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  1. Agential Teleosemantics.Tiago Rama - 2022 - Dissertation, Autonomous University of Barcelona
    The field of the philosophy of biology is flourishing in its aim to evaluate and rethink the view inherited from the previous century ---the Modern Synthesis. Different research areas and theories have come to the fore in the last decades in order to account for different biological phenomena that, in the first instance, fall beyond the explanatory scope of the Modern Synthesis. This thesis is anchored and motivated by this revolt in the philosophy of biology. -/- The central target in (...)
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  • Are emotional states based in the brain? A critique of affective brainocentrism from a physiological perspective.Giovanna Colombetti & Eder Zavala - 2019 - Biology and Philosophy 34 (5):45.
    We call affective brainocentrism the tendency to privilege the brain over other parts of the organism when defining or explaining emotions. We distinguish two versions of this tendency. According to brain-sufficient, emotional states are entirely realized by brain processes. According to brain-master, emotional states are realized by both brain and bodily processes, but the latter are entirely driven by the brain: the brain is the master regulator of bodily processes. We argue that both these claims are problematic, and we draw (...)
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  • Genidentity and Biological Processes.Thomas Pradeu - 2018 - In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press.
    A crucial question for a process view of life is how to identify a process and how to follow it through time. The genidentity view can contribute decisively to this project. It says that the identity through time of an entity X is given by a well-identified series of continuous states of affairs. Genidentity helps address the problem of diachronic identity in the living world. This chapter describes the centrality of the concept of genidentity for David Hull and proposes an (...)
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  • Developmental Systems Theory as a Process Theory.Paul Edmund Griffiths & Karola Stotz - 2018 - In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press. pp. 225-245.
    Griffiths and Russell D. Gray (1994, 1997, 2001) have argued that the fundamental unit of analysis in developmental systems theory should be a process – the life cycle – and not a set of developmental resources and interactions between those resources. The key concepts of developmental systems theory, epigenesis and developmental dynamics, both also suggest a process view of the units of development. This chapter explores in more depth the features of developmental systems theory that favour treating processes as fundamental (...)
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  • Recent Work in The Philosophy of Biology.Christopher J. Austin - 2017 - Analysis 77 (2):412-432.
    The biological sciences have always proven a fertile ground for philosophical analysis, one from which has grown a rich tradition stemming from Aristotle and flowering with Darwin. And although contemporary philosophy is increasingly becoming conceptually entwined with the study of the empirical sciences with the data of the latter now being regularly utilised in the establishment and defence of the frameworks of the former, a practice especially prominent in the philosophy of physics, the development of that tradition hasn’t received the (...)
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  • Developmental Systems Theory.Paul Griffiths & Adam Hochman - 2015 - eLS:1-7.
    Developmental systems theory (DST) is a wholeheartedly epigenetic approach to development, inheritance and evolution. The developmental system of an organism is the entire matrix of resources that are needed to reproduce the life cycle. The range of developmental resources that are properly described as being inherited, and which are subject to natural selection, is far wider than has traditionally been allowed. Evolution acts on this extended set of developmental resources. From a developmental systems perspective, development does not proceed according to (...)
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  • G×E Interaction and Pluralism in the Postgenomic Era.Laurence Perbal - 2013 - Biological Theory 7 (3):266-274.
    Genetics is in a postgenomic era, and this article illustrates this epistemological evolution using the debate between developmental criticism and traditional biometric genetics about gene × environment interaction. Quantitative geneticists are blamed for failing to respect the complexity of development; as a response, they claim a defensive position, called isolationist pluralism, which supports the idea that studying development is not their problem. But postgenomics seems to have accepted and integrated some developmental criticisms and the isolationist perspective has been challenged during (...)
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  • Bridging the gap between developmental systems theory and evolutionary developmental biology†.Jason Scott Robert, Brian K. Hall & Wendy M. Olson - 2001 - Bioessays 23 (10):954-962.
