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  1. Reconceptualizing the Organism: From Complex Machine to Flowing Stream.Daniel J. Nicholson - 2018 - In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press.
    This chapter draws on insights from non-equilibrium thermodynamics to demonstrate the ontological inadequacy of the machine conception of the organism. The thermodynamic character of living systems underlies the importance of metabolism and calls for the adoption of a processual view, exemplified by the Heraclitean metaphor of the stream of life. This alternative conception is explored in its various historical formulations and the extent to which it captures the nature of living systems is examined. Following this, the chapter considers the metaphysical (...)
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  • Biological and Physicochemical Explanations in Experimental Biology.William A. Rottschaefer - 2008 - Biological Theory 3 (4):380-390.
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  • Optimality vs. intent: Limitations of Dennett's artifact hermeneutics.Krist Vaesen & Melissa van Amerongen - 2008 - Philosophical Psychology 21 (6):779 – 797.
    Dennett has argued that when people interpret artifacts and other designed objects ( such as biological items ) they rely on optimality considerations , rather than on designer's intentions. On his view , we infer an item's function by finding out what it is best at; and such functional attribution is more reliable than when we depend on the intention it was developed with. This paper examines research in cognitive psychology and archaeology , and argues that Dennett's account is implausible. (...)
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  • A Unifying Theory of Biological Function.J. H. van Hateren - 2017 - Biological Theory 12 (2):112-126.
    A new theory that naturalizes biological function is explained and compared with earlier etiological and causal role theories. Etiological theories explain functions from how they are caused over their evolutionary history. Causal role theories analyze how functional mechanisms serve the current capacities of their containing system. The new proposal unifies the key notions of both kinds of theories, but goes beyond them by explaining how functions in an organism can exist as factors with autonomous causal efficacy. The goal-directedness and normativity (...)
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  • Programming Languages as Technical Artifacts.Raymond Turner - 2014 - Philosophy and Technology 27 (3):377-397.
    Taken at face value, a programming language is defined by a formal grammar. But, clearly, there is more to it. By themselves, the naked strings of the language do not determine when a program is correct relative to some specification. For this, the constructs of the language must be given some semantic content. Moreover, to be employed to generate physical computations, a programming language must have a physical implementation. How are we to conceptualize this complex package? Ontologically, what kind of (...)
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  • Unity in the concept of function.Christian Steiner - 2009 - Conceptus: Zeitschrift Fur Philosophie (94):91-106.
    This essay argues that neither the etiological nor the dispositional account of functions conforms to the actual practice by which functions are ascribed in biology. Philip Kitcher’s account, which unifies what is common to both accounts, is assessed against what biologists are actually doing when they ascribe functions. Two problems of Kitcher’s account are identified: it is too liberal and it tends to circularity, insofar as it presupposes teleological notions. Finally, an alternative account of functions is provided by characterizing the (...)
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  • Can we define mental disorder by using the criterion of mental dysfunction?Thomas Schramme - 2010 - Theoretical Medicine and Bioethics 31 (1):35-47.
    The concept of mental disorder is often defined by reference to the notion of mental dysfunction, which is in line with how the concept of disease in somatic medicine is often defined. However, the notions of mental function and dysfunction seem to suffer from some problems that do not affect models of physiological function. Functions in general have a teleological structure; they are effects of traits that are supposed to have a particular purpose, such that, for example, the heart serves (...)
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  • Biological Organization and Cross-Generation Functions.Cristian Saborido, Matteo Mossio & Alvaro Moreno - 2011 - British Journal for the Philosophy of Science 62 (3):583-606.
    The organizational account of biological functions interprets functions as contributions of a trait to the maintenance of the organization that, in turn, maintains the trait. As has been recently argued, however, the account seems unable to provide a unified grounding for both intra- and cross-generation functions, since the latter do not contribute to the maintenance of the same organization which produces them. To face this ‘ontological problem’, a splitting account has been proposed, according to which the two kinds of functions (...)
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  • Autonomy in evolution: from minimal to complex life.Kepa Ruiz-Mirazo & Alvaro Moreno - 2012 - Synthese 185 (1):21-52.
    Our aim in the present paper is to approach the nature of life from the perspective of autonomy, showing that this perspective can be helpful for overcoming the traditional Cartesian gap between the physical and cognitive domains. We first argue that, although the phenomenon of life manifests itself as highly complex and multidimensional, requiring various levels of description, individual organisms constitute the core of this multifarious phenomenology. Thereafter, our discussion focuses on the nature of the organization of individual living entities, (...)
