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  1. How to build a brain: from function to implementation.Chris Eliasmith - 2007 - Synthese 159 (3):373-388.
    To have a fully integrated understanding of neurobiological systems, we must address two fundamental questions: 1. What do brains do (what is their function)? and 2. How do brains do whatever it is that they do (how is that function implemented)? I begin by arguing that these questions are necessarily inter-related. Thus, addressing one without consideration of an answer to the other, as is often done, is a mistake. I then describe what I take to be the best available approach (...)
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  • Integrating structure and meaning: a distributed model of analogical mapping.Chris Eliasmith & Paul Thagard - 2001 - Cognitive Science 25 (2):245-286.
    In this paper we present Drama, a distributed model of analogical mapping that integrates semantic and structural constraints on constructing analogies. Specifically, Drama uses holographic reduced representations (Plate, 1994), a distributed representation scheme, to model the effects of structure and meaning on human performance of analogical mapping. Drama is compared to three symbolic models of analogy (SME, Copycat, and ACME) and one partially distributed model (LISA). We describe Drama's performance on a number of example analogies and assess the model in (...)
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  • How to build a brain: From function to implementation.Chris Eliasmith - 2006 - Synthese 153 (3):373-388.
    To have a fully integrated understanding of neurobiological systems, we must address two fundamental questions: 1. What do brains do (what is their function)? and 2. How do brains do whatever it is that they do (how is that function implemented)? I begin by arguing that these questions are necessarily inter-related. Thus, addressing one without consideration of an answer to the other, as is often done, is a mistake. I then describe what I take to be the best available approach (...)
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  • A New ‘Idea of Nature’ for Chemical Education.Joseph E. Earley - 2013 - Science & Education 22 (7):1775-1786.
    This paper recommends that chemistry educators shift to a different ‘idea of nature’, an alternative ‘worldview.’ Much of contemporary science and technology deals in one way or another with dynamic coherences that display novel and important properties. The notion of how the world works that such studies and practices generate (and require) is quite different from the earlier concepts that are now integrated into science education. Eventual success in meeting contemporary technological and social challenges requires general diffusion of an overall (...)
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  • Multiple potential mechanisms of graft action is not a new idea.Stephen B. Dunnett - 1995 - Behavioral and Brain Sciences 18 (1):56-57.
    It is well established that neural grafts can exert functional effects on the host animal by a multiplicity of different mechanisms – by diffuse release of trophic molecules, neurohormones, and deficient neurotransmitters, as well as by growth and reformation of neural circuits. Our challenge is to understand how these different mechanisms complement each other.
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  • Elegant studies of transplant-derived repair of cognitive performance.Stephen B. Dunnett & Eduardo M. Torres - 1995 - Behavioral and Brain Sciences 18 (1):57-57.
    Cholinergic-rich grafts have been shown to be effective in restoring maze-learning deficits in rats with lesions of the forebrain cholinergic projection system. However, the relevance of those studies to developing novel therapies for Alzheimer's disease is questioned.
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  • Explaining the apocalypse: the end-Permian mass extinction and the dynamics of explanation in geohistory.Max Dresow - 2021 - Synthese 199 (3-4):10441-10474.
    Explanation is a perennially hot topic in philosophy of science. Yet philosophers have exhibited a curious blind spot to the questions of how explanatory projects develop over time, as well as what processes are involved in generating their developmental trajectories. This paper examines these questions using research into the end-Permian mass extinction as a case study. It takes as its jumping-off point the observation that explanations of historical events tend to grow more complex over time, but it goes beyond this (...)
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  • The Structure of Idealization in Biological Theories: The Case of the Wright-Fisher Model. [REVIEW]Xavier Donato Rodríguez & Alfonso Arroyo Santos - 2012 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 43 (1):11-27.
    In this paper we present a new framework of idealization in biology. We characterize idealizations as a network of counterfactual and hypothetical conditionals that can exhibit different “degrees of contingency”. We use this idea to say that, in departing more or less from the actual world, idealizations can serve numerous epistemic, methodological or heuristic purposes within scientific research. We defend that, in part, this structure explains why idealizations, despite being deformations of reality, are so successful in scientific practice. For illustrative (...)