    Many scientists and philosophers of science are troubled by the relative isolation of developmental from evolutionary biology. Reconciling the science of development with the science of heredity preoccupied a minority of biologists for much of the twentieth century, but these efforts were not corporately successful. Mainly in the past fifteen years, however, these previously dispersed integrating programmes have been themselves synthesized and so reinvigorated. Two of these more recent synthesizing endeavours are evolutionary developmental biology and developmental systems theory. While the (...)
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  • Moving Ourselves, Moving Others: Motion and Emotion in Intersubjectivity, Consciousness, and Language.Andrea Schiavio - 2015 - Philosophical Psychology 28 (5):735-739.
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  • Reference, Truth, and Biological Kinds.Marcel Weber - 2014 - In: J. Dutant, D. Fassio and A. Meylan (Eds.) Liber Amicorum Pascal Engel.
    This paper examines causal theories of reference with respect to how plausible an account they give of non-physical natural kind terms such as ‘gene’ as well as of the truth of the associated theoretical claims. I first show that reference fixism for ‘gene’ fails. By this, I mean the claim that the reference of ‘gene’ was stable over longer historical periods, for example, since the classical period of transmission genetics. Second, I show that the theory of partial reference does not (...)
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  • Varieties of parity.Ulrich E. Stegmann - 2012 - Biology and Philosophy 27 (6):903-918.
    A central idea of developmental systems theory is ‘parity’ or ‘symmetry’ between genes and non-genetic factors of development. The precise content of this idea remains controversial, with different authors stressing different aspects and little explicit comparisons among the various interpretations. Here I characterise and assess several influential versions of parity.
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  • The phylogeny fallacy and the ontogeny fallacy.Adam Hochman - 2013 - Biology and Philosophy 28 (4):593-612.
    In 1990 Robert Lickliter and Thomas Berry identified the phylogeny fallacy, an empirically untenable dichotomy between proximate and evolutionary causation, which locates proximate causes in the decoding of ‘ genetic programs’, and evolutionary causes in the historical events that shaped these programs. More recently, Lickliter and Hunter Honeycutt argued that Evolutionary Psychologists commit this fallacy, and they proposed an alternative research program for evolutionary psychology. For these authors the phylogeny fallacy is the proximate/evolutionary distinction itself, which they argue constitutes a (...)
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  • Genomic Programs as Mechanism Schemas: A Non-Reductionist Interpretation.Tudor M. Baetu - 2012 - British Journal for the Philosophy of Science 63 (3):649-671.
    In this article, I argue that genomic programs are not substitutes for multi-causal molecular mechanistic explanations of inheritance, but abstract representations of the same sort as mechanism schemas already described in the philosophical literature. On this account, the program analogy is not reductionistic and does not ignore or underestimate the active contribution of epigenetic elements to phenotypes and development. Rather, genomic program representations specifically highlight the genomic determinants of inheritance and their organizational features at work in the wider context of (...)
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  • Two Kinds of Causal Explanation.George Botterill - 2010 - Theoria 76 (4):287-313.
    To give a causal explanation is to give information about causal history. But a vast amount of causal history lies behind anything that happens, far too much to be included in any intelligible explanation. This is the Problem of Limitation for explanatory information. To cope with this problem, explanations must select for what is relevant to and adequate for answering particular inquiries. In the present paper this idea is used in order to distinguish two kinds of causal explanation, on the (...)
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  • John Cook Wilson.Mathieu Marion - 2010 - Stanford Encyclopedia of Philosophy.
    John Cook Wilson (1849–1915) was Wykeham Professor of Logic at New College, Oxford and the founder of ‘Oxford Realism’, a philosophical movement that flourished at Oxford during the first decades of the 20th century. Although trained as a classicist and a mathematician, his most important contribution was to the theory of knowledge, where he argued that knowledge is factive and not definable in terms of belief, and he criticized ‘hybrid’ and ‘externalist’ accounts. He also argued for direct realism in perception, (...)
