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Genidentity and Biological Processes

In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press (2018)

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  1. The dynamical hypothesis in cognitive science.Tim van Gelder - 1998 - Behavioral and Brain Sciences 21 (5):615-28.
    According to the dominant computational approach in cognitive science, cognitive agents are digital computers; according to the alternative approach, they are dynamical systems. This target article attempts to articulate and support the dynamical hypothesis. The dynamical hypothesis has two major components: the nature hypothesis (cognitive agents are dynamical systems) and the knowledge hypothesis (cognitive agents can be understood dynamically). A wide range of objections to this hypothesis can be rebutted. The conclusion is that cognitive systems may well be dynamical systems, (...)
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  • Philosophy of Mathematics and Natural Science.Stephen Toulmin - 1950 - Philosophical Review 59 (3):385.
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  • Ordinary Objects * By AMIE L.THOMASSON.Amie Thomasson - 2009 - Analysis 69 (1):173-174.
    In recent analytic metaphysics, the view that ‘ordinary inanimate objects such as sticks and stones, tables and chairs, simply do not exist’ has been defended by some noteworthy writers. Thomasson opposes such revisionary ontology in favour of an ontology that is conservative with respect to common sense. The book is written in a straightforward, methodical and down-to-earth style. It is also relatively non-specialized, enabling the author and her readers to approach problems that are often dealt with in isolation in a (...)
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  • Comments on a mechanistic conception of purposefulness.Richard Taylor - 1950 - Philosophy of Science 17 (4):310-317.
    In a highly original and provocative essay entitled “Behavior, Purpose and Teleology”, published a few years ago, Professors Arturo Rosenblueth, Norbert Wiener and Julian Bigelow attempt to indicate the scientific importance and usefulness of the concepts of purpose and teleology. Since this essay appeared the suggestions it contains seem to have acquired a significance which was not wholly apparent at that time. This is due primarily to the fact that a somewhat novel and, it appears to some, revolutionary approach to (...)
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  • Difference mechanisms: Explaining variation with mechanisms.James Tabery - 2009 - Biology and Philosophy 24 (5):645-664.
    Philosophers of science have developed an account of causal-mechanical explanation that captures regularity, but this account neglects variation. In this article I amend the philosophy of mechanisms to capture variation. The task is to explicate the relationship between regular causal mechanisms responsible for individual development and causes of variation responsible for variation in populations. As it turns out, disputes over this relationship have rested at the heart of the nature–nurture debate. Thus, an explication of the relationship between regular causal mechanisms (...)
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  • Science and the Modern World by Alfred North Whitehead. [REVIEW]William Curtis Swabey - 1926 - Philosophical Review 35 (3):272.
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  • A Probabilistic Theory of Causality.Alex C. Michalos - 1972 - Philosophy of Science 39 (4):560-561.
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  • Individuals: An Essay in Descriptive Metaphysics.James Cargile - 1959 - Journal of Symbolic Logic 38 (2):320-323.
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  • The ingredients for a postgenomic synthesis of nature and nurture.Karola Stotz - 2008 - Philosophical Psychology 21 (3):359 – 381.
    This paper serves as an introduction to the special issue on “Reconciling Nature and Nurture in Behavior and Cognition Research” and sets its agenda to resolve the 'interactionist' dichotomy of nature as the genetic, and stable, factors of development, and nurture as the environmental, and plastic influences. In contrast to this received view it promotes the idea that all traits, no matter how developmentally fixed or universal they seem, contingently develop out of a single-cell state through the interaction of a (...)
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  • The Category of Occurrent Continuants.Rowland Stout - 2016 - Mind 125 (497):41-62.
    Arguing first that the best way to understand what a continuant is is as something that primarily has its properties at a time rather than atemporally, the paper then defends the idea that there are occurrent continuants. These are things that were, are, or will be happening—like the ongoing process of someone reading or my writing this paper, for instance. A recently popular philosophical view of process is as something that is referred to with mass nouns and not count nouns. (...)
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  • Human nature and cognitive–developmental niche construction.Karola Stotz - 2010 - Phenomenology and the Cognitive Sciences 9 (4):483-501.
