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  1. A conceptual taxonomy of adaptation in evolutionary biology.Emanuele Serrelli & Francesca Micol Rossi - manuscript
    The concept of adaptation is employed in many fields such as biology, psychology, cognitive sciences, robotics, social sciences, even literacy and art,1 and its meaning varies quite evidently according to the particular research context in which it is applied. We expect to find a particularly rich catalogue of meanings within evolutionary biology, where adaptation has held a particularly central role since Darwin’s The Origin of Species (1859) throughout important epistemological shifts and scientific findings that enriched and diversified the concept. Accordingly, (...)
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  • Multiple explanations in Darwinian evolutionary theory.Walter J. Bock - 2009 - Acta Biotheoretica 58 (1):65-79.
    Variational evolutionary theory as advocated by Darwin is not a single theory, but a bundle of related but independent theories, namely: (a) variational evolution; (b) gradualism rather than large leaps; (c) processes of phyletic evolution and of speciation; (d) causes for the formation of varying individuals in populations and for the action of selective agents; and (e) all organisms evolved from a common ancestor. The first four are nomological-deductive explanations and the fifth is historical-narrative. Therefore evolutionary theory must be divided (...)
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  • Analyzing the etiological functions of consciousness.Dylan Black - 2020 - Phenomenology and the Cognitive Sciences 20 (1):191-216.
    Scientists disagree about which capacities a functional analysis of consciousness should target. To address this disagreement, I propose that a good functional analysis should target the etiological functions of consciousness. The trouble is that most hypotheses about the etiological origins of consciousness presuppose particular functional analyses. In recent years, however, a small number of scientists have begun to offer evolutionary hypotheses that are relatively theory neutral. I argue that their hypotheses can serve an independent standard for evaluating among theories of (...)
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  • The emerging structure of the Extended Evolutionary Synthesis: where does Evo-Devo fit in?Alejandro Fábregas-Tejeda & Francisco Vergara-Silva - 2018 - Theory in Biosciences 137.
    The Extended Evolutionary Synthesis (EES) debate is gaining ground in contemporary evolutionary biology. In parallel, a number of philosophical standpoints have emerged in an attempt to clarify what exactly is represented by the EES. For Massimo Pigliucci, we are in the wake of the newest instantiation of a persisting Kuhnian paradigm; in contrast, Telmo Pievani has contended that the transition to an EES could be best represented as a progressive reformation of a prior Lakatosian scientific research program, with the extension (...)
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  • What Was Kant’s Contribution to the Understanding of Biology?Idan Shimony - 2017 - Kant Yearbook 9 (1):159-178.
    Kant’s theory of biology in the Critique of the Power of Judgment may be rejected as obsolete and attacked from two opposite perspectives. In light of recent advances in biology one can claim contra Kant, on the one hand, that biological phenomena, which Kant held could only be explicated with the help of teleological principles, can in fact be explained in an entirely mechanical manner, or on the other, that despite the irreducibility of biology to physico-mechanical explanations, it is nonetheless (...)
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  • Revisiting generality in biology: systems biology and the quest for design principles.Sara Green - 2015 - Biology and Philosophy 30 (5):629-652.
    Due to the variation, contingency and complexity of living systems, biology is often taken to be a science without fundamental theories, laws or general principles. I revisit this question in light of the quest for design principles in systems biology and show that different views can be reconciled if we distinguish between different types of generality. The philosophical literature has primarily focused on generality of specific models or explanations, or on the heuristic role of abstraction. This paper takes a different (...)
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  • Cosas que (no) se puede hacer con las lenguas: delimitarlas, contarlas, imaginarlas, confrontarlas….Guillermo Lorenzo González - 2009 - Teorema: International Journal of Philosophy 28 (1):177-190.
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  • Physiological linguistics, and some implications regarding disciplinary autonomy and unification.Samuel D. Epstein - 2007 - Mind and Language 22 (1):44–67.
    Chomsky's current Biolinguistic methodology is shown to comport with what might be called 'established' aspects of biological method, thereby raising, in the biolinguistic domain, issues concerning biological autonomy from the physical sciences. At least current irreducibility of biology, including biolinguistics, stems in at least some cases from the very nature of what I will claim is physiological, or inter-organ/inter-component, macro-levels of explanation which play a new and central explanatory role in Chomsky's inter-componential explanation of certain properties of the syntactic component (...)
