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Genidentity and Biological Processes

In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press (2018)

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  1. Robustness and reality.Markus I. Eronen - 2015 - Synthese 192 (12):3961-3977.
    Robustness is often presented as a guideline for distinguishing the true or real from mere appearances or artifacts. Most of recent discussions of robustness have focused on the kind of derivational robustness analysis introduced by Levins, while the related but distinct idea of robustness as multiple accessibility, defended by Wimsatt, has received less attention. In this paper, I argue that the latter kind of robustness, when properly understood, can provide justification for ontological commitments. The idea is that we are justified (...)
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  • Eliminative pluralism.Marc Ereshefsky - 1992 - Philosophy of Science 59 (4):671-690.
    This paper takes up the cause of species pluralism. An argument for species pluralism is provided and standard monist objections to pluralism are answered. A new form of species pluralism is developed and shown to be an improvement over previous forms. This paper also offers a general foundation on which to base a pluralistic approach to biological classification.
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  • Biological individuality: the case of biofilms.Marc Ereshefsky & Makmiller Pedroso - 2013 - Biology and Philosophy 28 (2):331-349.
    This paper examines David Hull’s and Peter Godfrey-Smith’s accounts of biological individuality using the case of biofilms. Biofilms fail standard criteria for individuality, such as having reproductive bottlenecks and forming parent-offspring lineages. Nevertheless, biofilms are good candidates for individuals. The nature of biofilms shows that Godfrey-Smith’s account of individuality, with its reliance on reproduction, is too restrictive. Hull’s interactor notion of individuality better captures biofilms, and we argue that it offers a better account of biological individuality. However, Hull’s notion of (...)
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  • Scientific Essentialism.H. Beebee - 2004 - Mind 113 (450):334-340.
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  • Viruses as living processes.John Dupré & Stephan Guttinger - 2016 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 59:109-116.
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  • The Disorder of Things: Metaphysical Foundations of the Disunity of Science.John Dupré - 1993 - Harvard University Press.
    With this manifesto, John Dupré systematically attacks the ideal of scientific unity by showing how its underlying assumptions are at odds with the central conclusions of science itself.
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  • Living Causes.John Dupré - 2013 - Aristotelian Society Supplementary Volume 87 (1):19-37.
    This paper considers the applicability of standard accounts of causation to living systems. In particular it examines critically the increasing tendency to equate causal explanation with the identification of a mechanism. A range of differences between living systems and paradigm mechanisms are identified and discussed. While in principle it might be possible to accommodate an account of mechanism to these features, the attempt to do so risks reducing the idea of a mechanism to vacuity. It is proposed that the solution (...)
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  • I—John Dupré: Living Causes.John Dupré - 2013 - Aristotelian Society Supplementary Volume 87 (1):19-37.
    This paper considers the applicability of standard accounts of causation to living systems. In particular it examines critically the increasing tendency to equate causal explanation with the identification of a mechanism. A range of differences between living systems and paradigm mechanisms are identified and discussed. While in principle it might be possible to accommodate an account of mechanism to these features, the attempt to do so risks reducing the idea of a mechanism to vacuity. It is proposed that the solution (...)
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  • A process ontology for biology.John Dupré - 2014 - The Philosophers' Magazine 67:81-88.
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  • Animalism and the Persistence of Human Organisms.John Dupré - 2014 - Southern Journal of Philosophy 52 (S1):6-23.
    Humans are a kind of animal, and it is a natural and sensible idea that the way to understand what it is for a human person to persist over time is to reflect on what it is for an animal to persist. This paper accepts this strategy. However, especially in the light of a range of recent biological findings, the persistence of animals turns out to be much more problematic than is generally supposed. The main philosophical premise of the paper (...)
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  • Michael Dummett, Frege: Philosophy of Language. [REVIEW]Hidé Ishiguro - 1974 - Philosophy 49 (190):438-442.
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  • Can events move?F. Dretske - 1967 - Mind 76 (304):479-492.
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  • Wesley Salmon’s Process Theory of Causality and the Conserved Quantity Theory.Phil Dowe - 1992 - Philosophy of Science 59 (2):195-216.