    Recent theories in cognitive science have begun to focus on the active role of organisms in shaping their own environment, and the role of these environmental resources for cognition. Approaches such as situated, embedded, ecological, distributed and particularly extended cognition look beyond ‘what is inside your head’ to the old Gibsonian question of ‘what your head is inside of’ and with which it forms a wider whole—its internal and external cognitive niche. Since these views have been treated as a radical (...)
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  • Varieties of parity.Ulrich E. Stegmann - 2012 - Biology and Philosophy 27 (6):903-918.
    A central idea of developmental systems theory is ‘parity’ or ‘symmetry’ between genes and non-genetic factors of development. The precise content of this idea remains controversial, with different authors stressing different aspects and little explicit comparisons among the various interpretations. Here I characterise and assess several influential versions of parity.
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  • The extended replicator.Kim Sterelny, Kelly C. Smith & Michael Dickison - 1996 - Biology and Philosophy 11 (3):377-403.
    This paper evaluates and criticises the developmental systems conception of evolution and develops instead an extension of the gene's eye conception of evolution. We argue (i) Dawkin's attempt to segregate developmental and evolutionary issues about genes is unsatisfactory. On plausible views of development it is arbitrary to single out genes as the units of selection. (ii) The genotype does not carry information about the phenotype in any way that distinguishes the role of the genes in development from that other factors. (...)
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  • Processes, Continuants, and Individuals.Helen Steward - 2013 - Mind 122 (487):fzt080.
    The paper considers and opposes the view that processes are best thought of as continuants, to be differentiated from events mainly by way of the fact that the latter, but not the former, are entities with temporal parts. The motivation for the investigation, though, is not so much the defeat of what is, in any case, a rather implausible claim, as the vindication of some of the ideas and intuitions that the claim is made in order to defend — and (...)
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  • I—What is a Continuant?Helen Steward - 2015 - Aristotelian Society Supplementary Volume 89 (1):109-123.
    In this paper, I explore the question what a continuant is, in the context of a very interesting suggestion recently made by Rowland Stout, as part of his attempt to develop a coherent ontology of processes. Stout claims that a continuant is best thought of as something that primarily has its properties at times, rather than atemporally—and that on this construal, processes should count as continuants. While accepting that Stout is onto something here, I reject his suggestion that we should (...)
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  • A process theory of enzyme catalytic power – the interplay of science and metaphysics.Ross L. Stein - 2006 - Foundations of Chemistry 8 (1):3-29.
    Enzymes are protein catalysts of extraordinary efficiency, capable of bringing about rate enhancements of their biochemical reactions that can approach factors of 1020. Theories of enzyme catalysis, which seek to explain the means by which enzymes effect catalytic transformation of the substrate molecules on which they work, have evolved over the past century from the “lock-and-key” model proposed by Emil Fischer in 1894 to models that explicitly rely on transition state theory to the most recent theories that strive to provide (...)
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  • Unto Others: The Evolution and Psychology of Unselfish Behavior.Paul E. Griffiths - 2002 - Mind 111 (441):178-182.
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  • Unto Others: The Evolution and Psychology of Unselfish Behavior.Elliott Sober & David Sloan Wilson - 1998 - Harvard University Press.
    The authors demonstrate that unselfish behavior is in fact an important feature of both biological and human nature. Their book provides a panoramic view of altruism throughout the animal kingdom--from self-sacrificing parasites to the human capacity for selflessness--even as it explains the evolutionary sense of such behavior.
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  • Reply to Alexander Rosenberg's Review of The Nature of Selection.Elliott Sober - 1986 - Behaviorism 14 (1):77-88.
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  • The nature of selection: evolutionary theory in philosophical focus.Elliott Sober - 1984 - Chicago: University of Chicago Press.
    The Nature of Selection is a straightforward, self-contained introduction to philosophical and biological problems in evolutionary theory. It presents a powerful analysis of the evolutionary concepts of natural selection, fitness, and adaptation and clarifies controversial issues concerning altruism, group selection, and the idea that organisms are survival machines built for the good of the genes that inhabit them. "Sober's is the answering philosophical voice, the voice of a first-rate philosopher and a knowledgeable student of contemporary evolutionary theory. His book merits (...)