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  • Michel Morange, The Black Box of Biology. A History of the Molecular Revolution. Trans. by M. Cobb (Cambridge, MA: Harvard University Press, 2020), 528 pp., $45.00, £36.95, €40.50 Hardback, ISBN: 9780674281363. [REVIEW]Koen B. Tanghe - 2020 - Journal of the History of Biology 53 (3):489-492.
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  • Subjectivity “Demystified”: Neurobiology, Evolution, and the Explanatory Gap.Todd E. Feinberg & Jon Mallatt - 2019 - Frontiers in Psychology 10.
    While life in general can be explained by the mechanisms of physics, chemistry and biology, to many scientists and philosophers it appears that when it comes to explaining consciousness, there is what the philosopher Joseph Levine called an “explanatory gap” between the physical brain and subjective experiences. Here we deduce the living and neural features behind primary consciousness within a naturalistic biological framework, identify which animal taxa have these features (the vertebrates, arthropods, and cephalopod molluscs), then reconstruct when consciousness first (...)
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  • Who is afraid of scientific imperialism?Roberto Fumagalli - 2018 - Synthese 195 (9):4125-4146.
    In recent years, several authors have debated about the justifiability of so-called scientific imperialism. To date, however, widespread disagreements remain regarding both the identification and the normative evaluation of scientific imperialism. In this paper, I aim to remedy this situation by making some conceptual distinctions concerning scientific imperialism and by providing a detailed assessment of the most prominent objections to it. I shall argue that these objections provide a valuable basis for opposing some instances of scientific imperialism, but do not (...)
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  • Emergence, Closure and Inter-level Causation in Biological Systems.Matteo Mossio, Leonardo Bich & Alvaro Moreno - 2013 - Erkenntnis 78 (2):153-178.
    In this paper, we advocate the idea that an adequate explanation of biological systems requires appealing to organizational closure as an emergent causal regime. We first develop a theoretical justification of emergence in terms of relatedness, by arguing that configurations, because of the relatedness among their constituents, possess ontologically irreducible properties, providing them with distinctive causal powers. We then focus on those emergent causal powers exerted as constraints, and we claim that biological systems crucially differ from other natural systems in (...)
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  • Enactivism and the Hegelian Stance on Intrinsic Purposiveness.Andrea Gambarotto & Matteo Mossio - 2022 - Phenomenology and the Cognitive Sciences 23 (1):155-177.
    We characterize Hegel’s stance on biological purposiveness as consisting in a twofold move, which conceives organisms as intrinsically purposive natural systems and focuses on their behavioral and cognitive abilities. We submit that a Hegelian stance is at play in enactivism, the branch of the contemporary theory of biological autonomy devoted to the study of cognition and the mind. What is at stake in the Hegelian stance is the elaboration of a naturalized, although non-reductive, understanding of natural purposiveness.
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  • Phenomenal Consciousness and Emergence: Eliminating the Explanatory Gap.Todd E. Feinberg & Jon Mallatt - 2020 - Frontiers in Psychology 11:537022.
    The role of emergence in the creation of consciousness has been debated for over a century, but it remains unresolved. In particular there is controversy over the claim that a “strong” or radical form of emergence is required to explain phenomenal consciousness. In this paper we use some ideas of complex system theory to trace the emergent features of life and then of complex brains through three progressive stages or levels: Level 1 (life), Level 2 (nervous systems), and Level 3 (...)
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  • The Five Marks of the Mental.Tuomas K. Pernu - 2017 - Frontiers in Psychology 8.
    The mental realm seems different to the physical realm; the mental is thought to be dependent on, yet distinct from the physical. But how, exactly, are the two realms supposed to be different, and what, exactly, creates the seemingly insurmountable juxtaposition between the mental and the physical? This review identifies and discusses five marks of the mental, features that set characteristically mental phenomena apart from the characteristically physical phenomena. These five marks (intentionality, consciousness, free will, teleology, and normativity) are not (...)
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  • Two directions for teleology: naturalism and idealism.Andrew Cooper - 2018 - Synthese 195 (7):3097-3119.
    Philosophers of biology claim that function talk is consistent with naturalism. Yet recent work in biology places new pressure on this claim. An increasing number of biologists propose that the existence of functions depends on the organisation of systems. While systems are part of the domain studied by physics, they are capable of interacting with this domain through organising principles. This is to say that a full account of biological function requires teleology. Does naturalism preclude reference to teleological causes? Or (...)