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  • What makes neurophysiology meaningful? Semantic content ascriptions in insect navigation research.Kelle Dhein - 2020 - Biology and Philosophy 35 (5):1-22.
    In the course of investigating the living world, biologists regularly attribute semantic content to the phenomena they study. In this paper, I examine the case of a contemporary research program studying the navigation behaviors of ants and develop an account of the norms governing researchers’ ascriptions of semantic content in their research practices. The account holds that researchers assign semantic content to behaviors that reliably achieve a difficult goal-directed function, and it also suggests a productive role for attributions of semantic (...)
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  • A pragmatic account of mechanistic artifact explanation.Jan De Winter - 2011 - Studies in History and Philosophy of Science Part A 42 (4):602-609.
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  • EPSA Philosophical Issues in the Sciences: Launch of the European Philosophy of Science Association.M. Suarez, M. Dorato & M. Redei (eds.) - 2009 - Dordrecht, Netherland: Springer.
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  • Explanation in Biology: An Enquiry into the Diversity of Explanatory Patterns in the Life Sciences.P.-A. Braillard and C. Malaterre (ed.) - 2015 - Springer.
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  • Special Issue: Philosophical Considerations in the Teaching of Biology. Part I, Philosophy of Biology and Biological Explanation.Kostas Kampourakis (ed.) - 2013 - Springer (Science & Education).
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  • Scientific Pluralism.Stephen H. Kellert, Helen E. Longino & C. Kenneth Waters (eds.) - 1956 - Univ of Minnesota Press.
    Scientific pluralism is an issue at the forefront of philosophy of science. This landmark work addresses the question, Can pluralism be advanced as a general, philosophical interpretation of science?
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  • Resource Rationality.Thomas F. Icard - manuscript
    Theories of rational decision making often abstract away from computational and other resource limitations faced by real agents. An alternative approach known as resource rationality puts such matters front and center, grounding choice and decision in the rational use of finite resources. Anticipated by earlier work in economics and in computer science, this approach has recently seen rapid development and application in the cognitive sciences. Here, the theory of rationality plays a dual role, both as a framework for normative assessment (...)
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  • Pluralists about Pluralism? Versions of Explanatory Pluralism in Psychiatry.Jeroen Van Bouwel - 2014 - In M. C. Galavotti, D. Dieks, W. J. Gonzalez, S. Hartmann, Th Uebel & M. Weber (eds.), New Directions in Philosophy of Science (The Philosophy of Science in a European Perspective Series). Springer. pp. 105-119.
    In this contribution, I comment on Raffaella Campaner’s defense of explanatory pluralism in psychiatry (in this volume). In her paper, Campaner focuses primarily on explanatory pluralism in contrast to explanatory reductionism. Furthermore, she distinguishes between pluralists who consider pluralism to be a temporary state on the one hand and pluralists who consider it to be a persisting state on the other hand. I suggest that it would be helpful to distinguish more than those two versions of pluralism – different understandings (...)
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  • Neo-mechanistic explanatory integration for cognitive science: the problem of reduction remains.Diego Azevedo Leite - 2019 - Sofia 8 (1):124-145.
    One of the central aims of the neo-mechanistic framework for the neural and cognitive sciences is to construct a pluralistic integration of scientific explanations, allowing for a weak explanatory autonomy of higher-level sciences, such as cognitive science. This integration involves understanding human cognition as information processing occurring in multi-level human neuro-cognitive mechanisms, explained by multi-level neuro-cognitive models. Strong explanatory neuro-cognitive reduction, however, poses a significant challenge to this pluralist ambition and the weak autonomy of cognitive science derived therefrom. Based on (...)
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  • Adaptationism.Steven Hecht Orzack - 2010 - Stanford Encyclopedia of Philosophy.
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  • Levels of Organization in Biology.Markus Eronen & Daniel Stephen Brooks - unknown - Stanford Encyclopedia of Philosophy.
    Levels of organization are structures in nature, usually defined by part-whole relationships, with things at higher levels being composed of things at the next lower level. Typical levels of organization that one finds in the literature include the atomic, molecular, cellular, tissue, organ, organismal, group, population, community, ecosystem, landscape, and biosphere levels. References to levels of organization and related hierarchical depictions of nature are prominent in the life sciences and their philosophical study, and appear not only in introductory textbooks and (...)