    This paper examines Wesley Salmon's "process" theory of causality, arguing in particular that there are four areas of inadequacy. These are that the theory is circular, that it is too vague at a crucial point, that statistical forks do not serve their intended purpose, and that Salmon has not adequately demonstrated that the theory avoids Hume's strictures about "hidden powers". A new theory is suggested, based on "conserved quantities", which fulfills Salmon's broad objectives, and which avoids the problems discussed.
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  • Physical Causation.D. Ehring - 2003 - Mind 112 (447):529-533.
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  • Phil Dowe, Physical Causation. [REVIEW]Phil Dowe - 2002 - Erkenntnis 56 (2):258-263.
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  • Autopoiesis, adaptivity, teleology, agency.Ezequiel A. Di Paolo - 2005 - Phenomenology and the Cognitive Sciences 4 (4):429-452.
    A proposal for the biological grounding of intrinsic teleology and sense-making through the theory of autopoiesis is critically evaluated. Autopoiesis provides a systemic language for speaking about intrinsic teleology but its original formulation needs to be elaborated further in order to explain sense-making. This is done by introducing adaptivity, a many-layered property that allows organisms to regulate themselves with respect to their conditions of viability. Adaptivity leads to more articulated concepts of behaviour, agency, sense-construction, health, and temporality than those given (...)
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  • Hylomorphism and the Metabolic Closure Conception of Life.James DiFrisco - 2014 - Acta Biotheoretica 62 (4):499-525.
    This paper examines three exemplary theories of living organization with respect to their common feature of defining life in terms of metabolic closure: autopoiesis, systems, and chemoton theory. Metabolic closure is broadly understood to denote the property of organized chemical systems that each component necessary for the maintenance of the system is produced from within the system itself, except for an input of energy. It is argued that two of the theories considered—autopoiesis and systems—participate in a hylomorphist pattern of thinking (...)
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  • Resurrecting biological essentialism.Michael Devitt - 2008 - Philosophy of Science 75 (3):344-382.
    The article defends the doctrine that Linnaean taxa, including species, have essences that are, at least partly, underlying intrinsic, mostly genetic, properties. The consensus among philosophers of biology is that such essentialism is deeply wrong, indeed incompatible with Darwinism. I argue that biological generalizations about the morphology, physiology, and behavior of species require structural explanations that must advert to these essential properties. The objection that, according to current “species concepts,” species are relational is rejected. These concepts are primarily concerned with (...)
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  • Two Philosophical Experiments: Interrogations of Authority and Concentration in the Present.John B. Cobb, David Ray Griffin & Charles Birch - 1977 - University Press of America.
    A collection of essays by prominent physicists, biologists, geneticists, zoologists, philosophers and other thinkers about the relationship between science and philosophy, particularly the teleological versus the mechanistic explanation of the universe.
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  • Discovering Cell Mechanisms: The Creation of Modern Cell Biology.William Bechtel - 2005 - Cambridge University Press.
    Between 1940 and 1970 pioneers in the new field of cell biology discovered the operative parts of cells and their contributions to cell life. They offered mechanistic accounts that explained cellular phenomena by identifying the relevant parts of cells, the biochemical operations they performed, and the way in which these parts and operations were organised to accomplish important functions. Cell biology was a revolutionary science but in this book it also provides fuel for yet another revolution, one that focuses on (...)
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  • Individuals Across The Sciences.Thomas Pradeu & Alexandre Guay (eds.) - 2016 - New York, État de New York, États-Unis: Oxford University Press.
    What are individuals? How can they be identified? These are crucial questions for philosophers and scientists alike. Criteria of individuality seem to differ markedly between metaphysics and the empirical sciences - and this might well explain why no work has hitherto attempted to relate the contributions of metaphysics, physics and biology on this question. This timely volume brings together various strands of research into 'individuality', examining how different sciences handle the issue, and reflecting on how this scientific work relates to (...)
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  • Causation and Laws of Nature.Max Kistler - 2006 - London: Routledge.