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  • Friedrich Miescher’s Discovery in the Historiography of Genetics: From Contamination to Confusion, from Nuclein to DNA.Sophie Juliane Veigl, Oren Harman & Ehud Lamm - 2020 - Journal of the History of Biology 53 (3):451-484.
    In 1869, Johann Friedrich Miescher discovered a new substance in the nucleus of living cells. The substance, which he called nuclein, is now known as DNA, yet both Miescher’s name and his theoretical ideas about nuclein are all but forgotten. This paper traces the trajectory of Miescher’s reception in the historiography of genetics. To his critics, Miescher was a “contaminator,” whose preparations were impure. Modern historians portrayed him as a “confuser,” whose misunderstandings delayed the development of molecular biology. Each of (...)
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  • What makes biology unique?Francisco Ayala - 2004 - History and Philosophy of the Life Sciences 26 (2):243-256.
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  • Current Bibliography of the History of Science and Its Cultural Influences 2005.Stephen P. Weldon - 2005 - Isis 96:1-242.
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  • Biological Principles and Threshold Concepts for Understanding Natural Selection.Lena A. E. Tibell & Ute Harms - 2017 - Science & Education 26 (7-9):953-973.
    Modern evolutionary theory is both a central theory and an integrative framework of the life sciences. This is reflected in the common references to evolution in modern science education curricula and contexts. In fact, evolution is a core idea that is supposed to support biology learning by facilitating the organization of relevant knowledge. In addition, evolution can function as a pivotal link between concepts and highlight similarities in the complexity of biological concepts. However, empirical studies in many countries have for (...)
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  • Overcoming the Limits of Quantification by Visualization.Isabella Sarto-Jackson & Richard R. Nelson - 2015 - Biological Theory 10 (3):253-262.
    Biological sciences have strived to adopt the conceptual framework of physics and have become increasingly quantitatively oriented, aiming to refute the assertion that biology appears unquantifiable, unpredictable, and messy. But despite all effort, biology is characterized by a paucity of quantitative statements with universal applications. Nonetheless, many biological disciplines—most notably molecular biology—have experienced an ascendancy over the last 50 years. The underlying core concepts and ideas permeate and inform many neighboring disciplines. This surprising success is probably not so much attributable (...)
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  • The Biological and Cultural Grounds for Ethics: Hans Jonas and Francisco Ayala.Francisco Quesada-Rodríguez - 2022 - Pensamiento. Revista de Investigación E Información Filosófica 78 (298 S. Esp):351-372.
    Regarding the epistemological borderlines between science and philosophy, this article approaches the human mind and ethics from biological and philosophical theories. For this purpose, the Darwinian theory of evolution by natural selection provides a scientific foundation to understand the human mind and ethics. However, not only Charles Darwin has studied mental faculties and ethics, this is also a topic researched by eminent contemporary paleontologists and biologists. Prior to modern biology, going back to Greek philosophy, philosophers have traditionally studied the human (...)
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  • Reverence ( ehrfurcht ) for the living world as the basic bioethical principle: Anthropological–pedagogical approach.Vasileios E. Pantazis - 2009 - Ethics, Place and Environment 12 (2):255 – 266.
    Nowadays, nature is something foreign to the human being. It is material that the human being uses, makes available, and exploits without scruples. But the human being is never a subject outside of space: he is always in lived and experienced relations to space, which determine and influence him. The individual is a member of a community of interdependent parts. In order to fulfil his or her life, the human being has to be able to listen to the voice of (...)
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  • The Case for Natural History.Heather King & Marianne Achiam - 2017 - Science & Education 26 (1-2):125-139.
    Fundamental knowledge of natural history is lacking in many western societies, as demonstrated by its absence in school science curricula. And yet, to meet local and global challenges such as environmental degradation, biodiversity loss and climate change, we need to better understand the living and non-living parts of the natural world. Many have argued passionately for an increased understanding of natural history; others have developed successful pedagogical programmes for applying knowledge of natural history in environmental initiatives. In joining wider calls, (...)
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  • The Holistic Claims of the Biopsychosocial Conception of WHO's International Classification of Functioning, Disability, and Health (ICF): A Conceptual Analysis on the Basis of a Pluralistic-Holistic Ontology and Multidimensional View of the Human being.H. M. Solli & A. Barbosa da Silva - 2012 - Journal of Medicine and Philosophy 37 (3):277-294.