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  • The philosophy of neuroscience.John Bickle, Pete Mandik & Anthony Landreth - 2006 - Stanford Encyclopedia of Philosophy.
    Over the past three decades, philosophy of science has grown increasingly “local.” Concerns have switched from general features of scientific practice to concepts, issues, and puzzles specific to particular disciplines. Philosophy of neuroscience is a natural result. This emerging area was also spurred by remarkable recent growth in the neurosciences. Cognitive and computational neuroscience continues to encroach upon issues traditionally addressed within the humanities, including the nature of consciousness, action, knowledge, and normativity. Empirical discoveries about brain structure and function suggest (...)
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  • Philosophy of Cell Biology.William Bechtel & Andrew Bollhagen - 2019 - Stanford Encyclopedia of Philosophy.
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  • Empirical Evidence and the Multiple Realization of Mental Kinds.Danny Booth - 2018 - Dissertation, University of Western Ontario
    This thesis explores the use of the concept 'realization' in the philosophy of mind. The primary focus is on the role realization plays in assessing or opposing identity theory. The history of the use of the concept of realization in the philosophy of mind is reviewed, and from that a set of desiderata to be used for assessing accounts of realization is extracted. The desiderata are applied to a sample account of realization proposed by Sydney Shoemaker. (2007) Next the application (...)
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  • Understanding Interdisciplinary Corroboration: Lessons from a Review Paper in the Mind-Brain Sciences.Jaclyn Lanthier - unknown
    The current view of the relationship between areas of the mind-brain sciences is one where cross-disciplinary collaboration is required to advance claims about the mind-brain that stand on firm epistemic footing. My goal in this dissertation is to analyze what it means for information from different areas of science to fit together to produce strong epistemic claims by addressing how and to what extent claims about the mind-brain are corroborated in scientific practice. Philosophers of science have advanced various concepts of (...)
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  • Mechanisms in Dynamically Complex Systems.Meinard Kuhlmann - 2011 - In Phyllis McKay Illari, Federica Russo & Jon Williamson (eds.), Causality in the Sciences. Oxford University Press.
    In recent debates mechanisms are often discussed in the context of ‘complex systems’ which are understood as having a complicated compositional structure. I want to draw the attention to another, radically different kind of complex system, in fact one that many scientists regard as the only genuine kind of complex system. Instead of being compositionally complex these systems rather exhibit highly non-trivial dynamical patterns on the basis of structurally simple arrangements of large numbers of non-linearly interacting constituents. The characteristic dynamical (...)
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  • A Properly Embodied Self within a Naturalistic, Bottom-up and Systemic-Relational Framework.Tiziana Vistarini Massimo Marraffa - 2019 - Humana Mente 12 (36).
    In this article a neo-Jamesian approach to the self is developed within a naturalistic, bottom-up, and systemic-relational framework. In this approach, consciousness of the body as one’s own body is a necessary precondition of self-consciousness as psychological self-awareness, and hence of a socially and historically situated narrative self. Thus we take on board the criticism of those accounts of the narrative self that pay little attention to embodiment, or go to the extreme of stating that the narrative self is abstract (...)
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  • Current perspectives on the development of the philosophy of informatics.Paweł Polak - 2017 - Philosophical Problems in Science 63:77-100.
    This article is an overview of the philosophy of informatics with a special regard to some Polish philosophers. It juxtaposes the informationistic worldview with the long-prevailing mechanical conceptualization of nature before introducing the metaphysical perspective of the information revolution in sciences. The article shows also how ontic pancomputationalism – regarded as an update to structural realism – could enrich the philosophical research in some classical topics. The paper concludes with a discussion of the philosophy of Jan Salamucha, a philosopher from (...)
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  • A Defense of Algorithmic Homuncularism.Spencer Kinsey - unknown
    In this thesis, I defend the explanatory force of algorithmic information processing models in cognitive neuroscience. I describe the algorithmic approach to cognitive explanation, its relation to Shea’s theory of cognitive representation, and challenges stemming from neuronal population analysis and dimensionality reduction. I then consider competing interpretations of some neuroscientific data that have been central to the debate. I argue in favor of a sequenced computational explanation of the phenomenon, contra Burnston. Finally, I argue that insights from theoretical neuroscience allow (...)
