Proponents of two axioms of biological evolutionary theory have attempted to find justification by reference to nonequilibrium thermodynamics. One states that biological systems and their evolutionary diversification are physically improbable states and transitions, resulting from a selective process; the other asserts that there is an historically constrained inherent directionality in evolutionary dynamics, independent of natural selection, which exerts a self-organizing influence. The first, the Axiom of Improbability, is shown to be nonhistorical and thus, for a theory of change through time, (...) acausal. Its perception of the improbability of living states is at least partially an artifact of closed system thinking. The second, the Axiom of Historically Determined Inherent Directionality, is supported evidentially and has an explicit historical component. Historically constrained dynamic populations are inherently nonequilibrium systems. It is argued that living, evolving systems, when considered to be historically constrained nonequilibrium systems, do not appear improbable at all. Thus, the two axioms are not compatible. Instead, the Axiom of Improbability is considered to result from an unjustified attempt to extend the contingent proximal actions of natural selection into the area of historical, causal explanations. It is thus denied axiomatic status, and the effects of natural selection are subsumed as an additional level of constraint in an evolutionary theory derived from the Axiom of Historically Determined Inherent Directionality. (shrink)

In recent years, biologists and philosophers of science have argued that evolutionary theory should incorporate more seriously the idea of ‘reciprocal causation.’ This notion refers to feedback loops whereby organisms change their experiences of the environment or alter the physical properties of their surroundings. In these loops, in particular niche constructing activities are central, since they may alter selection pressures acting on organisms, and thus affect their evolutionary trajectories. This paper discusses long-standing problems that emerge when studying such reciprocal causal (...) processes between organisms and environments. By comparing past approaches to reciprocal causation from the early twentieth century with contemporary ones in niche construction theory, we identify two central reoccurring problems: All of these approaches have not been able to provide a conceptual framework that allows maintaining meaningful boundaries between organisms and environments, instead of merging the two, and integrating experiential and physical kinds of reciprocal causation. By building on case studies of niche construction research, we provide a model that is able to solve these two problems. It allows distinguishing between mutually interacting organisms and environments in complex scenarios, as well as integrating various forms of experiential and physical niche construction. (shrink)

The theoretical biologist Waddington drew attention to the damage to scientific progress by COWDUNG – the Conventional Wisdom of the Dominant Group. Despite Popper’s attack on what he called “the bucket theory of science”, that scientific knowledge accumulates incrementally, adding one fact after another, this is now conventional wisdom among biologists. Denis Noble is challenging not only the Neo-Darwinist orthodoxy dominating biology, but revealing the distortions of science produced by this bucket theory of science. The latter is central to understanding (...) the importance of his argument and for seeing the relevance of his work for biosemiotics. (shrink)

The notion of ecological civilisation has become central to Chinese efforts to confront and deal with environmental problems. However, ecological civilisation is characterized by its proponents in different ways. Some see it as simply an adjunct to the existing system designed to deal with current ecological crises. Its more radical proponents argue for a socialist ecological civilisation that should be developed globally and transform every part of society, changing the way people perceive, live and relate to each other and to (...) nature, and the goals they aspire to. Ecological civilisation is a translation of the Russian notion of ecological culture, and tracing the history of ecology and the concept of culture in the Soviet Union, particularly in the 1920s, I will support this more radical view, arguing that ecological civilisation is not only underpinned by eco-socialism; it provides the means to clarify the meaning of socialism generally in a way that accords with deep assumptions of Marx’s critique of capitalism. That this notion has been officially embraced within China establishes a tradition of socialist thought that now has the potential to challenge and replace global capitalism. (shrink)

C.H. Waddington’s concepts of ‘chreods’ (canalized paths of development) and ‘homeorhesis’ (the tendency to return to a path), each associated with ‘morphogenetic fields’, were conceived by him as a contribution to complexity theory. Subsequent developments in complexity theory have largely ignored Waddington’s work and efforts to advance it. Waddington explained the development of the concept of chreod as the influence on his work of Alfred North Whitehead’s process philosophy, notably, the concept of concrescence as a self-causing process. Processes were recognized (...) as having their own dynamics, rather than being explicable through their components or external agents. Whitehead recognized the tendency to think only in terms of such ‘substances’ as a bias of European thought, claiming in his own philosophy ‘to approximate more to some strains of Indian, or Chinese, thought, than to western Asiatic, or European, thought.’ Significantly, the theoretical biologist who comes closest to advancing Waddington’s research program, also marginalized, is Mae-Wan Ho. Noting this bias, and embracing Whitehead’s and Waddington’s efforts to free biology from assumptions dominating Western thought to advance an ontology of creative causal processes, I will show how later developments of complexity theory, most importantly, Goodwin’s work on oscillations, temporality and morphogenesis, Vitiello’s dissipative quantum brain dynamics, Salthe’s work on hierarchy theory, biosemiotics inspired by Peirce and von Uexküll, Robert Rosen’s work on anticipatory systems, together with category theory and biomathics, can augment while being augmented by Waddington’s work, while further advancing Mae-Wan Ho’s radical research program with its quest to understand the reality of consciousness. (shrink)

