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Bacterial communication

Biology and Philosophy 36 (4):1-19 (2021)

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  1. Signals are minimal causes.Marc Artiga - 2021 - Synthese 198 (9):8581-8599.
    Although the definition of ‘signal’ has been controversial for some time within the life sciences, current approaches seem to be converging toward a common analysis. This powerful framework can satisfactorily accommodate many cases of signaling and captures some of its main features. This paper argues, however, that there is a central feature of signals that so far has been largely overlooked: its special causal role. More precisely, I argue that a distinctive feature of signals is that they are minimal causes. (...)
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  • A Mark of the Mental: A Defence of Informational Teleosemantics.Karen Neander - 2017 - Cambridge, USA: MIT Press.
    Drawing on insights from causal theories of reference, teleosemantics, and state space semantics, a theory of naturalized mental representation. In A Mark of the Mental, Karen Neander considers the representational power of mental states—described by the cognitive scientist Zenon Pylyshyn as the “second hardest puzzle” of philosophy of mind. The puzzle at the heart of the book is sometimes called “the problem of mental content,” “Brentano's problem,” or “the problem of intentionality.” Its motivating mystery is how neurobiological states can have (...)
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  • The New Mechanical Philosophy.Stuart Glennan - 2017 - Oxford: Oxford University Press.
    This volume argues for a new image of science that understands both natural and social phenomena to be the product of mechanisms, casting the work of science as an effort to understand those mechanisms. Glennan offers an account of the nature of mechanisms and of the models used to represent them in physical, life, and social sciences.
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  • Representation Reconsidered.William M. Ramsey - 2007 - Cambridge University Press.
    Cognitive representation is the single most important explanatory notion in the sciences of the mind and has served as the cornerstone for the so-called 'cognitive revolution'. This book critically examines the ways in which philosophers and cognitive scientists appeal to representations in their theories, and argues that there is considerable confusion about the nature of representational states. This has led to an excessive over-application of the notion - especially in many of the fresher theories in computational neuroscience. Representation Reconsidered shows (...)
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  • Levels of selection in biofilms: multispecies biofilms are not evolutionary individuals.Ellen Clarke - 2016 - Biology and Philosophy 31 (2):191-212.
    Microbes are generally thought of as unicellular organisms, but we know that many microbes live as parts of biofilms—complex, surface-attached microbial communities numbering millions of cells. Some authors have recently argued in favour of reconceiving biofilms as biological entities in their own right. In particular, some have claimed that multispecies biofilms are evolutionary individuals : 10126–10132 2015). Against this view, I defend the conservative consensus that selection acts primarily upon microbial cells.
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  • From quorum to cooperation: lessons from bacterial sociality for evolutionary theory.Pamela Lyon - 2007 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 38 (4):820-833.
    Copyright © 2007 Elsevier Ltd All rights reserved.
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  • Bacteria are small but not stupid: cognition, natural genetic engineering and socio-bacteriology.J. A. Shapiro - 2007 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 38 (4):807-819.
    Forty years’ experience as a bacterial geneticist has taught me that bacteria possess many cognitive, computational and evolutionary capabilities unimaginable in the first six decades of the twentieth century. Analysis of cellular processes such as metabolism, regulation of protein synthesis, and DNA repair established that bacteria continually monitor their external and internal environments and compute functional outputs based on information provided by their sensory apparatus. Studies of genetic recombination, lysogeny, antibiotic resistance and my own work on transposable elements revealed multiple (...)
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  • Philosophy of Microbiology.Maureen O'Malley - 2014 - Cambridge University Press.
    Microbes and microbiology are seldom encountered in philosophical accounts of the life sciences. Although microbiology is a well-established science and microbes the basis of life on this planet, neither the organisms nor the science have been seen as philosophically significant. This book will change that. It fills a major gap in the philosophy of biology by examining central philosophical issues in microbiology. Topics are drawn from evolutionary microbiology, microbial ecology, and microbial classification. These discussions are aimed at philosophers and scientists (...)
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  • Introduction: Key Levels of Biocommunication of Bacteria.Guenther Witzany - 2010 - In Günther Witzany (ed.), Biocommunication in Soil Microorganisms. Springer. pp. 1--34.
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  • The functional sense of mechanism.Justin Garson - 2013 - Philos Sci 80 (3):317-333.
    This article presents a distinct sense of ‘mechanism’, which I call the functional sense of mechanism. According to this sense, mechanisms serve functions, and this fact places substantive restrictions on the kinds of system activities ‘for which’ there can be a mechanism. On this view, there are no mechanisms for pathology; pathologies result from disrupting mechanisms for functions. Second, on this sense, natural selection is probably not a mechanism for evolution because it does not serve a function. After distinguishing this (...)
