Biologically motivated computing seeks to transfer ideas from the biosciences to computer science. In seeking to make transfers it is helpful to be able to appreciate the metaphors which people use. This is because metaphors provide the context through which analogies and similes are made and by which many scientific models are constructed. As such, it is important for any rapidly evolving domain of knowledge to have developments accounted for in these terms. This paper seeks to provide one overview of (...) the process of modelling and shows how it can be used to account for a variety of biologically motivated computational models. Certain key ideas are identified in the subsequent analysis of biological sources, notably, systemic metaphors. Three important aspects of biological thinking are then considered in the light of computer science applications: biological organization, the cell, and models of evolution. The analysis throughout the paper is descriptive rather than formalized so that a large variety of potential applications may be considered. (shrink)

Mentalism preserves the triad: brain's state — thought — state of affairs whereas phy‐sicalism identifies the former two elements of it. Both stands meet the famous difficulties. But these presuppose ontological actualism. On the ground of ontological possibilism, claiming the existence of all possible worlds, one may identify a thought with the corresponding state of affairs in a possible world. Yet, possibilism turns out to be too narrow to carry such an identification and requires a significant generalization.

In order to tesl for critical thinking dispositions, the presence of the requisite critical thinking abilities must first be established. Otherwise, it is always a plausible counterexplanation of failure to use certain abilities that they were not possessed. If a person spontaneously uses some ability on a task, then it is often legitimate to conclude that the person has both the ability and the disposition to use it. However, if the person does not use the ability spontaneously, the conclusion is (...) ambiguous. The person might not have the ability, or might have the ability but not the disposition to use it, or not the disposition to use it in the specific circumstances of the presented task. This paper proposes methods of critical thinking testing designed to deal with each of these possibilities. (shrink)

This article offers a critical review of various ontological-relativist arguments, mostly deriving from the work of W. V. Quine and Thomas K hn. I maintain that these arguments are (1) internally contradictory, (2) incapable of accounting for our knowledge of the growth of scientific knowledge, and (3) shown up as fallacious from the standpoint of a causal-realist approach to issues of truth, meaning, and interpretation. Moreover, they have often been viewed as lending support to such programmes as the 'strong' sociology (...) of knowledge and the turn towards wholesale cultural-relativist doctrines, whether of the Wittgensteinian ('language-games') or Heideggerian (depth-hermeneutic) varieties. Thus Richard Rorty recommends that we should henceforth drop all that old-fashioned talk of 'truth', 'knowledge', or 'reality', since whatever warrants those descriptions from time to time is just the product of some currently favoured language-game or range of elective metaphors. Such ideas have little in common with Quine's general outlook of robust physicalism, nor again - though the case is less clear - with Kuhn's reconsidered approach to these issues as set forth in his 1969 Postscript to The Structure of Scientific Revolutions . However, both thinkers have left themselves open to misconstrual by adopting a sceptical-relativist fallback position in response to the well-known problems with logical empiricism. This essay therefore reviews those problems with reference to alternative, more adequate accounts of what is involved in the process of scientific discovery and theory-change. (shrink)

The goal of this paper is to encourage a reconfiguration of the discussion about typology in biology away from the metaphysics of essentialism and toward the epistemology of classifying natural phenomena for the purposes of empirical inquiry. First, I briefly review arguments concerning ‘typological thinking’, essentialism, species, and natural kinds, highlighting their predominantly metaphysical nature. Second, I use a distinction between the aims, strategies, and tactics of science to suggest how a shift from metaphysics to epistemology might be accomplished. Typological (...) thinking can be understood as a scientific tactic that involves representing natural phenomena using idealizations and approximations, which facilitates explanation, investigation, and theorizing via abstraction and generalization. Third, a variety of typologies from different areas of biology are introduced to emphasize the diversity of this representational reasoning. One particular example is used to examine how there can be epistemological conflict between typology and evolutionary analysis. This demonstrates that alternative strategies of typological thinking arise due to the divergent explanatory goals of researchers working in different disciplines with disparate methodologies. I conclude with several research questions that emerge from an epistemological reconfiguration of typology. (shrink)

Behaviourism is the view that preferences, beliefs, and other mental states in social-scientific theories are nothing but constructs re-describing people's behaviour. Mentalism is the view that they capture real phenomena, on a par with the unobservables in science, such as electrons and electromagnetic fields. While behaviourism has gone out of fashion in psychology, it remains influential in economics, especially in ‘revealed preference’ theory. We defend mentalism in economics, construed as a positive science, and show that it fits best scientific practice. (...) We distinguish mentalism from, and reject, the radical neuroeconomic view that behaviour should be explained in terms of brain processes, as distinct from mental states. (shrink)

