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11.'Downward Causation'in Hierarchically Organised Biological Systems

In Francisco Jose Ayala & Theodosius Dobzhansky (eds.), Studies in the philosophy of biology: reduction and related problems. Berkeley: University of California Press. pp. 179 (1974)

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  1. The Levels of Scientific Disciplines.Samuel Elgin - manuscript
    It is the aim of this paper to develop and defend an interpretation of level of scientific discipline within the truth-maker framework. In particular, I exploit the mereological relation of proper parthood, which is integral to truth-maker semantics, in order to provide an account of scientific level.
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  • Becoming a Self: The past, present and future of selfhood.David L. Thompson - forthcoming - Altona, MB, Canada: FriesenPress.
    What makes us persons? Is it our bodies, our minds, or our consciousness? For centuries, philosophers have sought to answer these questions. While some believe humans are physical or biological, others claim we have an immaterial soul. This book proposes a new alternative. Selves were formed in evolution through connections and commitments to others when early hominins lived in tribal groups and developed languages. As humans learned to fulfill these commitments, they not only cultivated relationships but also created their personal (...)
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  • The End of Modern Medicine: Biomedical Science Under a Microscope.Laurence Foss - 2001 - State University of New York Press.
    Proposes a radically reconfigured medical model centered on mind-body interaction.
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  • Looking down, around, and up: Mechanistic explanation in psychology.William Bechtel - 2009 - Philosophical Psychology 22 (5):543-564.
    Accounts of mechanistic explanation have emphasized the importance of looking down—decomposing a mechanism into its parts and operations. Using research on visual processing as an exemplar, I illustrate how productive such research has been. But once multiple components of a mechanism have been identified, researchers also need to figure out how it is organized—they must look around and determine how to recompose the mechanism. Although researchers often begin by trying to recompose the mechanism in terms of sequential operations, they frequently (...)
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  • Semiosis as an emergent process.Joao Queiroz & Charbel Nino El-Hani - 2006 - Transactions of the Charles S. Peirce Society 42 (1):78-116.
    : In this paper, we intend to discuss if and in what sense semiosis (meaning process, cf. C. S. Peirce) can be regarded as an "emergent" process in semiotic systems. It is not our problem here to answer when or how semiosis emerged in nature. As a prerequisite for the very formulation of these problems, we are rather interested in discussing the conditions which should be fulfilled for semiosis to be characterized as an emergent process. The first step in this (...)
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  • Physical Time and Human Time.George F. R. Ellis - 2023 - Foundations of Physics 54 (1):1-17.
    This paper is a comment on both Bunamano and Rovelli (Bridging the neuroscience and physics of time arXiv:2110.01976. (2022)) and Gruber et al. (in Front. Psychol. Hypothesis Theory, 2022) and which discuss the relation between physical time and human time. I claim here, contrary to many views discussed there, that there is no foundational conflict between the way physics views the passage of time and the way the mind/brain perceives it. The problem rather resides in a number of misconceptions leading (...)
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  • Living things as hierarchically organized structures.Uko Zylstra - 1992 - Synthese 91 (1-2):111 - 133.
    Hierarchical organization is an essential characteristic of living things. Although most biologists affirm the concept of living things as hierarchically organized structures, there are widespread differences of interpretation in the meaning of hierarchy and of how the concept of hierarchy applies to living things. One such basic difference involves the distinction between the concept of control hierarchy and classification hierarchy. It is suggested that control hierarchies are distinguished from classification hierarchies in that while the former involve authority relationships between levels, (...)
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  • A conceptual linkage between cognitive architectures and social interaction.Kees Zoethout & Wander Jager - 2009 - Semiotica 2009 (175):317-333.
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  • Where to Look for Emergent Properties.Agustín Vicente - 2013 - International Studies in the Philosophy of Science 27 (2):156.
    Recent years have seen renewed interest in the emergence issue. The contemporary debate, in contrast with that of past times, has to do not so much with the mind–body problem as with the relationship between the physical and other domains; mostly with the biological domain. One of the main sources of this renewed interest is the study of complex and, in general, far-from-equilibrium self-preserving systems, which seem to fulfil one of the necessary conditions for an entity to be emergent; namely, (...)