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  • Evolution, population thinking, and essentialism.Elliott Sober - 1980 - Philosophy of Science 47 (3):350-383.
    Ernst Mayr has argued that Darwinian theory discredited essentialist modes of thought and replaced them with what he has called "population thinking". In this paper, I characterize essentialism as embodying a certain conception of how variation in nature is to be explained, and show how this conception was undermined by evolutionary theory. The Darwinian doctrine of evolutionary gradualism makes it impossible to say exactly where one species ends and another begins; such line-drawing problems are often taken to be the decisive (...)
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  • The Biology of the Spirit. [REVIEW]Y. H. Krikorian - 1956 - Journal of Philosophy 53 (16):502-506.
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  • Parts: a study in ontology.Peter M. Simons - 1987 - New York: Oxford University Press.
    Although the relationship of part to whole is one of the most fundamental there is, this is the first full-length study of this key concept. Showing that mereology, or the formal theory of part and whole, is essential to ontology, Simons surveys and critiques previous theories--especially the standard extensional view--and proposes a new account that encompasses both temporal and modal considerations. Simons's revised theory not only allows him to offer fresh solutions to long-standing problems, but also has far-reaching consequences for (...)
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  • How to Exist at a Time When You Have No Temporal Parts.Peter Simons - 2000 - The Monist 83 (3):419-436.
    Occurrents are entities that exist in time and, with few or no exceptions, extend over time as well, that is, they have parts corresponding to the different times at which they exist. This makes it very easy to say what makes it true that they exist at the times at which they do. Singular existential propositions, being contingent, positive and arguably atomic, stand in need of truth-makers, entities in virtue of whose existence they are true. The obvious candidate for what (...)
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  • Continuants and Occurrents.Peter Simons & Joseph Melia - 2000 - Aristotelian Society Supplementary Volume 74:59-92.
    Commonsense ontology contains both continuants and occurrents, but are continuants necessary? I argue that they are neither occurrents nor easily replaceable by them. The worst problem for continuants is the question in virtue of what a given continuant exists at a given time. For such truthmakers we must have recourse to occurrents, those vital to the continuant at that time. Continuants are, like abstract objects, invariants under equivalences over occurrents. But they are not abstract, and their being invariants enables us (...)
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  • Alfred North Whitehead’s Process and Reality.Peter Simons - 2015 - Topoi 34 (1):1-9.
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  • Abstraktion ohne abstrakte Gegenstande.Peter Simons - 2012 - Zeitschrift für Philosophische Forschung 66 (1):114-129.
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  • Four Dimensionalism: An Ontology of Persistence and Time.Theodore Sider - 2004 - Philosophy and Phenomenological Research 68 (3):642-647.
    Precis of my book by this title, for a symposium.
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  • Four Dimensionalism.Theodore Sider - 1997 - Philosophical Review 106 (2):197-231.
    Persistence through time is like extension through space. A road has spatial parts in the subregions of the region of space it occupies; likewise, an object that exists in time has temporal parts in the various subregions of the total region of time it occupies. This view — known variously as four dimensionalism, the doctrine of temporal parts, and the theory that objects “perdure” — is opposed to “three dimensionalism”, the doctrine that things “endure”, or are “wholly present”.1 I will (...)
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  • All the World’s a Stage.Theodore Sider - 1996 - Australasian Journal of Philosophy 74 (3):433 – 453.
    Some philosophers believe that everyday objects are 4-dimensional spacetime worms, that a person (for example) persists through time by having temporal parts, or stages, at each moment of her existence. None of these stages is identical to the person herself; rather, she is the aggregate of all her temporal parts.1 Others accept “three dimensionalism”, rejecting stages in favor of the notion that persons “endure”, or are “wholly present” throughout their lives.2 I aim to defend an apparently radical third view: not (...)
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  • Man on His Nature.Charles Sherrington - 1940 - Cambridge University Press.
    I NATURE AND TRADITION Quemcunque aegrum ingenio praestaittem curanJum invisebat , siquidem morbi vehementia pateretur, . . .familiarem cum eo sermonem aliquandiu conferebat, cum pbilosophis Pbilosopkica, cum Mathematicis Mathematica, ..
