of the case study show that experiments play a crucial role in formulating an explanation of the RNAi anomaly and the integration networks describe the experiments’ role. Furthermore, these results suggest that RNAi anomaly resolution is embodied. It is embodied in a sense that cognition described in the cognitive-historical reconstruction is experientially based. (shrink)

It is undeniable that much scientific work is model-based. Despite this, the justification for this reliance on models is still controversial. A particular difficulty here is the fact that many scientific models are based on assumptions that do not describe the exact details of many or even any empirical situations very well. This raises the question of why it is that, despite their frequent lack of descriptive accuracy, employing models is scientifically useful.One..

There are various ``classical'' arguments against abduction as a logic of discovery,especially that (1) abduction is too weak a mode of inference to be of any use, and (2) in basic formulation of abduction the hypothesisis already presupposed to be known, so it is not the way hypotheses are discovered in the first place. In this paper I argue, by bringing forth the idea of strategies,that these counter-arguments are weaker than may appear. The concept of strategies suggests, inter alia, that (...) many inferential moves are taken into account at the same time. This is especially important in abductive reasoning, which is basically a very weak mode of inference. The importance of strategic thinking can already be seen in Charles S.Peirce's early treatments of the topic, and N.R.Hanson's later writings on abduction although they did not use the concept of``strategies.'' On the whole, I am arguing that the focus should be more on methodological processes, and not only on validity considerations, which have dominated the discussion about abduction. (shrink)

Empirical political theory has grown in importance. In empirical political theory, attention to data is part of the evaluative step. A concern was raised that being attentive to the content of political science data implies that such attentiveness would limit the normative contours of empirical political theory, and will create a status-quo bias. This concern has been called the ‘problem of critical distance’. One way to appraise the significance of this problem is to examine the work done by empirical political (...) theorists such as Anderson (on racial integration), Wenar (on international trade), and Carens (on immigration). All three scholars suggest radical policies that differ from existing institutions and rules. The likelihood that a theory will suffer from the problem of critical distance will depend on the type of usage of data by a given theorist, her/his normative standpoint, and the manner in which they coalesce or differ. (shrink)

Thomas Nickles challenges my thesis that innovative discoveries can be based on deliberately chosen problems and research strategies. He suggests that all significant innovation can be seen as such only in retrospect and that its generation must be serendipitous. Here I argue in response that significant innovations can and do often arise from self conscious critical appraisal of orthodox practice combined with regulated though speculative abductive argumentation to alternative explanatory schemata. Orthodox practice is not based upon monolithic systems of belief (...) about the subject of inquiry. Rather major domains of scientific practice often are approached from different conceptualizations that provide grounds for critical dialectic and consilient empirical information. Abductive arguments that meet appropriate conditions of likelihood, probability and analogy are an important means of justifying allocating resources to innovative practices that have yet to produce products that can rival those of established orthodoxy. (shrink)

This paper examines the research leading from the initial discovery of a disease in 1957 to its complete description twenty years later. The analysis reveals four stages in the discovery process and attempts to pinpoint the key characteristics of each of those stages. It is suggested that the early stages in the process have some of the characteristics depicted by T. H. Kuhn about the logic of discovery whereas the later stages exemplify the characteristics of the logic of discovery propounded (...) by Karl Popper. (shrink)

Amalgamating evidence from heterogeneous sources and across levels of inquiry is becoming increasingly important in many pure and applied sciences. This special issue provides a forum for researchers from diverse scientific and philosophical perspectives to discuss evidence amalgamation, its methodologies, its history, its pitfalls, and its potential. We situate the contributions therein within six themes from the broad literature on this subject: the variety-of-evidence thesis, the philosophy of meta-analysis, the role of robustness/sensitivity analysis for evidence amalgamation, its bearing on questions (...) of extrapolation and external validity of experiments, its connection with theory development, and its interface with causal inference, especially regarding causal theories of cancer. (shrink)

The aim of this paper is to clarify Udayana’s logic in his theistic monograph Nyāyakusumāñjali , especially in the second chapter where he postulates as conclusion the existence of God. In the course of this postulation, Udayana gives as its reason such Nyāya theories as the extrinsic validity of cognition (* parataḥprāmāṇya ) and the creation and dissolution of the world (*s argapralaya ). The present paper first focuses on the argument over the creation and dissolution of the world, clarifying (...) whether Udayana asserts its necessary occurrence or just its possibility. It then analyzes the precise logic of Udayana that generates the theistic hypothesis, comparing it with a logic called abduction which is put forward by Charles Peirce. (shrink)

This paper addresses the question of how scientists determine which type of hypothesis is most suitable for tackling a particular problem by examining the historical case of the anomalous β spectrum in early nuclear physics, a puzzle that occasioned the most diverse hypotheses amongst physicists at the time. It is shown that such determinations are most often implicitly informed by scientists' individual perspectives on the structural relations between the various elements of the theory and the problem at hand. In addition (...) to this main result, it is suggested that Wolfgang Pauli's neutrino idea may well have been an adaptation of Ernst Rutherford's original and older neutron idea, which would provide evidence that the adaptation of older ideas is a more common practice than is often thought. (shrink)

Currently, there is a focus in science education on preparing students for lives as innovative and resilient citizens of the twenty-first century. Key to this is providing students with opportunities, mainly through inquiry processes, for discovery making and developing their creative reasoning by bringing school science closer to authentic science. I propose, building on the work of Woods, Magnani and the authors of a 2005 special issue of Educational Philosophy and Theory on Peirce, that these efforts can be advanced through (...) the adoption of a Peircean logic of discovery in the science classroom. I further suggest that this can only take place if a classical logic that frames school science, which deems abduction—the creative element of reasoning that drives discovery—as fallacious and not valuable as an inference making process, is replaced with a naturalised logic. Such a logic positions students as practical, not ideal agents of reasoning who in their hypothesis making are inferential-experts... (shrink)