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Homology thinking

Biology and Philosophy 27 (3):381-400 (2012)

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  1. (1 other version)Scientific Explanation and the Causal Structure of the World.Wesley C. Salmon - 1984 - Princeton University Press.
    The philosophical theory of scientific explanation proposed here involves a radically new treatment of causality that accords with the pervasively statistical character of contemporary science. Wesley C. Salmon describes three fundamental conceptions of scientific explanation--the epistemic, modal, and ontic. He argues that the prevailing view is untenable and that the modal conception is scientifically out-dated. Significantly revising aspects of his earlier work, he defends a causal/mechanical theory that is a version of the ontic conception. Professor Salmon's theory furnishes a robust (...)
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  • What Emotions Really Are: The Problem of Psychological Categories.Paul E. Griffiths - 1997 - University of Chicago Press.
    Paul E. Griffiths argues that most research on the emotions has been as misguided as Aristotelian efforts to study "superlunary objects" - objects...
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  • Aspects of scientific explanation.Carl G. Hempel - 1965 - In Carl Gustav Hempel (ed.), Aspects of Scientific Explanation and Other Essays in the Philosophy of Science. New York: The Free Press. pp. 504.
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  • (1 other version)Wonderful Life; The Burgess Shale and the Nature of History.Stephen Jay Gould - 1992 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 23 (2):359-360.
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  • (1 other version)Principles of Systematic Zoology.Ernst Mayr - 1969 - McGraw-Hill.
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  • The Poverty of the Linnaean Hierarchy: A Philosophical Study of Biological Taxonomy.Marc Ereshefsky - 2000 - Cambridge University Press.
    The question of whether biologists should continue to use the Linnaean hierarchy has been a hotly debated issue. Invented before the introduction of evolutionary theory, Linnaeus's system of classifying organisms is based on outdated theoretical assumptions, and is thought to be unable to provide accurate biological classifications. Marc Ereshefsky argues that biologists should abandon the Linnaean system and adopt an alternative that is more in line with evolutionary theory. He traces the evolution of the Linnaean hierarchy from its introduction to (...)
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  • Typology now: homology and developmental constraints explain evolvability.Ingo Brigandt - 2007 - Biology and Philosophy 22 (5):709-725.
    By linking the concepts of homology and morphological organization to evolvability, this paper attempts to (1) bridge the gap between developmental and phylogenetic approaches to homology and to (2) show that developmental constraints and natural selection are compatible and in fact complementary. I conceive of a homologue as a unit of morphological evolvability, i.e., as a part of an organism that can exhibit heritable phenotypic variation independently of the organism’s other homologues. An account of homology therefore consists in explaining how (...)
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  • The Poverty of the Linnaean Hierarchy: A Philosophical Study of Biological Taxonomy.Marc Ereshefsky - 2001 - Journal of the History of Biology 34 (3):600-602.
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  • Replaying Life’s Tape.John Beatty - 2006 - Journal of Philosophy 103 (7):336-362.
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  • Function, homology and character individuation.Paul E. Griffiths - 2006 - Philosophy of Science 73 (1):1-25.
    I defend the view that many biological categories are defined by homology against a series of arguments designed to show that all biological categories are defined, at least in part, by selected function. I show that categories of homology are `abnormality inclusive'—something often alleged to be unique to selected function categories. I show that classifications by selected function are logically dependent on classifications by homology, but not vice-versa. Finally, I reject the view that biologists must use considerations of selected function (...)
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  • Parts and theories in compositional biology.Rasmus Grønfeldt Winther - 2006 - Biology and Philosophy 21 (4):471-499.
    I analyze the importance of parts in the style of biological theorizing that I call compositional biology. I do this by investigating various aspects, including partitioning frames and explanatory accounts, of the theoretical perspectives that fall under and are guided by compositional biology. I ground this general examination in a comparative analysis of three different disciplines with their associated compositional theoretical perspectives: comparative morphology, functional morphology, and developmental biology. I glean data for this analysis from canonical textbooks and defend the (...)
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  • Multiple realizability.John Bickle - 2008 - Stanford Encyclopedia of Philosophy.
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  • (1 other version)Typological versus population thinking.Ernst Mayr - 1994 - In Elliott Sober (ed.), Conceptual Issues in Evolutionary Biology. The Mit Press. Bradford Books. pp. 157--160.
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  • Historicity and experimental evolution.Eric Desjardins - 2011 - Biology and Philosophy 26 (3):339-364.
    Biologists in the last 50 years have increasingly emphasized the role of historical contingency in explaining the distribution and dynamics of biological systems. However, recent work in philosophy of biology has shown that historical contingency carries various interpretations and that we are still lacking a general understanding of historicity, i.e., a framework from which to interpret why and to what extent history matters in biological processes. Building from examples and analyses of the long-term experimental evolution (LTEE) project, this paper argues (...)
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  • Cladistic classification and functional explanation.P. E. Griffiths - 1994 - Philosophy of Science 61 (2):206-227.
    I adopt a cladistic view of species, and explore the possibility that there exists an equally valuable cladistic view of organismic traits. This suggestion seems to run counter to the stress on functional views of biological traits in recent work in philosophy and psychology. I show how the tension between these two views can be defused with a multilevel view of biological explanation. Despite the attractions of this compromise, I conclude that we must reject it, and adopt an essentially cladistic (...)