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  • Causation in biology: Stability, specificity, and the choice of levels of explanation.James Woodward - 2010 - Biology and Philosophy 25 (3):287-318.
    This paper attempts to elucidate three characteristics of causal relationships that are important in biological contexts. Stability has to do with whether a causal relationship continues to hold under changes in background conditions. Proportionality has to do with whether changes in the state of the cause “line up” in the right way with changes in the state of the effect and with whether the cause and effect are characterized in a way that contains irrelevant detail. Specificity is connected both to (...)
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  • Difference mechanisms: Explaining variation with mechanisms.James Tabery - 2009 - Biology and Philosophy 24 (5):645-664.
    Philosophers of science have developed an account of causal-mechanical explanation that captures regularity, but this account neglects variation. In this article I amend the philosophy of mechanisms to capture variation. The task is to explicate the relationship between regular causal mechanisms responsible for individual development and causes of variation responsible for variation in populations. As it turns out, disputes over this relationship have rested at the heart of the nature–nurture debate. Thus, an explication of the relationship between regular causal mechanisms (...)
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  • (1 other version)Color subjectivism is not supported by color reductionism.Tom Seppalainen - 2001 - Philosophica (Belgium) 68 (2):61-87.
    If all the participants in the color ontology debate are naturalists with good sciences on their side, how could color subjectivism win? The apparent reason is that subjectivism is supported by the opponent process theory that is a successful neurophysiological reduction of colors. We will argue that the real reason is the unique reductive methodology of the opponent paradigm. We will undermine subjectivism by arguing against the methodology.
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  • Phenotype-first hypotheses, spandrels and early metazoan evolution.Joshua Rust - 2022 - History and Philosophy of the Life Sciences 44 (4):1-23.
    Against the neo-Darwinian assumption that genetic factors are the principal source of variation upon which natural selection operates, a phenotype-first hypothesis strikes us as revolutionary because development would seem to constitute an independent source of variability. Richard Watson and his co-authors have argued that developmental memory constitutes one such variety of phenotypic variability. While this version of the phenotype-first hypothesis is especially well-suited for the late metazoan context, where animals have a sufficient history of selection from which to draw, appeals (...)
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  • Psychopathic Personalities and Developmental Systems.Hane Htut Maung - 2021 - Philosophical Psychology 34 (4):502-528.
    Is psychopathy born or made? Contemporary psychopathy research shows that there is much wrong with this question. It is increasingly accepted that the development of psychopathy is dependent on multiple causal factors interacting with one another. However, there remains the major theoretical challenge of understanding the relations between these multiple causal factors in the developmental process. In this paper, I argue that the conventional picture of gene-environment interactionism does not offer an adequate account of psychopathy development. Instead, I propose that (...)
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  • Toolbox murders: putting genes in their epigenetic and ecological contexts: P. Griffiths and K. Stotz: Genetics and philosophy: an introduction. [REVIEW]Thomas Pradeu - 2016 - Biology and Philosophy 31 (1):125-142.
    Griffiths and Stotz’s Genetics and Philosophy: An Introduction offers a very good overview of scientific and philosophical issues raised by present-day genetics. Examining, in particular, the questions of how a “gene” should be defined and what a gene does from a causal point of view, the authors explore the different domains of the life sciences in which genetics has come to play a decisive role, from Mendelian genetics to molecular genetics, behavioural genetics, and evolution. In this review, I highlight what (...)
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  • The Dispositional Genome: Primus Inter Pares.Christopher J. Austin - 2015 - Biology and Philosophy 30 (2):227-246.
    According to the proponents of Developmental Systems Theory and the Causal Parity Thesis, the privileging of the genome as “first among equals” with respect to the development of phenotypic traits is more a reflection of our own heuristic prejudice than of ontology - the underlying causal structures responsible for that specified development no more single out the genome as primary than they do other broadly “environmental” factors. Parting with the methodology of the popular responses to the Thesis, this paper offers (...)
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  • Existentialism as Biology.Ronald de Sousa - 2010 - Emotion Review 2 (1):76-83.