The picture of synthetic biology as a kind of engineering science has largely created the public understanding of this novel field, covering both its promises and risks. In this paper, we will argue that the actual situation is more nuanced and complex. Synthetic biology is a highly interdisciplinary field of research located at the interface of physics, chemistry, biology, and computational science. All of these fields provide concepts, metaphors, mathematical tools, and models, which are typically utilized by synthetic biologists by (...) drawing analogies between the different fields of inquiry. We will study analogical reasoning in synthetic biology through the emergence of the functional meaning of noise, which marks an important shift in how engineering concepts are employed in this field. The notion of noise serves also to highlight the differences between the two branches of synthetic biology: the basic science-oriented branch and the engineering-oriented branch, which differ from each other in the way they draw analogies to various other fields of study. Moreover, we show that fixing the mapping between a source domain and the target domain seems not to be the goal of analogical reasoning in actual scientific practice. (shrink)

The article discusses the relevance of ontology, the metaphysical study of being, in social sciences through a comparison of three distinct outlooks: Roy Bhaskar's version of critical realism, a pragmatic realist approach the most renowned representatives of which are Rom Harré and Hilary Putnam, and the authors’ own synthesis of the pragmatist John Dewey's and the neopragmatist Richard Rorty's ideas, here called methodological relationalism. The Bhaskarian critical realism is committed to the heavy ontological furniture of metaphysical transcendentalism, resting on essentialist (...) presumptions of causality and social structures, tacitly creating a dualism between individuals and society. Pragmatic realists, for their part, carry much lighter metaphysical baggage than critical realists and, much in a pragmatist vein, accept the idea that social scientists should study society by studying social life—the interwoven activities of individuals. Nevertheless, pragmatic realists only reluctantly, if at all, renounce the subject–object dualism and its ontological implications. Drawing on the ideas of Donald Davidson and Richard Rorty, the writers outline their own antirepresentationalist, antiessentialist approach to social sciences. The proposed methodological relationalism is a pragmatist approach of Deweyan origin. Based on a Darwinian understanding of human beings as organisms trying to cope with their environment, it emphasises the insight that one can neither step outside one's own action, nor withdraw from the actor's point of view, just as one cannot cognitively step outside language. (shrink)

In this paper, we argue for a novel three-dimensionalist solution to the problem of persistence, i.e. cross-temporal identity. We restrict the discussion of persistence to simple substances, which do not have other substances as their parts. The account of simple substances employed in the paper is a trope-nominalist strong nuclear theory, which develops Peter Simons' trope nominalism. Regarding the distinction between three dimensionalism and four dimensionalism, we follow Michael Della Rocca's formulation, in which 3D explains persistence in virtue of same (...) entities and 4D in virtue of distinct entities. SNT is a 3D'ist position because it accounts for the persistence of simple substances in virtue of diachronically identical ‘nuclear’ tropes. The nuclear tropes of a simple substance are necessary for it and mutually rigidly dependent but distinct. SNT explains qualitative change by tropes that are contingent to a simple substance. We show that it avoids the standard problems of 3D: temporal relativization of ontic predication, Bradley's regress and coincidence, fission and fusion cases. The temporal relativization is avoided because of the analysis of temporary parts that SNT gives in terms of temporal sub-location, which is atemporal part–whole relation. (shrink)

In this article, we propose a new trope nominalist conception of determinate and determinable kinds of quantitative tropes. The conception is developed as follows. First, we formulate a new account of tropes falling under the same determinates and determinables in terms of internal relations of proportion and order. Our account is a considerable improvement on the current standard account (Campbell 1990; Maurin 2002; Simons 2003) because it does not rely on primitive internal relations of exact similarity or quantitative distance. The (...) internal relations of proportion and order hold because the related tropes exist; no kinds of tropes need be assumed here. Second, we argue that there are only pluralities of tropes in relations of proportion and order. The tropes mutually connected by the relations of proportion and order form a special type of plurality, tropes belonging to the same kind. Unlike the recent nominalist accounts, we do not identify kinds of tropes with any further entities (e.g. sets) or abstractions from entities (e.g. pluralities of similar tropes). (shrink)