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  • Achieving Cumulative Progress In Understanding Crime: Some Insights from the Philosophy of Science.Jacqueline Anne Sullivan - forthcoming - Psychology, Crime and Law.
    Crime is a serious social problem, but its causes are not exclusively social. There is growing consensus that explaining and preventing it requires interdisciplinary research efforts. Indeed, the landscape of contemporary criminology includes a variety of theoretical models that incorporate psychological, biological and sociological factors. These multi-disciplinary approaches, however, have yet to radically advance scientific understandings of crime and shed light on how to manage it. In this paper, using conceptual tools on offer in the philosophy of science in combination (...)
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  • Minds Online: The Interface between Web Science, Cognitive Science, and the Philosophy of Mind.Paul Smart, Robert William Clowes & Richard Heersmink - 2017 - Foundations and Trends in Web Science 6 (1-2):1-234.
    Alongside existing research into the social, political and economic impacts of the Web, there is a need to study the Web from a cognitive and epistemic perspective. This is particularly so as new and emerging technologies alter the nature of our interactive engagements with the Web, transforming the extent to which our thoughts and actions are shaped by the online environment. Situated and ecological approaches to cognition are relevant to understanding the cognitive significance of the Web because of the emphasis (...)
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  • Is Neuroscience Relevant to Our Moral Responsibility Practices?Joseph Vukov - 2014 - Journal of Cognition and Neuroethics 2 (2):61-82.
    Some psychologists and philosophers have argued that neuroscience is importantly relevant to our moral responsibility practices, especially to our practices of praise and blame. For consider: on an unprecedented scale, contemporary neuroscience presents us with a mechanistic account of human action. Furthermore, in uential studies – most notoriously, Libet et al. (1983) – seem to show that the brain decides to do things (so to speak) before we consciously make a decision. In light of these ndings, then – or so (...)
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  • From Reactive to Endogenously Active Dynamical Conceptions of the Brain.Adele Abrahamsen & William Bechtel - unknown
    We contrast reactive and endogenously active perspectives on brain activity. Both have been pursued continuously in neurophysiology laboratories since the early 20thcentury, but the endogenous perspective has received relatively little attention until recently. One of the many successes of the reactive perspective was the identification, in the second half of the 20th century, of the distinctive contributions of different brain regions involved in visual processing. The recent prominence of the endogenous perspective is due to new findings of ongoing oscillatory activity (...)
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  • Understanding the Brain as an Endogenously Active Mechanism.William Bechtel & Adele Abrahamsen - unknown
    Although a reactive framework has long been dominant in cognitive science and neuroscience, an alternative framework emphasizing dynamics and endogenous activity has recently gained prominence. We review some of the evidence for endogenous activity and consider the implications not only for understanding cognition but also for accounts of explanation offered by philosophers of science. Our recent characterization of dynamic mechanistic explanation emphasizes the coordination of accounts of mechanisms that identify parts and operations with computational models of their activity. These can, (...)
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  • Some virtues of modeling with both hands.William Bechtel - unknown
    Webb distinguishes two endeavors she calls animal modeling and animat modeling and advocates for the former. I share her preference and point to additional virtues of modeling actual biological mechanisms (animal modeling). As Webb argues, animat modeling should be regarded as modeling of specific, but madeup, biological mechanisms. I contend that modeling made-up mechanisms in situations in which we have some knowledge of the actual mechanisms involved is modeling with one hand—the good one—tied behind one’s back.1 The hand that is (...)
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  • Complex biological mechanisms: Cyclic, oscillatory, and autonomous.William Bechtel & Adele Abrahamsen - unknown
    The mechanistic perspective has dominated biological disciplines such as biochemistry, physiology, cell and molecular biology, and neuroscience, especially during the 20th century. The primary strategy is reductionist: organisms are to be decomposed into component parts and operations at multiple levels. Researchers adopting this perspective have generated an enormous body of information about the mechanisms of life at scales ranging from the whole organism down to genetic and other molecular operations.
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  • The Mechanistic Approach to Psychiatric Classification.Elisabetta Sirgiovanni - 2009 - Dialogues in Philosophy, Mental and Neuro Sciences 2 (2):45-49.