    Existentialism is compatible with a broadly biological vision of who we are. This thesis is grounded in an analysis of “concrete” or “individual” possibility, which differs from standard conceptions of possibility in that it allows for possibilities to come into being or disappear through time. Concrete possibilities are introduced both in individual life and by major transitions in evolution. In particular, the advent of ultrasociality and of language has enabled human goals to be formulated in partial independence from the vestigial (...)
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  • Extended inheritance from an organizational point of view.Gaëlle Pontarotti - 2015 - History and Philosophy of the Life Sciences 37 (4):430-448.
    In this paper, I argue that the increasing data about non-genetic inheritance requires the construction of a new conceptual framework that should complement the inclusive approaches already discussed in the literature. More precisely, I hold that this framework should be epistemologically relevant for evolutionary biologists in capturing the limits of extended inheritance and in reassessing the boundaries of biological systems that transmit traits to their offspring. I outline the first elements of an organizational account of extended inheritance. In this account, (...)
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  • Genes after the human genome project.Tudor M. Baetu - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):191-201.
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  • Fine-tuning nativism: the 'nurtured nature' and innate cognitive structures.Slobodan Perovic & Ljiljana Radenovic - 2011 - Phenomenology and the Cognitive Sciences 10 (3):399-417.
    S. Oyama’s prominent account of the Parity Thesis states that one cannot distinguish in a meaningful way between nature-based (i.e. gene-based) and nurture-based (i.e. environment-based) characteristics in development because the information necessary for the resulting characteristics is contained at both levels. Oyama as well as P. E. Griffiths and K. Stotz argue that the Parity Thesis has far-reaching implications for developmental psychology in that both nativist and interactionist developmental accounts of psychological capacities that presuppose a substantial nature/nurture dichotomy are inadequate. (...)
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  • What Is It Like To Be an Environment? A Semantic and Epistemological Inquiry.Philippe Huneman - 2021 - Biological Theory 17 (1):94-112.
    In this article, I consider the term “environment” in various claims and models by evolutionists and ecologists. I ask whether “environment” is amenable to a philosophical explication, in the same way some key terms of evolutionary theorizing such as “fitness,” “species,” or more recently “population” have been. I will claim that it cannot. In the first section, I propose a typology of theoretical terms, according to whether they are univocal or equivocal, and whether they have been the object of formal (...)
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  • Ethischer Diskurs zu Epigenetik und Genomeditierung: die Gefahr eines (epi-)genetischen Determinismus und naturwissenschaftlich strittiger Grundannahmen.Karla Karoline Sonne Kalinka Alex & Eva C. Winkler - 2021 - In Boris Fehse, Ferdinand Hucho, Sina Bartfeld, Stephan Clemens, Tobias Erb, Heiner Fangerau, Jürgen Hampel, Martin Korte, Lilian Marx-Stölting, Stefan Mundlos, Angela Osterheider, Anja Pichl, Jens Reich, Hannah Schickl, Silke Schicktanz, Jochen Taupitz, Jörn Walter, Eva Winkler & Martin Zenke (eds.), Fünfter Gentechnologiebericht: Sachstand und Perspektiven für Forschung und Anwendung. pp. 299-323.
    Slightly modified excerpt from the section 13.4 Zusammenfassung und Ausblick (translated into englisch): This chapter is based on an analysis of ethical debates on epigenetics and genome editing, debates, in which ethical arguments relating to future generations and justice play a central role. The analysis aims to contextualize new developments in genetic engineering, such as genome and epigenome editing, ethically. At the beginning, the assumptions of "genetic determinism," on which "genetic essentialism" is based, of "epigenetic determinism" as well as "genetic" (...)
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  • Three Kinds of Constructionism: The Role of Metaphor in the Debate over Niche Constructionism.Emanuele Archetti - 2015 - Biological Theory 10 (2):103-115.