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  • Kant’s Teleology, the Concept of the Organism, and the Context of Contemporary Biology.Georg Toepfer - 2011 - History of Philosophy & Logical Analysis 14 (1):107-124.
    For Kant, the main aim of teleology in nature is to identify or to segregate as a particular class of objects certain types of causal systems, specifically, systems of interdependent parts.With the development of physiology as a distinct science at the beginning of the 18th century, the idea of interdependence or reciprocity of parts in a system was well-established as a fundamental principle for the specification of organisms. Kant combined the ideas of teleology and causal reciprocity in his systems-theoretical foundation (...)
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  • Popper, Historicism and Emergence.Nicholas Tilley - 1982 - Philosophy of the Social Sciences 12 (1):59-67.
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  • Radical embodiment: Neural dynamics and consciousness.Evan Thompson & Francisco J. Varela - 2001 - Trends in Cognitive Sciences 5 (10):418-425.
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  • A metaphysical approach to holobiont individuality: Holobionts as emergent individuals.Javier Suárez & Vanessa Triviño - 2019 - Quaderns de Filosofia 6 (1):59-76.
    Holobionts are symbiotic assemblages composed by a host plus its microbiome. The status of holobionts as individuals has recently been a subject of continuous controversy, which has given rise to two main positions: on the one hand, holobiont advocates argue that holobionts are biological individuals; on the other, holobiont detractors argue that they are just mere chimeras or ecological communities, but not individuals. Both parties in the dispute develop their arguments from the framework of the philosophy of biology, in terms (...)
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  • Why is There No Successful Whole Brain Simulation (Yet)?Klaus M. Stiefel & Daniel S. Brooks - 2019 - Biological Theory 14 (2):122-130.
    With the advent of powerful parallel computers, efforts have commenced to simulate complete mammalian brains. However, so far none of these efforts has produced outcomes close to explaining even the behavioral complexities of animals. In this article, we suggest four challenges that ground this shortcoming. First, we discuss the connection between hypothesis testing and simulations. Typically, efforts to simulate complete mammalian brains lack a clear hypothesis. Second, we treat complications related to a lack of parameter constraints for large-scale simulations. To (...)
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  • Conservation, Creation, and Evolution: Revising the Darwinian Project.Gennady Shkliarevsky - 2019 - Journal of Evolutionary Science 1 (2):1-30.
    There is hardly anything more central to our universe than conservation. Many scientific fields and disciplines view the law of conservation as one of the most fundamental universal laws. The Darwinian model pivots the process of evolution on variability, reproduction, and natural selection. Conservation plays a marginal role in this model and is not really universal, as the model allows exceptions to conservation, i.e. non-conservation, to play an equally important role in evolution. This anomalous role of conservation in the Darwinian (...)
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  • Van rooijen and Mayr versus Popper: Is the universe causally closed?Tom Settle - 1989 - British Journal for the Philosophy of Science 40 (3):389-403.
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  • Six things Popper would like biologists not to ignore: In memoriam, Karl Raimund Popper, 1902–1994.Tom Settle - 1996 - Biology and Philosophy 11 (2):141-159.
    To honour the memory of Sir Karl Popper, I put forward six elements of his philosophy which might be of particular interest to biologists and to philosophers of biology and which I think Popper would like them not to ignore, even if they disagree with him. They are: the primacy of problems; the criticizability of metaphysics (and thus the dubiousness of materialism); how downward causation might be real; how norms should matter to scientists; why dogmatism should be avoided; how genuine (...)
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  • 'Fitness' and 'altruism': Traps for the unwary, bystander and biologist alike. [REVIEW]Tom Settle - 1993 - Biology and Philosophy 8 (1):61-83.
    At one level, this paper is a lament and a warning. I lament biologists borrowing well-known terms and then drastically and awkwardly changing their meanings, and I warn about the mischief this does. Biology''s public image is at stake, as is its general usefulness. At another level, I attempt to clarify the misnamed concepts, beyond what has been achieved in recent philosophical writings. This helps to account for the mischief, and to see how it might be avoidable. But the most (...)
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  • The emergence of creativity.R. Keith Sawyer - 1999 - Philosophical Psychology 12 (4):447 – 469.