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  • ¿Fue Darwin el «Newton de la brizna de hierba»? La herencia de Kant en la teoría darwinista de la evolución.Laura Nuño de la Rosa & Arantza Etxeberria - 2010 - Endoxa 24:185-216.
    La crítica kantiana legó una doble herencia a la biología decimonónica: su noción de ciencia basada en el mecanicismo newtoniano configuró epistemológicamente la teoría de la evolución darwinista, mientras que su comprensión de los organismos se tradujo en una morfología teleológica. En este artículo planteamos dos cuestiones en torno la relación entre las ideas de Kant y Darwin: 1) si Kant habría considerado a Darwin el Newton de la biología, a lo que, con matices, respondemos afirmativamente; 2) si la física (...)
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  • The Return of the Organism as a Fundamental Explanatory Concept in Biology.Daniel J. Nicholson - 2014 - Philosophy Compass 9 (5):347-359.
    Although it may seem like a truism to assert that biology is the science that studies organisms, during the second half of the twentieth century the organism category disappeared from biological theory. Over the past decade, however, biology has begun to witness the return of the organism as a fundamental explanatory concept. There are three major causes: (a) the realization that the Modern Synthesis does not provide a fully satisfactory understanding of evolution; (b) the growing awareness of the limits of (...)
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  • Rethinking Woodger’s Legacy in the Philosophy of Biology.Daniel J. Nicholson & Richard Gawne - 2014 - Journal of the History of Biology 47 (2):243-292.
    The writings of Joseph Henry Woodger (1894–1981) are often taken to exemplify everything that was wrongheaded, misguided, and just plain wrong with early twentieth-century philosophy of biology. Over the years, commentators have said of Woodger: (a) that he was a fervent logical empiricist who tried to impose the explanatory gold standards of physics onto biology, (b) that his philosophical work was completely disconnected from biological science, (c) that he possessed no scientific or philosophical credentials, and (d) that his work was (...)
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  • An organizational account of biological functions.Matteo Mossio, Cristian Saborido & Alvaro Moreno - 2009 - British Journal for the Philosophy of Science 60 (4):813-841.
    In this paper, we develop an organizational account that defines biological functions as causal relations subject to closure in living systems, interpreted as the most typical example of organizationally closed and differentiated self-maintaining systems. We argue that this account adequately grounds the teleological and normative dimensions of functions in the current organization of a system, insofar as it provides an explanation for the existence of the function bearer and, at the same time, identifies in a non-arbitrary way the norms that (...)
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  • Proper activity, preference, and the meaning of life.Lucas J. Mix - 2014 - Philosophy, Theory, and Practice in Biology 6 (20150505).
    The primary challenge for generating a useful scientific definition of life comes from competing concepts of biological activity and our failure to make them explicit in our models. I set forth a three-part scheme for characterizing definitions of life, identifying a binary , a range , and a preference . The three components together form a proper activity in biology . To be clear, I am not proposing that proper activity be adopted as the best definition of life or even (...)
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  • Philosophy of nature and organism’s autonomy: on Hegel, Plessner and Jonas’ theories of living beings.Francesca Michelini, Matthias Wunsch & Dirk Stederoth - 2018 - History and Philosophy of the Life Sciences 40 (3):56.
    Following the revival in the last decades of the concept of “organism”, scholarly literature in philosophy of science has shown growing historical interest in the theory of Immanuel Kant, one of the “fathers” of the concept of self-organisation. Yet some recent theoretical developments suggest that self-organisation alone cannot fully account for the all-important dimension of autonomy of the living. Autonomy appears to also have a genuine “interactive” dimension, which concerns the organism’s functional interactions with the environment and does not simply (...)
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  • Structural representation and the two problems of content.Jonny Lee - 2019 - Mind and Language 34 (5):606-626.
    A promising strategy for defending the role that representation plays in explanations of cognition frames the concept in terms of internal models or map‐like mechanisms. “Structural representation” offers an account of representation that is grounded in well‐specified, empirical criteria. However, anti‐representationalists continue to press the issue of how to account for the paradigmatic semantic properties of representation at the subpersonal level. In this paper, I offer an account of how the proponent of structural representation should think about content. There are (...)