    Throughout the years a lively debate has flourished around niche construction theory. A source of contention has been the distinction between narrow and broad construction activities proposed by critics. Narrow construction is limited to the production of evolutionarily advantageous artifacts while broad construction refers to construction activities that have an impact on the ecosystem but offer little or negative adaptive feedback to the organisms. The first has been acknowledged as relevant to evolutionary studies in that it increases species’ fitness and (...)
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  • Making sense of the nature–nurture debate. [REVIEW]James Tabery - 2009 - Biology and Philosophy 24 (5):711-723.
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  • Development and microbiology.Aja Watkins - 2021 - Biology and Philosophy 36 (4):1-30.
    On the basis of findings from developmental biology, some researchers have argued that evolutionary theory needs to be significantly updated. Advocates of such a “developmental update” have, among other things, suggested that we need to re-conceptualize units of selection, that we should expand our view of inheritance to include environmental as well as genetic and epigenetic factors, that we should think of organisms and their environment as involved in reciprocal causation, and that we should reevaluate the rates of evolutionary change. (...)
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  • Evolution, Development, and Human Social Cognition.Tyler J. Wereha & Timothy P. Racine - 2012 - Review of Philosophy and Psychology 3 (4):559-579.
    Explaining the causal origins of what are taken to be uniquely human capacities for understanding the mind in the first years of life is a primary goal of social cognitive development research, which concerns so called “theory of mind” or “mindreading” skills. We review and discuss particular examples of this research in the context of its underlying evolutionary conceptual framework known as the neo-Darwinian modern synthesis. It is increasingly recognized that the modern synthesis is limited in its neglect of developmental (...)
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  • (1 other version)On Griffiths and Gray’s Concept of Expanded and Diffused Inheritance.Francesca Merlin - 2007 - Biological Theory 5 (3):206-215.
    Developmental Systems Theory is a theoretical reinterpretation of biological phenomena that challenges the conventional gene-centered account of development and evolution. In this article, I focus on Griffiths and Gray’s version of DST and particularly analyze their reconceptualization of inheritance. First, I present their concept of expanded and diffused inheritance; then, I examine and criticize their rejection of the multiple inheritance system model; finally, I present and oppose Griffiths and Gray’s extension of what they call the “causal parity thesis” from development (...)
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  • (1 other version)On Griffiths and Gray’s Concept of Expanded and Diffused Inheritance.Francesca Merlin - 2010 - Biological Theory 5 (3):206-215.
    Developmental System Theory is a theoretical reinterpretation of biological phenomena challenging the conventional gene-centered account of development and evolution. In this paper, I focus on Griffiths and Gray’s version of Developmental Systems Theory and I particularly analyze their reconceptualization of inheritance. First, I present their concept of expanded and diffused inheritance; then, I examine and criticize their refusal of the multiple inheritance system model; finally, I present and contrast Griffiths and Gray’s extension of what they call the “causal parity thesis” (...)
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  • DDS: Dynamics of developmental systems. [REVIEW]Evelyn Fox Keller - 2005 - Biology and Philosophy 20 (2-3):409-416.
    The acronym Developmental systems theory (DST) has been introduced into the literature on development in at least three different contexts in recent years – twice for DST, and before that, for Dynamical Systems Theory – and in all cases, to designate a new perspective for understanding development. Subtle but significant differences in argument and aims distinguish these uses, and confound the difficulty of saying just what DST is. My aim in this paper is to disambiguate these different terms – both (...)
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  • Causal Parity and Externalisms: Extensions in Life and Mind. [REVIEW]Philippe Huneman - 2013 - Minds and Machines 23 (3):377-404.
    This paper questions the form and prospects of “extended theories” which have been simultaneously and independently advocated both in the philosophy of mind and in the philosophy of biology. It focuses on Extend Mind Theory (EMT) and Developmental Systems Theory (DST). It shows first that the two theories vindicate a parallel extension of received views, the former concerning extending cognition beyond the brain, the latter concerned with extending evolution and development beyond the genes. It also shows that both arguments rely (...)
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