    This paper is an extended exploration of Mead's phrase the emergence of the novel. I describe and characterize emergent systems-complex dynamical systems that display behavior that cannot be predicted from a full and complete description of the component units of the system. Emergence has become an influential concept in contemporary cognitive science [A. Clark Being there, Cambridge: MIT Press], complexity theory [W. Bechtel & R.C. Richardson Discovering complexity, Princeton, NJ: Princeton University Press], artificial life [R.A. Brooks & P. Maes Artificial (...)
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  • What to say to a skeptical metaphysician: A defense manual for cognitive and behavioral scientists.Don Ross & David Spurrett - 2004 - Behavioral and Brain Sciences 27 (5):603-627.
    A wave of recent work in metaphysics seeks to undermine the anti-reductionist, functionalist consensus of the past few decades in cognitive science and philosophy of mind. That consensus apparently legitimated a focus on what systems do, without necessarily and always requiring attention to the details of how systems are constituted. The new metaphysical challenge contends that many states and processes referred to by functionalist cognitive scientists are epiphenomenal. It further contends that the problem lies in functionalism itself, and that, to (...)
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  • Zooming in on downward causation.William S. Robinson - 2005 - Biology and Philosophy 20 (1):117-136.
    . An attempt is made to identify a concept of ‘downward causation’ that will fit the claims of some recent writers and apply to interesting cases in biology and cognitive theory, but not to trivial cases. After noting some difficulties in achieving this task, it is proposed that in interesting cases commonly used to illustrate ‘downward causation’, (a) regularities hold between multiply realizable properties and (b) the explanation of the parallel regularity at the level of the realizing properties is non-trivial. (...)
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  • Towards a multi-level approach to the emergence of meaning processes in living systems.João Queiroz & Charbel Niño El-Hani - 2006 - Acta Biotheoretica 54 (3):179-206.
    Any description of the emergence and evolution of different types of meaning processes (semiosis, sensu C.S.Peirce) in living systems must be supported by a theoretical framework which makes it possible to understand the nature and dynamics of such processes. Here we propose that the emergence of semiosis of different kinds can be understood as resulting from fundamental interactions in a triadically-organized hierarchical process. To grasp these interactions, we develop a model grounded on Stanley Salthe's hierarchical structuralism. This model can be (...)
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  • The Limitations of Hierarchical Organization.Angela Potochnik & Brian McGill - 2012 - Philosophy of Science 79 (1):120-140.
    The concept of hierarchical organization is commonplace in science. Subatomic particles compose atoms, which compose molecules; cells compose tissues, which compose organs, which compose organisms; etc. Hierarchical organization is particularly prominent in ecology, a field of research explicitly arranged around levels of ecological organization. The concept of levels of organization is also central to a variety of debates in philosophy of science. Yet many difficulties plague the concept of discrete hierarchical levels. In this paper, we show how these difficulties undermine (...)
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  • Three obstructions: Forms of causation, chronotopoids, and levels of reality.Roberto Poli - 2007 - Axiomathes 17 (1):1-18.
    The thesis is defended that the theories of causation, time and space, and levels of reality are mutually interrelated in such a way that the difficulties internal to theories of causation and to theories of space and time can be understood better, and perhaps dealt with, in the categorial context furnished by the theory of the levels of reality. The structural condition for this development to be possible is that the first two theories be opportunely generalized.
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  • The basic problem of the theory of levels of reality.Roberto Poli - 2001 - Axiomathes 12 (3-4):261-283.
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  • Contextual Emergence and Its Applications in Philosophy of Mind and Cognitive Science.Robert Poczobut - 2018 - Roczniki Filozoficzne 66 (3):123-146.
    The purpose of the article is to analyze the concept of contextual emergence as well as its selected applications in philosophy of mind and cognitive science. In the first section the author presents the general assumptions of the emergentist model of reality. He stresses that the concept of emergence can be applied to the description of various levels of organization of nature: one of these levels is that of mental-cognitive processes, analyzed within the fields of philosophy of mind and cognitive (...)
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  • Causal Exclusion and Downward Counterfactuals.Tuomas K. Pernu - 2016 - Erkenntnis 81 (5):1031-1049.