This article analyses and evaluates the uses of the concept of causal power in the critical realist tradition, which is based on Roy Bhaskar's philosophy of science. The concept of causal power that appears in the early works of Rom Harré and his associates is compared to Bhaskar's account of this concept and its uses in the critical realist social ontology. It is argued that the concept of emergence should be incorporated to any adequate notion of causal power. The concept (...) of emergence used in Bhaskar and other critical realists’ works is shown to be ambiguous. It is also pointed out that the concept of causal power should be analysed in an anti-essentialist way. Ontological and methodological problems that vitiate Bhaskar's transcendental account of the concept of causal power are examined. Moreover, it is argued that the applications of the concept of causal power to mental powers, reasons, and social structures in the critical realist social ontology are problematic. The paper shows how these problems might be avoided without giving up the concept of causal power and the notion of structural social causation. (shrink)

The purpose of this article is to invigorate debate concerning the nature of analogy, and to broaden the scope of current conceptions of analogy. We argue that analogizing is not a single or even a fundamental cognitive process. The argument relies on an analysis of the history of the concept of analogy, case studies on the use of analogy in scientific problem solving, cognitive research on analogy comprehension and problem solving, and a survey of computational mechanisms of analogy comprehension. Analogizing (...) is regarded as a macrocognitive phenomenon having a number of supporting processes. These include the apperception of resemblances and distinctions, metaphor, and the balancing of semantic flexibility and inference constraint. Psychological theories and computational models have generally relied on (a) a sparse set of ontological concepts (a property called “similarity” and a structuralist categorization of types of semantic relations), (b) a single form category (i.e., the classic four-term analogy), and (c) a single set of morphological distinctions (e.g., verbal vs. pictorial analogies). This article presents a classification based on a “naturalistic” exploration of the variety of uses of analogical reasoning in pragmatically distinct contexts. The resultant taxonomy distinguishes pre-hoc, ad-hoc, post-hoc, pro-hoc, contra-hoc, and trans-hoc analogy. Each will require its own macrocognitive modeling, and each presents an opportunity for research on phenomena of reasoning that have been neglected. (shrink)

‘Naturalized’ philosophers of mind regularly appeal to the empirical psychological literature in support of the ‘theory-theory’ account of the natural epistemology of mental state ascription (to self and others). It is argued that such appeals are not philosophically neutral, but in fact presuppose the theory-theory account of mental state ascription. It is suggested that a possible explanation of the popularity of the theory-theory account is that it is generally assumed that alternative accounts in terms of introspection (and simulation) presuppose a (...) discredited ‘inner ostensive definition’ account of the meaning of mental state terms. However, the inner ostensive definition account is not the only alternative to the theory-theory account of the meaning of mental state terms, and commitment to a theory-theory account of the meaning of mental state terms does not mandate commitment to a theory-theory account of the epistemology of mental state ascription. (shrink)

I offer a defense of ana-logical accounts of scientific models by meeting certain logical objections to the legitimacy of analogical reasoning. I examine an argument by Joseph Agassi that purports to show that all putative cases of analogical inference succumb to the following dilemma: either (1) the reasoning remains hopelessly vague and thus establishes no conclusion, or (2) can be analyzed into a logically preferable non-analogical form. In rebuttal, I offer a class of scientific models for which (a) there is (...) no satisfactory non-analogical analysis, and (b) we can gain sufficient clarity for the legitimacy of the inference to be assessed. This result constitutes an existence proof for a class of analogical models that escape Agassi’s dilemma. (shrink)

In this paper an outline of a metaphysical conception of modern science is presented in which a fundamental distinction is drawn between scientific principles, laws and theories. On this view, ontologicalprinciples, rather than e.g. empirical data, constitute the core of science. The most fundamental of these principles are three in number, being, more particularly (A) the principle of the uniformity of nature, (B) the principle of the perpetuity of substance, and (C) the principle of causality.These three principles set basic constraints (...) on the methodology of both empirical and theoretical science. The uniformity principle is central to the empirical aspect of science, suggesting a methodology consisting in the attempt to discover empiricallaws, while the causality principle is central to the theoretical aspect of science, suggesting the postulation of scientifictheories capable of indicating the causal basis of the laws. And the perpetuity principle functions so as to form a bridge between the theories and the laws. (shrink)