    This is the first English translation of _Causalite´ et Lois de La Nature,_ and is an important contribution to the theory of causation_._ Max Kistler reconstructs a unified concept of causation that is general enough to adequately deal with both elementary physical processes, and the macroscopic level of phenomena we encounter in everyday life. This book will be of great interest to philosophers of science and metaphysics, and also to students and scholars of philosophy of mind where concepts of causation (...)
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  • Wholeness and the Implicate Order.David Bohm - 1980 - New York: Routledge.
    David Bohm was one of the foremost scientific thinkers and philosophers of our time. Although deeply influenced by Einstein, he was also, more unusually for a scientist, inspired by mysticism. Indeed, in the 1970s and 1980s he made contact with both J. Krishnamurti and the Dalai Lama whose teachings helped shape his work. In both science and philosophy, Bohm's main concern was with understanding the nature of reality in general and of consciousness in particular. In this classic work he develops (...)
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  • Individuals: An Essay in Descriptive Metaphysics.Peter Frederick Strawson - 1959 - London, England: Routledge. Edited by Wenfang Wang.
    Since its publication in 1959, Individuals has become a modern philosophical classic. Bold in scope and ambition, it continues to influence debates in metaphysics, philosophy of logic and language, and epistemology. Peter Strawson's most famous work, it sets out to describe nothing less than the basic subject matter of our thought. It contains Strawson's now famous argument for descriptive metaphysics and his repudiation of revisionary metaphysics, in which reality is something beyond the world of appearances. Throughout, Individuals advances some highly (...)
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  • The Constituents of Life.John Dupré - 2007 - Uitgeverij van Gorcum.
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  • A Future for Presentism.Craig Bourne - 2006 - Oxford, GB: Oxford University Press UK.
    How can we talk meaningfully about the past if it does not exist to be talked about? What gives time its direction? Is time travel possible? This defence of presentism - the view that only the present exists - makes an original contribution to a fast growing and exciting debate.
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  • Possibility of Metaphysics: Substance, Identity, and Time.E. J. Lowe - 1998 - Oxford, GB: Oxford University Press UK.
    Jonathan Lowe argues that metaphysics should be restored to a central position in philosophy, as the most fundamental form of rational inquiry, whose findings underpin those of all other disciplines. He portrays metaphysics as charting the possibilities of existence, by idetifying the categories of being and the relations of ontological dependency between entities of different categories. He proceeds to set out a unified and original metaphysical system: he defends a substance ontology, according to which the existence of the world s (...)
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  • Auf dem Kampfplatz der Metaphysik. Kritische Studien zur transtemporalen Identität von Personen.Anne Sophie Meincke - 2015 - Münster: Mentis.
    In this monograph, I systematically analyse the debate in recent analytic metaphysics, with a special focus on recent biologically inspired (so-called animalist) theories of personal identity. I argue that the debate is stuck in a dilemma which is neither harmless nor new: the modern antagonism between the reductionist elimination of personal identity on the one hand and its non-reductionist mystification on the other rather repeats the antagonism between rationalist dogmatism and empirical scepticism in the 18th century’s debates on the soul. (...)
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  • Philosophy of Biology: A Contemporary Introduction.Alexander Rosenberg & Daniel W. McShea - 2007 - New York, NY: Routledge. Edited by Daniel W. McShea.
    Is life a purely physical process? What is human nature? Which of our traits is essential to us? In this volume, Daniel McShea and Alex Rosenberg – a biologist and a philosopher, respectively – join forces to create a new gateway to the philosophy of biology; making the major issues accessible and relevant to biologists and philosophers alike. Exploring concepts such as supervenience; the controversies about genocentrism and genetic determinism; and the debate about major transitions central to contemporary thinking about (...)
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  • Organisms, Agency, and Evolution.D. M. Walsh - 2015 - Cambridge University Press.
    The central insight of Darwin's Origin of Species is that evolution is an ecological phenomenon, arising from the activities of organisms in the 'struggle for life'. By contrast, the Modern Synthesis theory of evolution, which rose to prominence in the twentieth century, presents evolution as a fundamentally molecular phenomenon, occurring in populations of sub-organismal entities - genes. After nearly a century of success, the Modern Synthesis theory is now being challenged by empirical advances in the study of organismal development and (...)
