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The Evolution of Complexity

In Barberousse Anouk, Morange M. & Pradeau T. (eds.), Mapping the Future of Biology. Boston Studies in the Philosophy of Science, vol 266. Springer (2009)

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  1. The developmental systems perspective: Organism-environment systems as units of development and evolution.Paul E. Griffiths & Russell D. Gray - 2004 - In Massimo Pigliucci & Katherine A. Preston (eds.), Phenotypic Integration: Studying the Ecology and Evolution of Complex Phenotypes. Oxford University Press. pp. 409-431.
    Developmental systems theory is an attempt to sum up the ideas of a research tradition in developmental psychobiology that goes back at least to Daniel Lehrman’s work in the 1950s. It yields a representation of evolution that is quite capable of accommodating the traditional themes of natural selection and also the new results that are emerging from evolutionary developmental biology. But it adds something else - a framework for thinking about development and evolution without the distorting dichotomization of biological processes (...)
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  • The Order of Things: An Archeology of the Human Sciences.Michel Foucault - 1994 - London: Routledge.
    When one defines "order" as a sorting of priorities, it becomes beautifully clear as to what Foucault is doing here. With virtuoso showmanship, he weaves an intensely complex history of thought. He dips into literature, art, economics and even biology in The Order of Things, possibly one of the most significant, yet most overlooked, works of the twentieth century. Eclipsed by his later work on power and discourse, nonetheless it was The Order of Things that established Foucault's reputation as an (...)
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  • The Triple Helix: Gene, Organism, and Environment.Richard Lewontin - 2000 - Journal of the History of Biology 33 (3):611-612.
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  • The Growth of Biological Thought: Diversity, Evolution, and Inheritance.Ernst Mayr - 1982 - Harvard University Press.
    Explores the development of the ideas of evolutionary biology, particularly as affected by the increasing understanding of genetics and of the chemical basis of inheritance.
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  • The Structure of Biological Science.Alexander Rosenberg - 1987 - British Journal for the Philosophy of Science 38 (1):119-121.
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  • Instrumental Biology or the Disunity of Science.Alexander Rosenberg - 1997 - Philosophical Quarterly 47 (186):120-122.
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  • Evolution and the Levels of Selection.Samir Okasha - 2009 - Critica 41 (123):162-170.
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  • Cycles of Contingency: Developmental Systems and Evolution.Susan Oyama, Paul Griffiths & Russell D. Gray (eds.) - 2001 - MIT Press.
    The nature/nurture debate is not dead. Dichotomous views of development still underlie many fundamental debates in the biological and social sciences. Developmental systems theory offers a new conceptual framework with which to resolve such debates. DST views ontogeny as contingent cycles of interaction among a varied set of developmental resources, no one of which controls the process. These factors include DNA, cellular and organismic structure, and social and ecological interactions. DST has excited interest from a wide range of researchers, from (...)
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  • measures of complexity.Seth Lloyd - 2001 - Control Systems Magazine 21 (4).
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  • Complexity and the Function of Mind in Nature.Peter Godfrey-Smith (ed.) - 1996 - New York: Cambridge University Press.
    This book explains the relationship between intelligence and environmental complexity, and in so doing links philosophy of mind to more general issues about the relations between organisms and environments, and to the general pattern of 'externalist' explanations. The author provides a biological approach to the investigation of mind and cognition in nature. In particular he explores the idea that the function of cognition is to enable agents to deal with environmental complexity. The history of the idea in the work of (...)
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  • The Structure of Biological Science.Alexander Rosenberg - 1985 - New York: Cambridge University Press.
    This book provides a comprehensive guide to the conceptual methodological, and epistemological problems of biology, and treats in depth the major developments in molecular biology and evolutionary theory that have transformed both biology and its philosophy in recent decades. At the same time the work is a sustained argument for a particular philosophy of biology that unifies disparate issues and offers a framework for expectations about the future directions of the life sciences. The argument explores differences between autonomist and anti-autonomist (...)