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  • Normativity From an Organizational Perspective.Daniel Mark Kraemer - 2014 - Biological Theory 9 (3):253-257.
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  • Functions and Shapes in the Light of the International System of Units.Ingvar Johansson - 2008 - Metaphysica 9 (1):93-117.
    Famously, Galilei made the ontological claim that the book of nature is written in the language of mathematics. Probably, if only implicitly, most contemporary natural scientists share his view. This paper, in contradistinction, argues that nature is only partly written in the language of mathematics; partly, it is written in the language of functions and partly in a very simple purely qualitative language, too. During the argumentation, three more specific but in themselves interesting theses are put forward: first (in Section (...)
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  • An artifact is to use: an introduction to instrumental functions.Jesse Hughes - 2009 - Synthese 168 (1):179-199.
    Because much of the recent philosophical interest in functions has been motivated by their application in biology and other sciences, most of the ensuing discussions have focused on functional explanations to the neglect of the practical role of functional knowledge. This practical role is essential for understanding how users form plans involving artifacts. We introduce the concept of instrumental function which is intended to capture the features of functional claims that are relevant to practical—in particular, instrumental—reasoning. We discuss the four (...)
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  • Biological Interests, Normative Functions, and Synthetic Biology.Sune Holm - 2012 - Philosophy and Technology 25 (4):525-541.
    In this paper, I discuss the aetiological account of biological interests, developed by Varner, in the context of artefactual organisms envisioned by current research in synthetic biology. In “Sections 2–5”, I present Varner's theory and criticise it for being incapable of ascribing non-derivative interests to artefactual organisms due to their lack of a history of natural selection. In “Sections 6–7”, I develop a new alternative to Varner's account, building on the organisational theory of biological teleology and function. I argue that (...)
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  • In What Sense Does ‘Nothing Make Sense Except in the Light of Evolution’?Paul Edmund Griffiths - 2009 - Acta Biotheoretica 57 (1-2):11-32.
    Dobzhansky argued that biology only makes sense if life on earth has a shared history. But his dictum is often reinterpreted to mean that biology only makes sense in the light of adaptation. Some philosophers of science have argued in this spirit that all work in ‘proximal’ biosciences such as anatomy, physiology and molecular biology must be framed, at least implicitly, by the selection histories of the organisms under study. Others have denied this and have proposed non-evolutionary ways in which (...)
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  • Selected effects and causal role functions in the brain: the case for an etiological approach to neuroscience.Justin Garson - 2011 - Biology and Philosophy 26 (4):547-565.
    Despite the voluminous literature on biological functions produced over the last 40 years, few philosophers have studied the concept of function as it is used in neuroscience. Recently, Craver (forthcoming; also see Craver 2001) defended the causal role theory against the selected effects theory as the most appropriate theory of function for neuroscience. The following argues that though neuroscientists do study causal role functions, the scope of that theory is not as universal as claimed. Despite the strong prima facie superiority (...)
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  • Against Organizational Functions.Justin Garson - 2017 - Philosophy of Science 84 (5):1093-1103.
    Over the last 20 years, several philosophers have developed a new approach to biological functions, the organizational approach. This is not a single theory but a family of theories based on the idea that a trait token can acquire a function by virtue of the way it contributes to a complex, organized system and thereby to its own continued persistence as a token. I argue that the organizational approach faces a serious liberality objection. I examine three different ways organizational theorists (...)
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  • A Generalized Selected Effects Theory of Function.Justin Garson - 2017 - Philosophy of Science 84 (3):523-543.
    I present and defend the generalized selected effects theory (GSE) of function. According to GSE, the function of a trait consists in the activity that contributed to its bearer’s differential reproduction, or differential retention, within a population. Unlike the traditional selected effects (SE) theory, it does not require that the functional trait helped its bearer reproduce; differential retention is enough. Although the core theory has been presented previously, I go significantly beyond those presentations by providing a new argument for GSE (...)
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  • An organisational approach to biological communication.Ramiro Frick, Leonardo Bich & Alvaro Moreno - 2019 - Acta Biotheoretica (2):103-128.
    This paper aims to provide a philosophical and theoretical account of biological communication grounded in the notion of organisation. The organisational approach characterises living systems as organised in such a way that they are capable to self-produce and self-maintain while in constant interaction with the environment. To apply this theoretical framework to the study of biological communication, we focus on a specific approach, based on the notion of influence, according to which communication takes place when a signal emitted by a (...)