    One of the main line of responses to the infamous causal exclusion problem has been based on the counterfactual account of causation. However, arguments have begun to surface to the effect that the counterfactual theory is in fact ill-equipped to solve the exclusion problem due to its commitment to downward causation. This argumentation is here critically analysed. An analysis of counterfactual dependence is presented and it is shown that if the semantics of counterfactuals is taken into account carefully enough, the (...)
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  • Concluding reflection.Arthur Peacocke - 1991 - Zygon 26 (4):527-540.
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  • The Dynamics of Group Cognition.S. Orestis Palermos - 2016 - Minds and Machines 26 (4):409-440.
    The aim of this paper is to demonstrate that the postulation of irreducible, distributed cognitive systems is necessary for the successful explanatory practice of cognitive science and sociology. Towards this end, and with an eye specifically on the phenomenon of distributed cognition, the debate over reductionism versus emergence is examined from the perspective of Dynamical Systems Theory. The motivation for this novel approach is threefold. Firstly, DST is particularly popular amongst cognitive scientists who work on modelling collective behaviors. Secondly, DST (...)
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  • Emergence, Closure and Inter-level Causation in Biological Systems.Matteo Mossio, Leonardo Bich & Alvaro Moreno - 2013 - Erkenntnis 78 (2):153-178.
    In this paper, we advocate the idea that an adequate explanation of biological systems requires appealing to organizational closure as an emergent causal regime. We first develop a theoretical justification of emergence in terms of relatedness, by arguing that configurations, because of the relatedness among their constituents, possess ontologically irreducible properties, providing them with distinctive causal powers. We then focus on those emergent causal powers exerted as constraints, and we claim that biological systems crucially differ from other natural systems in (...)
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  • Emergence: logical, functional and dynamical. [REVIEW]Sandra D. Mitchell - 2012 - Synthese 185 (2):171-186.
    Philosophical accounts of emergence have been explicated in terms of logical relationships between statements (derivation) or static properties (function and realization). Jaegwon Kim is a modern proponent. A property is emergent if it is not explainable by (or reducible to) the properties of lower level components. This approach, I will argue, is unable to make sense of the kinds of emergence that are widespread in scientific explanations of complex systems. The standard philosophical notion of emergence posits the wrong dichotomies, confuses (...)
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  • Colloquium 1: Aristotle’s Metaphysics as the Ontology of Being-Alive and its Relevance Today.Alfred Miller - 2005 - Proceedings of the Boston Area Colloquium of Ancient Philosophy 20 (1):1-107.
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  • The limits of reductionism in biology: what alternatives?Fulvio Mazzocchi - 2011 - E-Logos 18 (1):1-19.
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  • Two-step emergence: the quantum theory of atoms in molecules as a bridge between quantum mechanics and molecular chemistry.Chérif F. Matta, Olimpia Lombardi & Jesús Jaimes Arriaga - 2020 - Foundations of Chemistry 22 (1):107-129.
    By moving away from the traditional reductionist reading of the quantum theory of atoms in molecules, in this paper we analyze the role played by QTAIM in the relationship between molecular chemistry and quantum mechanics from an emergentist perspective. In particular, we show that such a relationship involves two steps: an intra-domain emergence and an inter-domain emergence. Intra-domain emergence, internal to quantum mechanics, results from the fact that the electron density, from which all the other QTAIM’s concepts are defined, arises (...)
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  • Natural Selection and Multi-Level Causation.Maximiliano Martínez & Andrés Moya - 2011 - Philosophy, Theory, and Practice in Biology 3 (20130604).
    In this paper, using a multilevel approach, we defend the positive role of natural selection in the generation of organismal form. Despite the currently widespread opinion that natural selection only plays a negative role in the evolution of form, we argue, in contrast, that the Darwinian factor is a crucial (but not exclusive) factor in morphological organization. Analyzing some classic arguments, we propose incorporating the notion of ‘downward causation’ into the concept of ‘natural selection.’ In our opinion, this kind of (...)
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  • Multilevel Causation and the Extended Synthesis.Maximiliano Martínez & Maurizio Esposito - 2014 - Biological Theory 9 (2):209-220.