The central focus of this paper is the disjunction between the findings of climate science in revealing the threat of global warming and the failure to act appropriately to these warnings. The development of climate science can be illuminated through the perspective provided by Peircian semiotics, but efforts to account for its success as a science and its failure to convince people to act accordingly indicate the need to supplement Peirce’s ideas. The more significant gaps, it is argued, call for (...) the integration of major new ideas. It will be argued that Peirce should be viewed as a Schellingian philosopher, and it will then be shown how this facilitates integration into his philosophy of concepts developed by other philosophers and theorists within this tradition. In particular, Bourdieu’s concepts of the ‘habitus’ and ‘field’ will be integrated with Peirce’s semiotics and used to analyse the achievements and failures of climate science. It will be suggested that the resulting synthesis can augment Peirce’s evolutionary cosmology and so provide a better basis for comprehending and responding to the situation within which we find ourselves. (shrink)

Defending Robert Rosen’s claim that in every confrontation between physics and biology it is physics that has always had to give ground, it is shown that many of the most important advances in mathematics and physics over the last two centuries have followed from Schelling’s demand for a new physics that could make the emergence of life intelligible. Consequently, while reductionism prevails in biology, many biophysicists are resolutely anti-reductionist. This history is used to identify and defend a fragmented but progressive (...) tradition of anti-reductionist biomathematics. It is shown that the mathematicoephysico echemical morphology research program, the biosemiotics movement, and the relational biology of Rosen, although they have developed independently of each other, are built on and advance this antireductionist tradition of thought. It is suggested that understanding this history and its relationship to the broader history of post-Newtonian science could provide guidance for and justify both the integration of these strands and radically new work in post-reductionist biomathematics. (shrink)

Recent philosophical analyses of the epistemic dimension of images in the sciences show a certain trend in acknowledging potential roles of these images beyond their merely decorative or pedagogical functions. We argue, however, that this new debate has yet paid little attention to a special type of pictures, we call ‘visual metaphor’, and its versatile heuristic potential in organizing data, supporting communication, and guiding research, modeling, and theory formation. Based on a case study of Conrad Hal Waddington’s epigenetic landscape images (...) in biology, we develop a descriptive framework applicable to heuristic roles of various visual metaphors in the sciences. (shrink)

Recent philosophical analyses of the epistemic dimension of images in the sciences show a certain trend in acknowledging potential roles of these images beyond their merely decorative or pedagogical functions. We argue, however, that this new debate has yet paid little attention to a special type of pictures, we call ‘visual metaphor’, and its versatile heuristic potential in organizing data, supporting communication, and guiding research, modeling, and theory formation. Based on a case study of Conrad Hal Waddington’s epigenetic landscape images (...) in biology, we develop a descriptive framework applicable to heuristic roles of various visual metaphors in the sciences. (shrink)

The notion of feedback has been exploited with considerable success in scientific and technological fields as well as in the sciences of man and society. Its use in philosophical, cultural and educational contexts, however, is still rather meagre, even if some notable attempts can be found in the literature. This paper shows that the feedback concept can help learn and understand some classical philosophical theories. In particular, attention focuses on Fichte’s doctrine of science, usually presented in obscure terms following its (...) inventor’s style, and on the vulgate version of Hegel’s dialectic. Also a classic problem of linguistics concerning the meaning of sentences in partially unknown languages is interpreted with the aid of feedback diagrams. Even if the analysis is only qualitative, it is believed that it may serve as a useful tool for thought for both students and researchers. (shrink)

Historians and biologists identify the debate between mechanists and vitalists over the nature of life itself with the arguments of Driesch, Loeb, and other prominent voices. But what if the conversation was broader and the consequences deeper for the field? Following the suspicions of Joseph Needham in the 1930s and Francis Crick in the 1960s, we deployed tools of the digital humanities to an old problem in the history of biology. We analyzed over 31,000 peer-reviewed scientific papers and learned that (...) bioexceptionalism participated in a robust discursive landscape throughout subfields of the life sciences, occupied even by otherwise unknown biologists. (shrink)

The dynamics of ancient civilisations according to credited historians can be explained by means of a simple linear time-invariant feedback model whose loop only consists of a first-order process and a pure time delay. It is shown that, despite its simplicity, this model can give rise to a variety of responses, either oscillatory or aperiodic, such as those envisaged by A. Toynbee. Since modern civilisations are characterised by fast parameter variations, their description calls instead for a time-variant model. Simulations with (...) the linear parameter-varying model obtained from the aforementioned LTI model by letting its parameter vary are carried out to show the influence of different scenarios on the system response. Even if this model is elementary, it is believed that it may serve as a stimulating “tool for thought” in the ever-popular debate on the growth and decline of civilisations. (shrink)

In the course of researching the question ‘What does it mean for knowledge to grow?’, the author has developed a large and unique compendium of components, some of which are knowledge systems that serve as research and creativity support systems. The self-modifying, self-effecting creative process and the results of developing and working with these systems, using novel methods and drawing on eclectic sources, is discussed.