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  • Anticipatory Behavior in Adaptive Learning Systems: Foundations, Theories, and Systems.Martin V. Butz, Olivier Sigaud & Pierre Gérard - 2003 - Springer Verlag.
    The interdisciplinary topic of anticipation, attracting attention from computer scientists, psychologists, philosophers, neuroscientists, and biologists is a rather new and often misunderstood matter of research. This book attempts to establish anticipation as a research topic and encourage further research and development work. First, the book presents philosophical thoughts and concepts to stimulate the reader's concern about the topic. Fundamental cognitive psychology experiments then confirm the existence of anticipatory behavior in animals and humans and outline a first framework of anticipatory learning (...)
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  • Person and Object: A Metaphysical Study.Roderick M. Chisholm - 1976 - London: Open Court.
    First published in 2002. Routledge is an imprint of Taylor & Francis, an informa company.
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  • Biology as Society, Society as Biology: Metaphors.Sabine Maasen, Everett Mendelsohn & Peter Weingart - 1995 - Springer.
    not lie in the conceptual distinctions but in the perceived functions of metaphors and whether in the concrete case they are judged positive or negative. The ongoing debates reflect these concerns quite clearly~ namely that metaphors are judged on the basis of supposed dangers they pose and opportunities they offer. These are the criteria of evaluation that are obviously dependent on the context in which the transfer of meaning occurs. Our fundamental concern is indeed the transfer itself~ its prospects and (...)
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  • Discovering Complexity: Decomposition and Localization as Strategies in Scientific Research.William Bechtel & Robert C. Richardson - 2010 - Princeton.
    An analysis of two heuristic strategies for the development of mechanistic models, illustrated with historical examples from the life sciences. In Discovering Complexity, William Bechtel and Robert Richardson examine two heuristics that guided the development of mechanistic models in the life sciences: decomposition and localization. Drawing on historical cases from disciplines including cell biology, cognitive neuroscience, and genetics, they identify a number of "choice points" that life scientists confront in developing mechanistic explanations and show how different choices result in divergent (...)
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  • Parts : a Study in Ontology.Peter Simons - 1987 - Revue de Métaphysique et de Morale 2:277-279.
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  • At Home in the Universe: The Search for Laws of Self-organization and Complexity.Stuart Kauffman & Stuart A. Kauffman - 1995 - Oxford University Press USA.
    At Home in the Universe presents and extends the intellectual core ofKauffman's earlier book The Origins of Order (OUP 1993) for any intelligentgeneral reader can understand and appreciate. The reader is very effectivelyinvited into Kauffman's vision and thought processes, in one of the moreexhilarating and important books of popular science.
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  • The Logic of Life: A History of Heredity.François Jacob - 1993 - Princeton University Press.
    This book discusses the history of biology and science. Focusing on heredity, which Jacobs considers the fundamental feature of living things, he shows how, since the sixteenth century, the scientific understanding of inherited traits has moved not in a linear, progressive way, from error to truth, but instead through a series of frameworks. He reveals how these successive interpretive approaches--focusing on visible structures, internal structures such as cells, evolution, genes, and DNA and other molecules- each have their own power but (...)
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  • Investigations.Stuart A. Kauffman - 2000 - Oxford University Press.
    A fascinating exploration of the very essence of life itself sheds new light on the order and evolution in complex life systems and defines and explains autonomous agents and work within the contexts of thermodynamics and information theory, setting the stage for a dramatic technological revolution. 50,000 first printing.
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  • Tools for Thought.Conrad Hal Waddington - 1977 - Jonathan Cape.
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  • Life Itself: A Comprehensive Inquiry Into the Nature, Origin, and Fabrication of Life.Robert Rosen - 2005 - Complexity in Ecological Systems.
    What is life? For four centuries, it has been believed that the only possible scientific approach to this question proceeds from the Cartesian metaphor -- organism as machine. Therefore, organisms are to be studied and characterized the same way "machines" are; the same way any inorganic system is. Robert Rosen argues that such a view is neither necessary nor sufficient to answer the question. He asserts that life is not a specialization of mechanism, but rather a sweeping generalization of it. (...)
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  • Science as a Process: An Evolutionary Account of the Social and Conceptual Development of Science.David L. Hull - 1988 - University of Chicago Press.