    In this article we argue that the classical—linear and bottom-up directed—models of causation in biology, and the ‘‘proximate/ultimate’’ dichotomy, are inappropriate to capture the complexity inherent to biological processes. We introduce a new notion of ‘‘multilevel causation’’ where old dichotomies such as proximate/ultimate and bottom-up/ top-down are reinterpreted within a multilevel, web-like, approach. In briefly reviewing some recent work on complexity, EvoDevo, carcinogenesis, autocatalysis, comparative genomics, animal regeneration, phenotypic plasticity, and niche construction, we will argue that such reinterpretation is a (...)
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  • Distinguishing Between Inter-domain and Intra-domain Emergence.Olimpia Lombardi & María J. Ferreira Ruiz - 2019 - Foundations of Science 24 (1):133-151.
    Currently, there are almost as many conceptions of emergence as authors who address the issue. Most literature on the matter focuses either on discussing, evaluating and comparing particular contributions or accounts of emergence, or on assessing a particular case study. Our aim in this paper is rather different. We here set out to introduce a distinction that has not been sufficiently taken into account in previous discussions on this topic: the distinction between inter-domain emergence—a relation between items belonging to different (...)
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  • The emergence principle in biological hierarchies.Robert W. Korn - 2005 - Biology and Philosophy 20 (1):137-151.
    Emergent properties have been described by Mill, Lewes, Broad, Morgan and others, as novel, nonadditive, nonpredictable and nondeducible within a hierarchical context. I have developed a more definitive concept of a hierarchy that can be used to inspect the phenomenon of emergence in a new and detailed manner. A hierarchy is held together by descending constraints and new features can arise when an upper level entity restrains its components in new combinations that are not expected when viewing these components alone. (...)
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  • How causal is downward causation?Menno Hulswit - 2005 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 36 (2):261 - 287.
    The purpose of this paper is to lay bare the major problems underlying the concept of downward causation as discussed within the perspective of the present interest for phenomena that are characterized by self-organization. In our Discussion of the literature, we have focussed on two questions: (1) What sorts of things are said to be, respectively, causing and caused within the context of downward causation? And (2) What is the meaning of 'causing' in downward causation? We have concluded that the (...)
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  • Selection of organization at the social level: Obstacles and facilitators of metasystem transitions.Francis Heylighen & Donald Campbell - 1995 - World Futures 45 (1):181-212.
    (1995). Selection of organization at the social level: Obstacles and facilitators of metasystem transitions. World Futures: Vol. 45, The Quantum of Evolution, pp. 181-212.
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  • Entanglement, Symmetry Breaking and Collapse: Correspondences Between Quantum and Self-Organizing Dynamics.Francis Heylighen - 2021 - Foundations of Science 28 (1):85-107.
    Quantum phenomena are notoriously difficult to grasp. The present paper first reviews the most important quantum concepts in a non-technical manner: superposition, uncertainty, collapse of the wave function, entanglement and non-locality. It then tries to clarify these concepts by examining their analogues in complex, self-organizing systems. These include bifurcations, attractors, emergent constraints, order parameters and non-local correlations. They are illustrated with concrete examples that include Rayleigh–Bénard convection, social self-organization and Gestalt perception of ambiguous figures. In both cases, quantum and self-organizing, (...)
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  • Foundations and methodology for an evolutionary world view: A review of the principia cybernetica project. [REVIEW]Francis Heylighen - 2000 - Foundations of Science 5 (4):457-490.
    The Principia Cybernetica Project was created to develop an integrated philosophy or world view, based on the theories of evolution, self-organization, systems and cybernetics. Its conceptual network has been implemented as an extensive website. The present paper reviews the assumptions behind the project, focusing on its rationale, its philosophical presuppositions, and its concrete methodology for computer-supported collaborative development. Principia Cybernetica starts from a process ontology, where a sequence of elementary actions produces ever more complex forms of organization through the mechanism (...)
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  • Scale Dependency and Downward Causation in Biology.Sara Green - 2018 - Philosophy of Science 85 (5):998-1011.
    This paper argues that scale-dependence of physical and biological processes offers resistance to reductionism and has implications that support a specific kind of downward causation. I demonstrate how insights from multiscale modeling can provide a concrete mathematical interpretation of downward causation as boundary conditions for models used to represent processes at lower scales. The autonomy and role of macroscale parameters and higher-level constraints are illustrated through examples of multiscale modeling in physics, developmental biology, and systems biology. Drawing on these examples, (...)