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  • Embryology, Epigenesis and Evolution: Taking Development Seriously.Jason Scott Robert - 2004 - Cambridge University Press.
    Historically, philosophers of biology have tended to sidestep the problem of development by focusing primarily on evolutionary biology and, more recently, on molecular biology and genetics. Quite often too, development has been misunderstood as simply, or even primarily, a matter of gene activation and regulation. Nowadays a growing number of philosophers of science are focusing their analyses on the complexities of development, and in Embryology, Epigenesis and Evolution Jason Scott Robert explores the nature of development against current trends in biological (...)
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  • Philosophy of Experimental Biology.Marcel Weber - 2004 - Cambridge University Press.
    Philosophy of Experimental Biology explores some central philosophical issues concerning scientific research in experimental biology, including genetics, biochemistry, molecular biology, developmental biology, neurobiology, and microbiology. It seeks to make sense of the explanatory strategies, concepts, ways of reasoning, approaches to discovery and problem solving, tools, models and experimental systems deployed by scientific life science researchers and also integrates developments in historical scholarship, in particular the New Experimentalism. It concludes that historical explanations of scientific change that are based on local laboratory (...)
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  • Who is a Modeler?Michael Weisberg - 2007 - British Journal for the Philosophy of Science 58 (2):207-233.
    Many standard philosophical accounts of scientific practice fail to distinguish between modeling and other types of theory construction. This failure is unfortunate because there are important contrasts among the goals, procedures, and representations employed by modelers and other kinds of theorists. We can see some of these differences intuitively when we reflect on the methods of theorists such as Vito Volterra and Linus Pauling on the one hand, and Charles Darwin and Dimitri Mendeleev on the other. Much of Volterra's and (...)
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  • Epigenetic Inheritance and Evolution: The Lamarckian Dimension.Eva Jablonka & Marion J. Lamb - 1995 - Oxford University Press UK.
    '...a challenging and useful book, both because it provokes a careful scrutiny of one's own basic ideas regarding evolutionary theory, and because it cuts across so many biological disciplines.' -The Quarterly Review of Biology 'In my view, this work exemplifies Theoretical Biology at its best...here is rampant speculation that is consistently based on cautious reasoning from the available data. Even more refreshing is the absence of sloganeering, grandstanding, and 'isms'.' -Biology and Philosophy 'Epigenetics is fundamental to understanding both development and (...)
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  • The Organism as the Subject and Object of Evolution.Richard C. Lewontin - 1983 - Scientia 77 (18):65.
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  • Wonderful Life; The Burgess Shale and the Nature of History.Stephen Jay Gould - 1992 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 23 (2):359-360.
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  • Investigations.Stuart A. Kauffman - 2000 - Oxford University Press.
    A fascinating exploration of the very essence of life itself sheds new light on the order and evolution in complex life systems and defines and explains autonomous agents and work within the contexts of thermodynamics and information theory, setting the stage for a dramatic technological revolution. 50,000 first printing.
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  • At Home in the Universe: The Search for Laws of Self-organization and Complexity.Stuart Kauffman & Stuart A. Kauffman - 1995 - Oxford University Press USA.
    At Home in the Universe presents and extends the intellectual core ofKauffman's earlier book The Origins of Order (OUP 1993) for any intelligentgeneral reader can understand and appreciate. The reader is very effectivelyinvited into Kauffman's vision and thought processes, in one of the moreexhilarating and important books of popular science.
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  • The Origins of Order: Self Organization and Selection in Evolution.Stuart A. Kauffman - 1993 - Oxford University Press.
    Stuart Kauffman here presents a brilliant new paradigm for evolutionary biology, one that extends the basic concepts of Darwinian evolution to accommodate recent findings and perspectives from the fields of biology, physics, chemistry and mathematics. The book drives to the heart of the exciting debate on the origins of life and maintenance of order in complex biological systems. It focuses on the concept of self-organization: the spontaneous emergence of order widely observed throughout nature. Kauffman here argues that self-organization plays an (...)