    A Kuhnian reformulation of the recent debate in psychiatric nosography suggested that the current psychiatric classification system (the DSM) is in crisis and that a sort of paradigm shift is awaited (Aragona, 2009). Among possible revolutionary alternatives, the proposed fi ve-axes etiopathogenetic taxonomy (Charney et al., 2002) emphasizes the primacy of the genotype over the phenomenological level as the relevant basis for psychiatric nosography. Such a position is along the lines of the micro-reductionist perspective of E. Kandel (1998, 1999), which (...)
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  • Understanding Biological Mechanisms: Using Illustrations from Circadian Rhythm Research.William Bechtel - unknown
    In many fields of biology, researchers explain a phenomenon by characterizing the responsible mechanism. This requires identifying the candidate mechanism, decomposing it into its parts and operations, recomposing it so as to understand how it is organized and its operations orchestrated to generate the phenomenon, and situating it in its environment. Mechanistic researchers have developed sophisticated tools for decomposing mechanisms but new approaches, including modeling, are increasingly being invoked to recompose mechanisms when they involve nonsequential organization of nonlinear operations. The (...)
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  • Open-Ended Control vs. Closed-Ended Control: Limits of Mechanistic Explanation.Jason Winning - manuscript
    Some recent discussions of mechanistic explanation have focused on control operations. But control is often associated with teleological or normative-sounding concepts like goals and set-points, prompting the question: Does an explanation that refers to parts or mechanisms “controlling” each other thereby fail to be mechanistic? In this paper I introduce and explain a distinction between what I call open-ended and closed-ended control operations. I then argue that explanations that enlist control operations to do explanatory work can count as mechanistic only (...)
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  • The Morality of Social Movements.Sahar Heydari Fard - 2020 - Dissertation, University of Cincinnati
    Understanding a normative concept like oppression requires attention to not only its harms but also the causes of those harms. In other words, a complete understanding of such a concept requires a proper causal explanation. This causal explanation can also inform and constrain our moral response to such harms. Therefore, the conceptual explanatory framework that we use to inform our moral diagnosis and our moral response become significant. The first goal of this dissertation is to propose complexity theory as the (...)
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  • Reconciling New Mechanism and Psychological Explanation: A Pragmatic Approach.Michael De Vivo - unknown
    Recently, Gualtiero Piccinini and Carl Craver have argued that functional analyses in psychology lack explanatory autonomy from explanations in neuroscience. In this thesis I argue against this claim by motivating and defending a pragmatic-epistemic conception of autonomous psychological explanation. I argue that this conception of autonomy need not require that functional analyses be distinct in kind from neural-mechanistic explanations. I use the framework of Bas van Fraassen’s Pragmatic Theory of Explanation to show that explanations in psychology and neuroscience can be (...)
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  • Diachronic Metaphysical Building Relations: Towards the Metaphysics of Extended Cognition.Michael David Kirchhoff - 2013 - Dissertation, Macquarie University
    In the thesis I offer an analysis of the metaphysical underpinnings of the extended cognition thesis via an examination of standard views of metaphysical building (or, dependence) relations. -/- In summary form, the extended cognition thesis is a view put forth in naturalistic philosophy of mind stating that the physical basis of cognitive processes and cognitive processing may, in the right circumstances, be distributed across neural, bodily, and environmental vehicles. As such, the extended cognition thesis breaks substantially with the still (...)
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  • Conceptual Challenges in the Theoretical Foundations of Systems Biology.Marta Bertolaso & Emanuele Ratti - 2018 - In Mariano Bizzarri (ed.), Systems Biology. New York: Springer, Humana Press. pp. 1-13.
    In the last decade, Systems Biology has emerged as a conceptual and explanatory alternative to reductionist-based approaches in molecular biology. However, the foundations of this new discipline need to be fleshed out more carefully. In this paper, we claim that a relational ontology is a necessary tool to ground both the conceptual and explanatory aspects of Systems Biology. A relational ontology holds that relations are prior—both conceptually and explanatory—to entities, and that in the biological realm entities are defined primarily by (...)