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  • Biological individuality: the case of biofilms.Marc Ereshefsky & Makmiller Pedroso - 2013 - Biology and Philosophy 28 (2):331-349.
    This paper examines David Hull’s and Peter Godfrey-Smith’s accounts of biological individuality using the case of biofilms. Biofilms fail standard criteria for individuality, such as having reproductive bottlenecks and forming parent-offspring lineages. Nevertheless, biofilms are good candidates for individuals. The nature of biofilms shows that Godfrey-Smith’s account of individuality, with its reliance on reproduction, is too restrictive. Hull’s interactor notion of individuality better captures biofilms, and we argue that it offers a better account of biological individuality. However, Hull’s notion of (...)
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  • Origins of Objectivity.Tyler Burge - 2010 - Oxford, GB: Oxford University Press.
    Tyler Burge presents an original study of the most primitive ways in which individuals represent the physical world. By reflecting on the science of perception and related psychological and biological sciences, he gives an account of constitutive conditions for perceiving the physical world, and thus aims to locate origins of representational mind.
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  • A teleosemantic approach to information in the brain.Rosa Cao - 2012 - Biology and Philosophy 27 (1):49-71.
    The brain is often taken to be a paradigmatic example of a signaling system with semantic and representational properties, in which neurons are senders and receivers of information carried in action potentials. A closer look at this picture shows that it is not as appealing as it might initially seem in explaining the function of the brain. Working from several sender-receiver models within the teleosemantic framework, I will first argue that two requirements must be met for a system to support (...)
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  • A consumer‐based teleosemantics for animal signals.Ulrich E. Stegmann - 2009 - Philosophy of Science 76 (5):864-875.
    Ethological theory standardly attributes representational content to animal signals. In this article I first assess whether Ruth Millikan’s teleosemantic theory accounts for the content of animal signals. I conclude that it does not, because many signals do not exhibit the required sort of cooperation between signal‐producing and signal‐consuming devices. It is then argued that Kim Sterelny’s proposal, while not requiring cooperation, sometimes yields the wrong content. Finally, I outline an alternative view, according to which consumers alone are responsible for conferring (...)
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  • The arbitrariness of the genetic code.Ulrich E. Stegmann - 2004 - Biology and Philosophy 19 (2):205-222.
    The genetic code has been regarded as arbitrary in the sense that the codon-amino acid assignments could be different than they actually are. This general idea has been spelled out differently by previous, often rather implicit accounts of arbitrariness. They have drawn on the frozen accident theory, on evolutionary contingency, on alternative causal pathways, and on the absence of direct stereochemical interactions between codons and amino acids. It has also been suggested that the arbitrariness of the genetic code justifies attributing (...)
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  • Bacteria, sex, and systematics.L. R. Franklin - 2007 - Philosophy of Science 74 (1):69-95.
    Philosophical discussions of species have focused on multicellular, sexual animals and have often neglected to consider unicellular organisms like bacteria. This article begins to fill this gap by considering what species concepts, if any, apply neatly to the bacterial world. First, I argue that the biological species concept cannot be applied to bacteria because of the variable rates of genetic transfer between populations, depending in part on which gene type is prioritized. Second, I present a critique of phylogenetic bacterial species, (...)
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  • Thinking about mechanisms.Peter Machamer, Lindley Darden & Carl F. Craver - 2000 - Philosophy of Science 67 (1):1-25.
    The concept of mechanism is analyzed in terms of entities and activities, organized such that they are productive of regular changes. Examples show how mechanisms work in neurobiology and molecular biology. Thinking in terms of mechanisms provides a new framework for addressing many traditional philosophical issues: causality, laws, explanation, reduction, and scientific change.
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  • (1 other version)Misrepresenting and malfunctioning.Karen Neander - 1995 - Philosophical Studies 79 (2):109-41.
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  • Representation and explanation.David Papineau - 1984 - Philosophy of Science 51 (December):550-72.
    Functionalism faces a problem in accounting for the semantic powers of beliefs and other mental states. Simple causal considerations will not solve this problem, nor will any appeal to the social utility of semantic interpretations. The correct analysis of semantic representation is a teleological one, in terms of the biological purposes of mental states: whereas functionalism focuses, so to speak, only on the structure of the cognitive mechanism, the semantic perspective requires in addition that we consider the purposes of the (...)
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  • Out of our skull, in our skin: the Microbiota-Gut-Brain axis and the Extended Cognition Thesis.Federico Boem, Gabriele Ferretti & Silvano Zipoli Caiani - 2021 - Biology and Philosophy 36 (2):1-32.