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  • Not in Our Genes: Biology, Ideology and Human Nature.Steven Rose, Richard Charles Lewontin & Leon J. Kamin - 1984 - Pantheon.
    Three eminent scientists analyze the scientific, social, and political roots of biological determinism.
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  • What Genes Can't Do.Lenny Moss - 2003 - MIT Press.
    A historical and critical analysis of the concept of the gene that attempts to provide new perspectives and metaphors for the transformation of biology and its philosophy.
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  • The Cybernetics Group.Steve J. Heims - 1991 - MIT Press (MA).
    This is the engaging story of a moment of transformation in the human sciences, a detailed account of a remarkable group of people who met regularly to explore the possibility of using scientific ideas that had emerged in the war years as a basis for interdisciplinary alliances.
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  • How We Became Posthuman: Virtual Bodies in Cybernetics, Literature, and Informatics.N. Katherine Hayles - 1999 - University of Chicago Press.
    In this age of DNA computers and artificial intelligence, information is becoming disembodied even as the "bodies" that once carried it vanish into virtuality. While some marvel at these changes, envisioning consciousness downloaded into a computer or humans "beamed" _Star Trek_-style, others view them with horror, seeing monsters brooding in the machines. In _How We Became Posthuman,_ N. Katherine Hayles separates hype from fact, investigating the fate of embodiment in an information age. Hayles relates three interwoven stories: how information lost (...)
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  • Evolution in Four Dimensions: Genetic, Epigenetic, Behavioral, and Symbolic Variation in the History of Life.Eva Jablonka, Marion J. Lamb & Anna Zeligowski - 2005 - Bradford.
    Ideas about heredity and evolution are undergoing a revolutionary change. New findings in molecular biology challenge the gene-centered version of Darwinian theory according to which adaptation occurs only through natural selection of chance DNA variations. In Evolution in Four Dimensions, Eva Jablonka and Marion Lamb argue that there is more to heredity than genes. They trace four "dimensions" in evolution -- four inheritance systems that play a role in evolution: genetic, epigenetic, behavioral, and symbolic. These systems, they argue, can all (...)
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  • Der organismus AlS innerer Kampf der einfluss Von Wilhelm Roux auf Friedrich Nietzsche.Wolfgang Müller-Lauter - 1978 - Nietzsche Studien 7 (1):189.
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  • Model systems in developmental biology.Jessica A. Bolker - 1995 - Bioessays 17 (5):451-455.
    The practical criteria by which developmental biologists choose their model systems have evolutionary correlates. The result is a sample that is not merely small, but biased in particular ways, for example towards species with rapid, highly canalized development. These biases influence both data collection and interpretation, and our views of how development works and which aspects of it are important.
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  • Intelligent Design Creationism and Its Critics: Philosophical, Theological, and Scientifc Perspectives.Robert T. Pennock (ed.) - 2001 - MIT Press.
    An anthology of writings by proponents and critics of intelligent design creationism.
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  • Phenotypic Evolution: A Reaction Norm Perspective.Carl Schlichting & Massimo Pigliucci - 1998 - Sinauer.
    Phenotypic Evolution explicitly recognizes organisms as complex genetic-epigenetic systems developing in response to changing internal and external environments. As a key to a better understanding of how phenotypes evolve, the authors have developed a framework that centers on the concept of the Developmental Reaction Norm. This encompasses their views: (1) that organisms are better considered as integrated units than as disconnected parts (allometry and phenotypic integration); (2) that an understanding of ontogeny is vital for evaluating evolution of adult forms (ontogenetic (...)
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  • Phenotypic Integration: Studying the Ecology and Evolution of Complex Phenotypes.Massimo Pigliucci & Katherine A. Preston (eds.) - 2004 - Oxford University Press.