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  • Towards the Methodological Turn in the Philosophy of Science.Hsiang-Ke Chao, Szu-Ting Chen & Roberta L. Millstein - 2013 - In Hsiang-Ke Chao, Szu-Ting Chen & Roberta L. Millstein (eds.), Mechanism and Causality in Biology and Economics. Springer.
    This chapter provides an introduction to the study of the philosophical notions of mechanisms and causality in biology and economics. This chapter sets the stage for this volume, Mechanism and Causality in Biology and Economics, in three ways. First, it gives a broad review of the recent changes and current state of the study of mechanisms and causality in the philosophy of science. Second, consistent with a recent trend in the philosophy of science to focus on scientific practices, it in (...)
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  • Emotions as functional kinds: A meta-theoretical approach to constructing scientific theories of emotions.Juan Raúl Loaiza Arias - 2020 - Dissertation, Humboldt-Universität Zu Berlin
    In this dissertation, I address the question of how to construct scientific theories of emotions that are both conceptually sound and empirically fruitful. To do this, I offer an analysis of the main challenges scientific theories of emotions face, and I propose a meta-theoretical framework to construct scientific concepts of emotions as explications of folk emotion concepts. Part I discusses the main challenges theories of emotions in psychology and neuroscience encounter. The first states that a proper scientific theory of emotions (...)
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  • The productive tension : mechanisms vs. templates in modeling the phenomena.Tarja Knuuttila & Andrea Loettgers - 2011 - In Paul Humphreys & Cyrille Imbert (eds.), Models, Simulations, and Representations. Routledge.
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  • Addressing information systems failures through design research.Terence Love - unknown
    The ubiquitousness of failures in new information systems designs and implementations indicates that the design methodologies that the field has developed are inadequate or faulty. This paper points to the body of knowledge developed from design research as a potential source of expertise for developing design methods that are more successful. The paper describes a meta-theoretical method for classifying theories in the Information Systems field, and identifying areas that need farther development.
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  • Identity, reduction, and conserved mechanisms: Perspectives from circadian rhythm research.William Bechtel - 2012 - In Hill Christopher & Gozzano Simone (eds.), New Perspectives on Type Identity: The Mental and the Physical. Cambridge University Press. pp. 43.
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  • Explanation: Mechanism, modularity, and situated cognition.William Bechtel - 2009 - In Murat Aydede & P. Robbins (eds.), The Cambridge Handbook of Situated Cognition. Cambridge: Cambridge University Press. pp. 155--170.
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  • What knowledge must be in the head in order to acquire language.William P. Bechtel - 1996 - In B. Velichkovsky & Duane M. Rumbaugh (eds.), Communicating Meaning: The Evolution and Development of Language. Hillsdale, Nj: Lawrence Erlbaum Associates. pp. 45.
    Many studies of language, whether in philosophy, linguistics, or psychology, have focused on highly developed human languages. In their highly developed forms, such as are employed in scientific discourse, languages have a unique set of properties that have been the focus of much attention. For example, descriptive sentences in a language have the property of being "true" or "false," and words of a language have senses and referents. Sentences in a language are structured in accord with complex syntactic rules. Theorists (...)
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  • Reduction, integration, and the unity of science: Natural, behavioral, and social sciences and the humanities.William P. Bechtel & Andrew Hamilton - 2007 - In T. Kuipers (ed.), Philosophy of Science: Focal Issues (Volume 1 of the Handbook of the Philosophy of Science). Elsevier.
    1. A Historical Look at Unity 2. Field Guide to Modern Concepts of Reduction and Unity 3. Kitcher's Revisionist Account of Unification 4. Critics of Unity 5. Integration Instead of Unity 6. Reduction via Mechanisms 7. Case Studies in Reduction and Unification across the Disciplines.
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  • Causal inquiry in the social sciences: the promise of process tracing.Rosa Runhardt - 2015 - Dissertation, London School of Economics
    In this thesis I investigate causal inquiry in the social sciences, drawing on examples from various disciplines and in particular from conflict studies. In a backlash against the pervasiveness of statistical methods, in the last decade certain social scientists have focused on finding the causal mechanisms behind observed correlations. To provide evidence for such mechanisms, researchers increasingly rely on ‘process tracing’, a method which attempts to give evidence for causal relations by specifying the chain of events connecting a putative cause (...)
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