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  • Grammar and existence: A preface to ontology.Wilfrid Sellars - 1960 - Mind 69 (276):499-533.
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  • Foundations for a metaphysics of pure process: The Carus lectures of Wilfrid Sellars.Wilfrid Sellars - 1981 - The Monist 64 (1):3-90.
    1. The lever in question is, of course, that with which, provided that an appropriate fulcrum could be found, Archimedes could move the world. In the analogy I have in mind, the fulcrum is the given, by virtue of which the mind gets leverage on the world of knowledge.
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  • Ontological Scope and Linguistic Diversity: Are There Universal Categories?Johanna Seibt - 2015 - The Monist 98 (3):318-343.
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  • Non-countable [ndlviduals.Johanna Seibt - 1996 - Southwest Philosophy Review 12 (1):225-236.
    It is a common presupposition in ontology (metaphysics) that a so-called 'principle of individuation' amounts to a principle of counting. Against this presupposition I argue that the predicates 'x is the same individual as y' and 'x is one with y' are neither co-extensional nor co-intensional. Non-countable entities such as masses or stuffs (or the referents of nouns in classifier languages) also fulfill the requirements of individuality. I suggest that Leibniz' 'principle of the identity of indiscernibles' (PII) should be taken (...)
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  • Forms of emergent interaction in General Process Theory.Johanna Seibt - 2009 - Synthese 166 (3):479-512.
    General Process Theory (GPT) is a new (non-Whiteheadian) process ontology. According to GPT the domains of scientific inquiry and everyday practice consist of configurations of ‘goings-on’ or ‘dynamics’ that can be technically defined as concrete, dynamic, non-particular individuals called general processes. The paper offers a brief introduction to GPT in order to provide ontological foundations for research programs such as interactivism that centrally rely on the notions of ‘process,’ ‘interaction,’ and ‘emergence.’ I begin with an analysis of our common sense (...)
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  • Free process theory: Towards a typology of occurrings.Johanna Seibt - 2004 - Axiomathes 14 (1-3):23-55.
    The paper presents some essential heuristic and constructional elements of Free Process Theory (FPT), a non-Whiteheadian, monocategoreal framework. I begin with an analysis of our common sense concept of activities, which plays a crucial heuristic role in the development of the notion of a free process. I argue that an activity is not a type but a mode of occurrence, defined in terms of a network of inferences. The inferential space characterizing our concept of an activity entails that anything which (...)
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  • Constitution Theory and Metaphysical Neutrality.Johanna Seibt - 2000 - The Monist 83 (1):161-183.
    Carnap’s thought not only played a pivotal role for the development of formal semantics and modern philosophy of science, but also engendered the profound methodological reorientation that distinguishes analytical from traditional ontology. Historically and systematically, Carnap’s formal approach to category theory is the primary source of influence on the three research programs that have given analytical ontology its distinctive profile: the design of constructional systems, the investigation of the expressive power of first order theories, and the meta-linguistic reduction of abstract (...)
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  • Towards a more dynamic plant morphology.Rolf Sattler - 1990 - Acta Biotheoretica 38 (3-4):303-315.
    From the point of view of a dynamic morphology, form is not only the result of process(es) — it is process. This process may be analyzed in terms of two pairs of fundamental processes: growth and decay, differentiation and dedifferentiation. Each of these processes can be analyzed in terms of various modalities (parameters) and submodalities. This paper deals with those of growth (see Table 1). For the purpose of systematits and phylogenetic reconstruction the modalities and submodalities can be considered dynamic (...)
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  • Truth, Love and Immortality: An Introduction to McTaggart's Philosophy.David H. Sanford - 1982 - Philosophical Review 91 (3):445.
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  • Scientific Explanation and the Causal Structure of the World.Wesley C. Salmon - 1984 - Princeton University Press.
    The philosophical theory of scientific explanation proposed here involves a radically new treatment of causality that accords with the pervasively statistical character of contemporary science. Wesley C. Salmon describes three fundamental conceptions of scientific explanation--the epistemic, modal, and ontic. He argues that the prevailing view is untenable and that the modal conception is scientifically out-dated. Significantly revising aspects of his earlier work, he defends a causal/mechanical theory that is a version of the ontic conception. Professor Salmon's theory furnishes a robust (...)