    A new voice in the nature-nurture debate can be heard at the interface between evolution and development. Phenotypic integration is a major growth area in research.
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  • The Evolutionary Origin of Complex Features.Richard E. Lenski - 2003 - 423 (May):139–144.
    A long-standing challenge to evolutionary theory has been whether it can explain the origin of complex organismal features. We examined this issue using digital organisms—computer programs that self-replicate, mutate, compete and evolve. Populations of digital organisms often evolved the ability to perform complex logic functions requiring the coordinated execution of many genomic instructions. Complex functions evolved by building on simpler functions that had evolved earlier, provided that these were also selectively favoured. However, no particular intermediate stage was essential for evolving (...)
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  • The Spandrels of San Marco and the Panglossian Paradigm: A Critique of the Adaptationist Programme.S. J. Gould & R. C. Lewontin - 1994 - In Elliott Sober (ed.), Conceptual Issues in Evolutionary Biology. The Mit Press. Bradford Books. pp. 73-90.
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  • Self-Extending Symbiosis: A Mechanism for Increasing Robustness Through Evolution.Hiroaki Kitano & Kanae Oda - 2006 - Biological Theory 1 (1):61-66.
    Robustness is a fundamental property of biological systems, observed ubiquitously across species and at different levels of organization from gene regulation to ecosystem. The theory of biological robustness argues that robustness fosters evolv-ability and that together they entail various tradeoffs as well as characteristic architectures and mechanisms. We argue that classes of biological systems have evolved to enhance their robustness by extending their system boundary through a series of symbioses with foreign biological entities . A series of major biological innovations (...)
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  • The Generation of Novelty: The Province of Developmental Biology.Scott F. Gilbert - 2006 - Biological Theory 1 (2):209-212.
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  • Genes: Philosophical Analyses Put to the Test.Karola Stotz & Paul Griffiths - 2004 - History and Philosophy of the Life Sciences 26 (1):5-28.
    This paper describes one complete and one ongoing empirical study in which philosophical analyses of the concept of the gene were operationalized and tested against questionnaire data obtained from working biologists to determine whether and when biologists conceive genes in the ways suggested. These studies throw light on how different gene concepts contribute to biological research. Their aim is not to arrive at one or more correct 'definitions' of the gene, but rather to map out the variation in the gene (...)
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  • On the origin of species.Charles Darwin - 1964 - New York: Oxford University Press. Edited by Gillian Beer.
    The present edition provides a detailed and accessible discussion ofhis theories and adds an account of the immediate responses to the book on publication.
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  • An introduction to cybernetics.W. Ross Ashby - 1956 - New York,: J. Wiley.
    We must, therefore, make a study of mechanism; but some introduction is advisable, for cybernetics treats the subject from a new, and therefore unusual, ...
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  • Of molecules and men.Francis Crick - 1966 - Seattle,: University of Washington Press.
    "In his third lecture Crick anticipates events and trends that have in fact come to pass in the past four decades, including the increasing use of computer technology and robotics in mind-brain research, explorations into right-side versus left-side uses of the brain, and controversies surrounding the existence of the soul."--BOOK JACKET.
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  • The sciences of the artificial.Herbert Alexander Simon - 1969 - [Cambridge,: M.I.T. Press.
    Continuing his exploration of the organization of complexity and the science of design, this new edition of Herbert Simon's classic work on artificial ...
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  • The analysis of variance and the analysis of causes.Richard C. Lewontin - 1974 - American Journal of Human Genetics 26 (3):400-11.
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  • Punctuated Equilibria: An Alternative to Phyletic Gradualism.Niles Eldredge & Stephen Jay Gould - 1972 - In Thomas J. M. Schopf (ed.), Models in Paleobiology. Freeman Cooper. pp. 82-115.