Ist der Unterschied zwischen wissenschaftlichen Gesetzen und Theorien ein qualitativer oder lediglich von quantitativer Art? Der Autor versucht zu zeigen, daß Gesetze und Theorien fundamental verschieden sind und daß die Kenntnis ihrer verschiedenen Natur notwendig für ein richtiges Wissenschaftsverständnis ist. Aus seiner Sicht sind Theorien geistige Konstruktionen mit dem Ziel, kausale Erklärungen von empirischen Gesetzen zu geben, während diese Gesetze auf der Grundlage von Messungen entdeckt werden und die Tatsachen der Wissenschaft konstituieren. Erkenntnistheoretisch sind daher Theorien und Gesetze auf verschiedenen (...) Ebenen anzusiedeln: während Gesetze Wissen liefern, liefern Theorien Verstehen. Der Kern der Theorien besteht aus Modellen, die idealisierte Abstraktionen aus Zustandsarten darstellen. Theoretische Modelle konstituieren Ontologien, die kausale Mechanismen aufzeigen. Solche Ontologien betreffen den Bedeutungsaspekt des Gegenstandsbereichs, auf den die Theorie angewendet wird, während empirische Gesetze den Ausdrucksaspekt des gleichen Gegenstandsbereichs betreffen. Theorien erklären Gesetze, indem sie zeigen, wie der Ausdrucksaspekt lediglich der natürliche Ausdruck der Auswirkungen der Kausalmechanismen in Bedeutungsaspekt sind. (shrink)

My philosophical intuitions are those of a scientific realist. In addition to being realist in its philosophical outlook, my philosophy of economics also aspires to be realistic in the sense of being descriptively adequate, or at least normatively non-utopian, about economics as a scientific discipline. The special challenge my philosophy of economics must meet is to provide a scientific realist account that is realistic of a discipline that deals with a complex subject matter and operates with highly unrealistic models. Unrealisticness (...) in economic models must not constitute an obstacle to realism about those models. What follows is a selective and somewhat abstract summary of my thinking about economics, outlined from two perspectives: first historical and autobiographical, then systematic and comparative. The first angle helps understand motives and trajectories of ideas against their backgrounds in intellectual history. My story turns out to have both unique and generalizable aspects. The second approach outlines some of the key concepts and arguments as well as their interrelations in my philosophy of economics, with occasional comparisons to other views. More space will be devoted to this second perspective than to the first. (shrink)

Reed argues that the architectures of knowledge representation in Object -Oriented Programming and in Ayn Rand's Objectivist epistemology are exactly isomorphic, and were first proposed at about the same time. These similarities did not result from mutual influence, but from the need to represent knowledge, in both systems, in accordance with the same facts of reality. Thanks to the isomorphism of knowledge representation in the two systems, logical techniques developed in the context of OOP, such as scope-tracking and inheritance, are (...) directly usable and useful in objective logic based on Objectivist epistemology. (shrink)

The main thrust of the argument of this thesis is to show the possibility of articulating a method of construction or of synthesis--as against the most common method of analysis or division--which has always been (so we shall argue) a necessary component of scientific theorization. This method will be shown to be based on a fundamental synthetic logical relation of thought, that we shall call inversion--to be understood as a species of logical opposition, and as one of the basic monadic (...) logical operators. Thus the major objective of this thesis is to This thesis can be viewed as a response to Larry Laudan's challenge, which is based on the claim that ``the case has yet to be made that the rules governing the techniques whereby theories are invented (if any such rules there be) are the sorts of things that philosophers should claim any interest in or competence at.'' The challenge itself would be to show that the logic of discovery (if at all formulatable) performs the epistemological role of the justification of scientific theories. We propose to meet this challenge head on: a) by suggesting precisely how such a logic would be formulated; b) by demonstrating its epistemological relevance (in the context of justification) and c) by showing that a) and b) can be carried out without sacrificing the fallibilist view of scientific knowledge. OBJECTIVES: We have set three successive objectives: one general, one specific, and one sub-specific, each one related to the other in that very order. (A) The general objective is to indicate the clear possibility of renovating the traditional analytico-synthetic epistemology. By realizing this objective, we attempt to widen the scope of scientific reason or rationality, which for some time now has perniciously been dominated by pure analytic reason alone. In order to achieve this end we need to show specifically that there exists the possibility of articulating a synthetic (constructive) logic/reason, which has been considered by most mainstream thinkers either as not articulatable, or simply non-existent. (B) The second (specific) task is to respond to the challenge of Larry Laudan by demonstrating the possibility of an epistemologically significant generativism. In this context we will argue that this generativism, which is our suggested alternative, and the simplified structuralist and semantic view of scientific theories, mutually reinforce each other to form a single coherent foundation for the renovated analytico-synthetic methodological framework. (C) The third (sub-specific) objective, accordingly, is to show the possibility of articulating a synthetic logic that could guide us in understanding the process of theorization. This is realized by proposing the foundations for developing a logic of inversion, which represents the pattern of synthetic reason in the process of constructing scientific definitions. (shrink)