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  • Endless Forms Most Beautiful: The New Science of Evo Devo.Sean Carroll - 2007 - Journal of the History of Biology 40 (3):594-597.
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  • The phenomena of homology.Paul Edmund Griffiths - 2007 - Biology and Philosophy 22 (5):643-658.
    Philosophical discussions of biological classification have failed to recognise the central role of homology in the classification of biological parts and processes. One reason for this is a misunderstanding of the relationship between judgments of homology and the core explanatory theories of biology. The textbook characterisation of homology as identity by descent is commonly regarded as a definition. I suggest instead that it is one of several attempts to explain the phenomena of homology. Twenty years ago the ‘new experimentalist’ movement (...)
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  • Styles of Scientific Thinking in the European Tradition.Alistair Crombie & Jane Maienschein - 1996 - History and Philosophy of the Life Sciences 18 (3):363.
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  • Biological Universals and the Nature of Fear.Mohan Matthen - 1998 - Journal of Philosophy 95 (3):105.
    Cognitive definitions cannot accommodate fear as it occurs in species incapable of sophisticated cognition. Some think that fear must, therefore, be noncognitive. This paper explores another option, arguably more in line with evolutionary theory: that like other "biological universals" fear admits of variation across and within species. A paradigm case of such universals is species: it is argued that they can be defined by ostension in the manner of Putnam and Kripke without implying that they must have an invariable essence. (...)
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  • Psychological categories as homologies: lessons from ethology.Marc Ereshefsky - 2007 - Biology and Philosophy 22 (5):659-674.
    Biology and Philosophy, forthcoming 2007.
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  • Homology and the origin of correspondence.Ingo Brigandt - 2002 - Biology and Philosophy 17 (3):389-407.
    Homology is a natural kind term and a precise account of what homology is has to come out of theories about the role of homologues in evolution and development. Definitions of homology are discussed with respect to the question as to whether they are able to give a non-circular account of the correspondence or sameness referred to by homology. It is argued that standard accounts tie homology to operational criteria or specific research projects, but are not yet able to offer (...)
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  • Developmental genetics and traditional homology.Jessica A. Bolker & Rudolf A. Raff - 1996 - Bioessays 18 (6):489-494.
    The concept of homology arose from classical studies of comprative morphology, and took on a new signficance with the advent of evolutionary theory. It is currentlyl undergoing antoher metamorphosis: many developmental geneticists now dfine homology as shared patterns of gene expression. However, this ne usage conflaes difinition with criteri, and fails to recognize the meaninful asignments of homology must speify a biologcal level. We argue the although developmental genetic data can help identify homologus structures. they are niether necessary nor sufficient, (...)
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  • What is a Hand? What is a Mind?Mohan Matthen - 2000 - Revue Internationale de Philosophie (214):653-672.
    Argues that biological organs, including mental capacities, should be identified by homology (not function).
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  • Homology: Integrating Phylogeny and Development.Marc Ereshefsky - 2009 - Biological Theory 4 (3):225-229.
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  • The Various Contrivances by Which Orchids Are Fertilised by Insects.Charles Darwin - 1985 - Journal of the History of Biology 18 (1):158-158.
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  • Numerical Taxonomy: The Principles and Practice of Numerical Classification.Peter Henry Andrews Sneath & Robert R. Sokal - 1973 - W. H. Freeman and Co..
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  • Defining vision: What homology thinking contributes.Mohan Matthen - 2007 - Biology and Philosophy 22 (5):675-689.
    The specialization of visual function within biological function is reason for introducing “homology thinking” into explanations of the visual system. It is argued that such specialization arises when organisms evolve by differentiation from their predecessors. Thus, it is essentially historical, and visual function should be regarded as a lineage property. The colour vision of birds and mammals do not function the same way as one another, on this account, because each is an adaptation to special needs of the visual functions (...)
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  • What Emotions Really are: The Problem of Psychological Categories. [REVIEW]Robert C. Solomon - 1999 - Philosophical Review 108 (1):131.
    “What is an emotion?” William James asked that question in the title of an essay he wrote in 1884, and his answer was that an emotion is a sensation brought about by bodily disturbance. Writing as a psychologist, he was concerned to help turn his discipline into a science. But as a philosopher writing about religious faith, by contrast, James argued that emotions must be understood in terms of such large and fuzzy issues as “the meaning of life.” The philosophy (...)
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  • Path dependence and historical contingency in biology.Eörs Szathmary - 2005 - In Andreas Wimmer & Reinhart Kössler (eds.), Understanding change: models, methodologies, and metaphors. New York: Palgrave-Macmillan. pp. 140--157.
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  • How molecular is molecular developmental biology? A reply to Alex Rosenberg's reductionism redux: Computing the embryo. [REVIEW]Manfred D. Laubichler & Günter P. Wagner - 2001 - Biology and Philosophy 16 (1):53-68.
    This paper argues in defense of theanti-reductionist consensus in the philosophy ofbiology. More specifically, it takes issues with AlexRosenberg's recent challenge of this position. Weargue that the results of modern developmentalgenetics rather than eliminating the need forfunctional kinds in explanations of developmentactually reinforce their importance.
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