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  • Is Evolutionary Biology Infected With Invalid Teleological Reasoning?David J. Depew - 2010 - Philosophy, Theory, and Practice in Biology 2 (20130604).
    John Reiss is a practicing evolutionary biologist (herpetology) who by his own account happened to be in the right place (Harvard’s Museum of Comparative Zoology) at the right time (the 1980s) to hear echoes of the debate about sociobiology that had been raging there between E. O. Wilson and, on the other side, Stephen Jay Gould and Richard Lewontin (xiv). Reiss is not concerned with sociobiology, at least in this book, but with the adaptationism that Gould and Lewontin saw in (...)
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  • Re-evaluating concepts of biological function in clinical medicine: towards a new naturalistic theory of disease.Benjamin Chin-Yee & Ross E. G. Upshur - 2017 - Theoretical Medicine and Bioethics 38 (4):245-264.
    Naturalistic theories of disease appeal to concepts of biological function, and use the notion of dysfunction as the basis of their definitions. Debates in the philosophy of biology demonstrate how attributing functions in organisms and establishing the function-dysfunction distinction is by no means straightforward. This problematization of functional ascription has undermined naturalistic theories and led some authors to abandon the concept of dysfunction, favoring instead definitions based in normative criteria or phenomenological approaches. Although this work has enhanced our understanding of (...)
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  • On the Theoretical Motivation for Positing Etiological Functions.Björn Brunnander - 2011 - Canadian Journal of Philosophy 41 (3):371-390.
    It is a plain fact that biology makes use of terms and expressions commonly spoken of as teleological. Biologists frequently speak of the function of biological items. They may also say that traits are 'supposed to' perform some of their effects, claim that traits are 'for' specific effects, or that organisms have particular traits 'in order to' engage in specific interactions. There is general agreement that there must be something useful about this linguistic practice but it is controversial whether it (...)
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  • Re-organizing organizational accounts of function.Marc Artiga - 2011 - Applied ontology 6 (2):105-124.
    In this paper I discuss a recent theory on functions called Organizational Account. This theory seeks to provide a new definition of function that overcomes the distinction between etiological and dispositional accounts and that could be used in biology as well as in technology. I present a definition of function that I think captures the intuitions of Organizational Accounts and consider several objections.
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  • New perspectives on artifactual and biological functions.Marc Artiga - 2016 - Applied ontology 11 (2):89-102.
    In this essay I introduce the question of artifactual functions in the context of the recent debate on the notion of function. I discuss some of the desiderata a satisfactory account should fulfill and compare them to the desiderata for a theory of biological functions. Finally, within this general framework, I briefly present the three papers included in this volume.
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  • Function, role and disposition in Basic Formal Ontology.Robert Arp & Barry Smith - 2008 - Proceedings of Bio-Ontologies Workshop, Intelligent Systems for Molecular Biology (ISMB), Toronto.
    Numerous research groups are now utilizing Basic Formal Ontology as an upper-level framework to assist in the organization and integration of biomedical information. This paper provides elucidation of the three existing BFO subcategories of realizable entity, namely function, role, and disposition. It proposes one further sub-category of tendency, and considers the merits of recognizing two sub-categories of function for domain ontologies, namely, artifactual and biological function. The motivation is to help advance the coherent ontological treatment of functions, roles, and dispositions, (...)
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  • Darwinism, Memes, and Creativity: A Critique of Darwinian Analogical Reasoning from Nature to Culture.Maria Kronfeldner - 2007 - Dissertation, University of Regensburg
    The dissertation criticizes two analogical applications of Darwinism to the spheres of mind and culture: the Darwinian approach to creativity and memetics. These theories rely on three basic analogies: the ontological analogy states that the basic ontological units of culture are so-called memes, which are replicators like genes; the origination analogy states that novelty in human creativity emerges in a "blind" Darwinian manner; and the explanatory units of selection analogy states that memes are "egoistic" and that they can spread independently (...)
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  • Ways of explaining properties.Daniel Heussen & James A. Hampton - 2008 - In B. C. Love, K. McRae & V. M. Sloutsky (eds.), Proceedings of the 30th Annual Conference of the Cognitive Science Society. Cognitive Science Society. pp. 143--148.
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