    They are correct that punctuated equilibria apply to sexually reproducing organisms and that morphological evolutionary change is regarded as largely (if not exclusively) correlated with speciation events. However, they err in suggesting that we attribute stasis strictly to "developmental constraints," which represent only one of a set of possible mechanisms that we have suggested for the causes of stasis. Others include habitat tracking and the internal structure of species themselves [for example, (2)].
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  • Developmental Constraints, Generative Entrenchment, and the Innate-Acquired Distinction.William C. Wimsatt - 1986 - In William Bechtel (ed.), Integrating Scientific Disciplines. University of Chicago Press. pp. 185--208.
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  • Chance and necessity.Jacques Monod - 1971 - New York,: Vintage Books.
    Change and necessity is a statement of Darwinian natural selection as a process driven by chance necessity, devoid of purpose or intent.
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  • The informational Gene and the substantial body: On the Generalization of evolutionary theory by abstraction.James R. Griesemer - 2005 - Poznan Studies in the Philosophy of the Sciences and the Humanities 86 (1):59-116.
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  • Information in biology.Peter Godfrey-Smith - 2007 - In David L. Hull & Michael Ruse (eds.), The Cambridge Companion to the Philosophy of Biology. New York: Cambridge University Press. pp. 103--119.
    The concept of information has acquired a strikingly prominent role in contemporary biology. This trend is especially marked within genetics, but it has also become important in other areas, such as evolutionary theory and developmental biology, particularly where these fields border on genetics. The most distinctive biological role for informational concepts, and the one that has generated the most discussion, is in the description of the relations between genes and the various structures and processes that genes play a role in (...)
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  • Evolution and the levels of selection.Samir Okasha - 2006 - New York: Oxford University Press.
    Does natural selection act primarily on individual organisms, on groups, on genes, or on whole species? The question of levels of selection - on which biologists and philosophers have long disagreed - is central to evolutionary theory and to the philosophy of biology. Samir Okasha's comprehensive analysis gives a clear account of the philosophical issues at stake in the current debate.
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  • The ancestor's tale: a pilgrimage to the dawn of evolution.Richard Dawkins - 2004 - Boston: Houghton Mifflin. Edited by Yan Wong.
    The renowned biologist and thinker Richard Dawkins presents his most expansive work yet: a comprehensive look at evolution, ranging from the latest developments in the field to his own provocative views. Loosely based on the form of Chaucer's Canterbury Tales, Dawkins's Tale takes us modern humans back through four billion years of life on our planet. As the pilgrimage progresses, we join with other organisms at the forty "rendezvous points" where we find a common ancestor. The band of pilgrims swells (...)
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  • The triple helix: gene, organism, and environment.Richard C. Lewontin - 2000 - Cambridge, Mass.: Harvard University Press. Edited by Richard C. Lewontin.
    One of our most brilliant evolutionary biologists, Richard Lewontin has also been a leading critic of those--scientists and non-scientists alike--who would misuse the science to which he has contributed so much. In The Triple Helix, Lewontin the scientist and Lewontin the critic come together to provide a concise, accessible account of what his work has taught him about biology and about its relevance to human affairs. In the process, he exposes some of the common and troubling misconceptions that misdirect and (...)
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  • Nature’s Purposes: Analyses of Function and Design in Biology.Colin Allen, Marc Bekoff & George V. Lauder (eds.) - 1997 - Cambridge: The MIT Press.
    This volume provides a guide to the discussion among biologists and philosophersabout the role of concepts such as function and design in an evolutionary understanding oflife.
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  • The variation of animals and plants under domestication.Charles Darwin - 1868 - Baltimore, Md.: Johns Hopkins University Press. Edited by Harriet Ritvo.
    The publication of Darwin's On the Origin of Species in 1859 ignited a public storm he neither wanted nor enjoyed. Having offered his book as a contribution to science, Darwin discovered to his dismay that it was received as an affront by many scientists and as a sacrilege by clergy and Christian citizens. To answer the criticism that his theory was a theory only, and a wild one at that, he published two volumes in 1868 to demonstrate that evolution was (...)
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