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  • Scientific Explanation and the Causal Structure of the World. Wesley Salmon.James H. Fetzer - 1987 - Philosophy of Science 54 (4):597-610.
    If the decades of the forties through the sixties were dominated by discussion of Hempel's “covering law“ explication of explanation, that of the seventies was preoccupied with Salmon's “statistical relevance” conception, which emerged as the principal alternative to Hempel's enormously influential account. Readers of Wesley C. Salmon's Scientific Explanation and the Causal Structure of the World, therefore, ought to find it refreshing to discover that its author has not remained content with a facile defense of his previous investigations; on the (...)
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  • Biological Organization and Cross-Generation Functions.Cristian Saborido, Matteo Mossio & Alvaro Moreno - 2011 - British Journal for the Philosophy of Science 62 (3):583-606.
    The organizational account of biological functions interprets functions as contributions of a trait to the maintenance of the organization that, in turn, maintains the trait. As has been recently argued, however, the account seems unable to provide a unified grounding for both intra- and cross-generation functions, since the latter do not contribute to the maintenance of the same organization which produces them. To face this ‘ontological problem’, a splitting account has been proposed, according to which the two kinds of functions (...)
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  • From genotype to phenotype: buffering mechanisms and the storage of genetic information.Suzanne L. Rutherford - 2000 - Bioessays 22 (12):1095-1105.
    DNA sequence variation is abundant in wild populations. While molecular biologists use genetically homogeneous strains of model organisms to avoid this variation, evolutionary biologists embrace genetic variation as the material of evolution since heritable differences in fitness drive evolutionary change. Yet, the relationship between the phenotypic variation affecting fitness and the genotypic variation producing it is complex. Genetic buffering mechanisms modify this relationship by concealing the effects of genetic and environmental variation on phenotype. Genetic buffering allows the build-up and storage (...)
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  • Autonomy in evolution: from minimal to complex life.Kepa Ruiz-Mirazo & Alvaro Moreno - 2012 - Synthese 185 (1):21-52.
    Our aim in the present paper is to approach the nature of life from the perspective of autonomy, showing that this perspective can be helpful for overcoming the traditional Cartesian gap between the physical and cognitive domains. We first argue that, although the phenomenon of life manifests itself as highly complex and multidimensional, requiring various levels of description, individual organisms constitute the core of this multifarious phenomenology. Thereafter, our discussion focuses on the nature of the organization of individual living entities, (...)
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  • Bridging the gap between developmental systems theory and evolutionary developmental biology†.Jason Scott Robert, Brian K. Hall & Wendy M. Olson - 2001 - Bioessays 23 (10):954-962.
    Many scientists and philosophers of science are troubled by the relative isolation of developmental from evolutionary biology. Reconciling the science of development with the science of heredity preoccupied a minority of biologists for much of the twentieth century, but these efforts were not corporately successful. Mainly in the past fifteen years, however, these previously dispersed integrating programmes have been themselves synthesized and so reinvigorated. Two of these more recent synthesizing endeavours are evolutionary developmental biology and developmental systems theory. While the (...)
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  • A Breath of Fresh Air: Absence and the Structure of Olfactory Perception.Tom Roberts - 2016 - Pacific Philosophical Quarterly 97 (3):400-420.
    The question of whether we can perceive absences, in addition to ‘positives’, has received recent attention in the literature on the nature of vision and audition. The aim is to demonstrate that there can be objectless forms of perceptual consciousness; specifically, to show that such episodes can be distinguished from those in which there is merely no perception at all. The current article explores this question for the domain of olfaction, and argues that there can be experiences of the absence (...)
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  • The Direction of Time.Milic Capek - 1959 - Philosophy and Phenomenological Research 19 (3):402-405.
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  • VI.—Symposium: “Facts and Propositions.”.F. P. Ramsey & G. E. Moore - 1927 - Aristotelian Society Supplementary Volume 7 (1):153-206.
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  • Facts and Propositions.Frank P. Ramsey - 1927 - Aristotelian Society Supplementary Volume 7 (1):153-170.
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