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  • What are the Units of Language Evolution?Nathalie Gontier - 2018 - Topoi 37 (2):235-253.
    Universal Darwinism provides a methodology to study the evolution of anatomical form and sociocultural behavior that centers on defining the units and levels of selection, and it identifies the conditions whereby natural selection operates. In previous work, I have examined how this selection-focused evolutionary epistemology may be universalized to include theories that associate with an extended synthesis. Applied evolutionary epistemology is a metatheoretical framework that understands any and all kinds of evolution as phenomena where units evolve by mechanisms at levels (...)
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  • The Plurality of Evolutionary Worldviews.Nathalie Gontier - 2021 - Biosemiotics 14 (1):35-40.
    Evolutionary biologists, evolutionary epistemologists, and biosemioticians have demonstrated that organisms not merely adapt to an external world, but that they actively construct their environmental, sociocultural, and cognitive niches. Denis Noble demonstrates that such is no different for those organisms that engage in science, and he lays bare several crucial assumptions that define the scientific dogmas and practices of evolutionary biology.
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  • Hierarchies, Networks, and Causality: The Applied Evolutionary Epistemological Approach.Nathalie Gontier - 2021 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 52 (2):313-334.
    Applied Evolutionary Epistemology is a scientific-philosophical theory that defines evolution as the set of phenomena whereby units evolve at levels of ontological hierarchies by mechanisms and processes. This theory also provides a methodology to study evolution, namely, studying evolution involves identifying the units that evolve, the levels at which they evolve, and the mechanisms and processes whereby they evolve. Identifying units and levels of evolution in turn requires the development of ontological hierarchy theories, and examining mechanisms and processes necessitates theorizing (...)
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  • Evolutionary Epistemology: Two Research Avenues, Three Schools, and A Single and Shared Agenda.Nathalie Gontier & Michael Bradie - 2021 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 52 (2):197-209.
    This special issue for the Journal for General Philosophy of Science is devoted to exploring the impact and many ramifications of current research in evolutionary epistemology. Evolutionary epistemology is an inter- and multidisciplinary area of research that can be divided into two ever-inclusive research avenues. One research avenue expands on the EEM program and investigates the epistemology of evolution. The other research avenue builds on the EET program and researches the evolution of epistemology. Since its conception, EE has developed three (...)
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  • Cognitive theism: Sources of accommodation between secularism and religion.Robert B. Glassman - 1996 - Zygon 31 (2):157-207.
    Religion persists, even within enlightened secular society, because it has adaptive functions. In particular, Ralph Wendell Burhoe's theory holds that religion is the repository of cultural wisdom that most encourages mutual altruism among nonkin, long-term social survival, and human progress. This article suggests a variant of Burhoe's rationalized naturalistic view. Cognitive theism is a proposal that secularists sometimes take religion on its own terms by suspending disbelief about God. If we consider particular human capacities and limitations in memory, perception, personality, (...)
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  • A framework for the unification of the behavioral sciences.Herbert Gintis - 2007 - Behavioral and Brain Sciences 30 (1):1-16.
    The various behavioral disciplines model human behavior in distinct and incompatible ways. Yet, recent theoretical and empirical developments have created the conditions for rendering coherent the areas of overlap of the various behavioral disciplines. The analytical tools deployed in this task incorporate core principles from several behavioral disciplines. The proposed framework recognizes evolutionary theory, covering both genetic and cultural evolution, as the integrating principle of behavioral science. Moreover, if decision theory and game theory are broadened to encompass other-regarding preferences, they (...)
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  • Incommensurability and the Extended Evolutionary Synthesis: taking Kuhn seriously.Juan Gefaell & Cristian Saborido - 2022 - European Journal for Philosophy of Science 12 (2):1-25.
    In this paper, we analyze the debate between the Modern Synthesis and the Extended Evolutionary Synthesis in light of the concept of incommensurability developed by Thomas Kuhn. In order to do so, first we briefly present both the Modern Synthesis and the Extended Evolutionary Synthesis. Then, we clarify the meaning and interpretations of incommensurability throughout Kuhn’s works, concluding that the version of this concept deployed in The Structure of Scientific Revolutions is the best suited to the analysis of scientific disputes. (...)
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