    The International Classification of Functioning, Disability and Health (ICF), designed by the WHO, attempts to provide a holistic model of functioning and disability by integrating a medical model with a social one. The aim of this article is to analyze the ICF’s claim to holism. The following components of the ICF’s complexity are analyzed: (1) health condition, (2) body functions and structures, (3) activity, (4) participation, (5) environmental factors, (6) personal factors, and (7) health. Although the ICF claims to be (...)
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  • For the Sciences They Are A‐Changin’: A Response to Commentaries on Núñez et al.’s (2019) “What Happened to Cognitive Science?”.Rafael Núñez, Michael Allen, Richard Gao, Carson Miller Rigoli, Josephine Relaford-Doyle & Arturs Semenuks - 2020 - Topics in Cognitive Science 12 (3):790-803.
    A recent issue of Topics in Cognitive Science featured 11 thoughtful commentaries responding to our article “What happened to cognitive science?” (Núñez et al., 2019). Here, we identify several themes that arose in those commentaries and respond to each. Crucial to understanding our original article is the fundamental distinction between multidisciplinary and interdisciplinary endeavors: Cognitive science began (and has stayed) as multidisciplinary but has failed to move on to form a cohesive interdisciplinary field. We clarify and elaborate our original argument (...)
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  • Econophysics and the challenge of efficiency.Fabrizio Lillo - 2009 - Complexity 14 (3):39-54.
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  • Revisiting generality in the life sciences: Systems biology and the quest for general principles.Sara Green - unknown
    Due to the variation, contingency and complexity of living systems, biology is often taken to be a science without fundamental theories, laws or general principles. I revisit this question in light of the quest for design principles in systems biology and show that different views can be reconciled if we distinguish between different types of generality. The philosophical literature has primarily focused on generality of specific models or explanations, or on the heuristic role of abstraction. This paper takes a different (...)
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  • Explanatory Integration Challenges in Evolutionary Systems Biology.Sara Green, Melinda Fagan & Johannes Jaeger - 2015 - Biological Theory 10 (1):18-35.
    Evolutionary systems biology (ESB) aims to integrate methods from systems biology and evolutionary biology to go beyond the current limitations in both fields. This article clarifies some conceptual difficulties of this integration project, and shows how they can be overcome. The main challenge we consider involves the integration of evolutionary biology with developmental dynamics, illustrated with two examples. First, we examine historical tensions between efforts to define general evolutionary principles and articulation of detailed mechanistic explanations of specific traits. Next, these (...)
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  • Mayr and Tinbergen: disentangling and integrating.Brandon A. Conley - 2020 - Biology and Philosophy 35 (1):4.
    Research on animal behavior is typically organized according to a combination of two influential frameworks: Ernst Mayr’s distinction between proximate and ultimate causes, and Niko Tinbergen’s “four questions”. My aim is to debunk two common interpretive misconceptions about Mayr’s proximate–ultimate distinction and its relationship to Tinbergen’s four questions, and to offer a new interpretation that avoids both. The first misconception is that the proximate–ultimate distinction maps cleanly onto Tinbergen’s four questions, marking a boundary between Tinbergen’s evolutionary and survival value questions (...)
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  • Mayr and Tinbergen: disentangling and integrating.Brandon A. Conley - 2020 - Biology and Philosophy 35 (1):4.
    Research on animal behavior is typically organized according to a combination of two influential frameworks: Ernst Mayr’s distinction between proximate and ultimate causes, and Niko Tinbergen’s “four questions”. My aim is to debunk two common interpretive misconceptions about Mayr’s proximate–ultimate distinction and its relationship to Tinbergen’s four questions, and to offer a new interpretation that avoids both. The first misconception is that the proximate–ultimate distinction maps cleanly onto Tinbergen’s four questions, marking a boundary between Tinbergen’s evolutionary and survival value questions (...)
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  • Organic Codes: A Unifying Concept for Life.Gustavo Caponi, Francisco Prosdocimi & Savio Torres de Farias - 2021 - Acta Biotheoretica 69 (4):769-782.
    Although the knowledge about biological systems has advanced exponentially in recent decades, it is surprising to realize that the very definition of Life keeps presenting theoretical challenges. Even if several lines of reasoning seek to identify the essence of life phenomenon, most of these thoughts contain fundamental problem in their basic conceptual structure. Most concepts fail to identify either necessary or sufficient features to define life. Here, we analyzed the main conceptual frameworks regarding theoretical aspects that have been supporting the (...)
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