The theories of complexity comprise a system of great breadth. But what is included under this umbrella? Here we attempt a portrait of complexity theory, seen through the lens of complexity theory itself. That is, we portray the subject as an evolving complex dynamical system, or social network, with bifurcations, emergent properties, and so on. This is a capsule history covering the twentieth century. Extensive background data may be seen at www.visual-chaos.org/complexity.

The traditional practice of establishing morphological types and investigating morphological organization has found new support from evolutionary developmental biology (evo-devo), especially with respect to the notion of body plans. Despite recurring claims that typology is at odds with evolutionary thinking, evo-devo offers mechanistic explanations of the evolutionary origin, transformation, and evolvability of morphological organization. In parallel, philosophers have developed non-essentialist conceptions of natural kinds that permit kinds to exhibit variation and undergo change. This not only facilitates a construal of species (...) and higher taxa as natural kinds, but also broadens our perspective on the diversity of kinds found in biology. There are many different natural kinds relevant to the investigative and explanatory aims of evo-devo, including homologues and developmental modules. (shrink)

p class="MsoNormal"span style="font-size: 12pt"This paper attempts, inevitably briefly, aspannbsp; /spanre-categorization and partial resolution of some foundational issues in biology.spannbsp; /spanAn initialspannbsp; /spanground-clearing exercise extends the notion of causality in biology from merely the efficient cause to include also final and formal causality./span/p p class="MsoNormal"span style="font-size: 12pt"The HGPspannbsp; /spancan be looked on as an attempt to ground explanation of the phenotype in terms of an efficient cause rooted in a gene.spannbsp; /spanThis notion gives rise to the first section discussing the computational (...) metaphor and epigenesis and suggesting ways to extend this metaphor. The extended notion of causality alluded to above is necessary, but not sufficient, to demarcate a specific explanatory realm for the biological.spannbsp; /spanWhile the universe can ultimately, perhaps,be explainedspannbsp; /spanby quantum fluctuations being computed through the laws of nature, the origin of life remains a mystery.spannbsp;nbsp; /spanThe ground-clearing exercise refers to coincidences that motivate the cosmological anthropic /span/p p class="MsoNormal"span style="font-size: 12pt"principle, before raising an alert about the possibility of similar thermodynamic laws facilitating the emergence of life./span/p p class="MsoNormal"span style="font-size: 12pt"nbsp;/span/p p class="MsoNormal"span style="font-size: 12pt"Life itself seems to involve symbolic operations that can be described by the grammatical rules within tightly -defined limits of complexity.spannbsp;nbsp; /spanThe nascent field of biosemiotics has extended this argument, often in a Peircean direction.spannbsp; /spanYet, even here, the task involved needs to be specified. Is the organism creating proteins to launch an immune counter-attack?spannbsp;nbsp; /spanAlternatively, is a pluripotent stem cell generating an entire organism?spannbsp; /spanWe consider what these separate tasks might look like computationally./span/p p class="MsoNormal"span style="font-size: 12pt"nbsp;/span/p p class="MsoNormal"span style="font-size: 12pt"The paper ends with further delimitation of the specifically biological.spannbsp; /spanAt what point in the infinitesimal does life refuse to reveal its secrets?spannbsp; /spanConversely, at what specific levels in increasing size and complexity do boundary conditions emerge with hierarchy becoming immanent? /span/p p class="MsoNormal"span style="font-size: 12pt"nbsp;/span/p. (shrink)

A crucial question for a process view of life is how to identify a process and how to follow it through time. The genidentity view can contribute decisively to this project. It says that the identity through time of an entity X is given by a well-identified series of continuous states of affairs. Genidentity helps address the problem of diachronic identity in the living world. This chapter describes the centrality of the concept of genidentity for David Hull and proposes an (...) extension of Hull’s view to the ubiquitous phenomenon of symbiosis. Finally, using immunology as a key example, it shows that the genidentity view suggests that the main interest of a process approach is epistemological rather than ontological and that its principal claim is one of priority, namely that processes precede and define things, and not vice versa. (shrink)