    According to a shared functionalist view in philosophy of mind, a cognitive system, and cognitive function thereof, is based on the components of the organism it is realized by which, indeed, play a causal role in regulating our cognitive processes. This led philosophers to suggest also that, thus, cognition could be seen as an extended process, whose vehicle can extend not only outside the brain but also beyond bodily boundaries, on different kinds of devices. This is what we call the (...)
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  • Synthetic Modelling of Biological Communication: A Theoretical and Operational Framework for the Investigation of Minimal Life and Cognition.Leonardo Bich & Ramiro Frick - 2018 - Complex Systems 27 (3):267-287.
    This paper analyses conceptual and experimental work in synthetic biology on different types of interactions considered as minimal examples or models of communication. It discusses their pertinence and relevance for the wider understanding of this biological and cognitive phenomenon. It critically analyses their limits and it argues that a conceptual framework is needed. As a possible solution, it provides a theoretical account of communication based on the notion of organisation, and characterised in terms of the functional influence exerted by the (...)
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  • Representation and the active consumer.Patrick Butlin - 2020 - Synthese 197 (10):4533-4550.
    One of the central tasks for naturalistic theories of representation is to say what it takes for something to be a representation, and some leading theories have been criticised for being too liberal. Prominent discussions of this problem have proposed a producer-oriented solution; it is argued that representations must be produced by systems employing perceptual constancy mechanisms. However, representations may be produced by simple transducers if they are consumed in the right way. It is characteristic of representations to be consumed (...)
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  • Signals: Evolution, Learning, and Information.Brian Skyrms - 2010 - Oxford, GB: Oxford University Press.
    Brian Skyrms offers a fascinating demonstration of how fundamental signals are to our world. He uses various scientific tools to investigate how meaning and communication develop. Signals operate in networks of senders and receivers at all levels of life, transmitting and processing information. That is how humans and animals think and interact.
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  • Arbitrary Signals and Cognitive Complexity.Ronald J. Planer & David Kalkman - 2021 - British Journal for the Philosophy of Science 72 (2):563-586.
    The arbitrariness of a signal has long been seen as a theoretically important but difficult to pin down notion. In this article, we suggest there are at least two different notions of arbitrariness at play in philosophical and scientific debates concerning the use of arbitrary signals, and work towards improved analyses of both. We then consider how these different types of arbitrariness can co-occur and come apart. Finally, we examine the connections between these two types of arbitrariness and the cognitive (...)
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  • Language, Thought, and Other Biological Categories.Ruth Garrett Millikan - 1984 - Behaviorism 14 (1):51-56.
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  • Misrepresenting & Malfunctioning.Karen Neander - 1995 - Philosophical Studies 79 (2):109-141.
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  • (1 other version)Misrepresenting & malfunctioning.Karen Neander - 1995 - Philos Stud 79 (2):109-141.
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  • Perceptual representations: a teleosemantic answer to the breadth-of-application problem.Peter Https://Orcidorg288X Schulte - 2015 - Biology and Philosophy 30 (1):119-136.
    Teleosemantic theories of representation are often criticized as being “too liberal”, i.e. as categorizing states as representations which are not representational at all. Recently, a powerful version of this objection has been put forth by Tyler Burge. Focusing on perception, Burge defends the claim that all teleosemantic theories apply too broadly, thereby missing what is distinctive about representation. Contra Burge, I will argue in this paper that there is a teleosemantic account of perceptual states that does not fall prey to (...)
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  • Abilities.John Maier - 2010 - Stanford Encyclopedia of Philosophy.
    In the accounts we give of one another, claims about our abilities appear to be indispensable. Some abilities are so widespread that many who have them take them for granted, such as the ability to walk, or to write one's name, or to tell a hawk from a handsaw. Others are comparatively rare and notable, such as the ability to hit a Major League fastball, or to compose a symphony, or to tell an elm from a beech. In either case, (...)
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  • What could arsenic bacteria teach us about life?Emily C. Parke - 2013 - Biology and Philosophy 28 (2):205-218.
    In this paper, I discuss the recent discovery of alleged arsenic bacteria in Mono Lake, California, and the ensuing debate in the scientific community about the validity and significance of these results. By situating this case in the broader context of projects that search for anomalous life forms, I examine the methodology and upshots of challenging biochemical constraints on living things. I distinguish between a narrower and a broader sense in which we might challenge or change our knowledge of life (...)
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  • Basic minds.Kim Sterelny - 1995 - Philosophical Perspectives 9 (AI, Connectionism and Philosophi):251-70.
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