    "Legend is overdue for replacement, and an adequate replacement must attend to the process of science as carefully as Hull has done. I share his vision of a serious account of the social and intellectual dynamics of science that will avoid both the rosy blur of Legend and the facile charms of relativism.... Because of [Hull's] deep concern with the ways in which research is actually done, Science as a Process begins an important project in the study of science. It (...)
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  • The Organism.Kurt Goldstein - 1995 - Princeton University Press.
    Foreword by Oliver Sacks Kurt Goldstein (1878-1965) was already an established neuropsychologist when he emigrated from Germany to the United States in the 1930s. This book, his magnum opus and widely regarded as a modern classic in psychology and biology, grew out of his dissatisfaction with traditional natural science techniques for analyzing living beings. It offers a broad introduction to the sources and ranges of application of the "holistic" or "organismic" research program that has since become a standard part of (...)
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  • Embryology, Epigenesis and Evolution: Taking Development Seriously.Jason Scott Robert - 2004 - Cambridge University Press.
    Historically, philosophers of biology have tended to sidestep the problem of development by focusing primarily on evolutionary biology and, more recently, on molecular biology and genetics. Quite often too, development has been misunderstood as simply, or even primarily, a matter of gene activation and regulation. Nowadays a growing number of philosophers of science are focusing their analyses on the complexities of development, and in Embryology, Epigenesis and Evolution Jason Scott Robert explores the nature of development against current trends in biological (...)
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  • Principles of Biological Autonomy.Francisco J. Varela - 1979 - North-Holland.
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  • Process Theories: Crossdisciplinary Studies in Dynamic Categories.Johanna Seibt - 2003 - Springer Verlag.
    Processes constitute the world of human experience - from nature to cognition to social reality. Yet our philosophical and scientific theories of nature and experience have traditionally prioritized concepts for static objects and structures. The essays collected here call for a review of the role of dynamic categories in the language of theories. They present old and new descriptive tools for the modelling of dynamic domains, and argue for the merits of process-based explanations in ontology, cognitive science, semiotics, linguistics, philosophy (...)
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  • Making Truth: Metaphor in Science.Theodore L. Brown - 2003 - University of Illinois Press.
    How does science work? _Making Truth: Metaphor in Science_ argues that most laypeople, and many scientists, do not have a clear understanding of how metaphor relates to scientific thinking. With stunning clarity, and bridging the worlds of scientists and nonscientists, Theodore L. Brown demonstrates the presence and the power of metaphorical thought. He presents a series of studies of scientific systems, ranging from the atom to current topics in chemistry and biology such as protein folding, chaperone proteins, and global warming. (...)
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  • Process Philosophy: A Survey of Basic Issues.Nicholas Rescher - 2000 - University of Pittsburgh Press.
    _Process Philosophy_ surveys the basic issues and controversies surrounding the philosophical approach known as “process philosophy.” Process philosophy views temporality, activity, and change as the cardinal factors for our understanding of the real—process has priority over product, both ontologically and epistemically. Rescher examines the movement’s historical origins, reflecting a major line of thought in the work of such philosophers as Heracleitus, Leibniz, Bergson, Peirce, William James, and especially A. N. Whitehead. Reacting against the tendency to associate process philosophy too closely (...)
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  • Genetics and philosophy : an introduction.Paul Griffiths & Karola Stotz - 2013 - Cambridge: Cambridge University Press.
    In the past century, nearly all of the biological sciences have been directly affected by discoveries and developments in genetics, a fast-evolving subject with important theoretical dimensions. In this rich and accessible book, Paul Griffiths and Karola Stotz show how the concept of the gene has evolved and diversified across the many fields that make up modern biology. By examining the molecular biology of the 'environment', they situate genetics in the developmental biology of whole organisms, and reveal how the molecular (...)
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  • Structure and Being: A Theoretical Framework for a Systematic Philosophy.Lorenz B. Puntel - 2008 - Pennsylvania State University Press.
    "Presents, and in part develops, a systematic philosophy as the universal science, or the theorization of the unrestricted universe of discourse, explicitly including being as such and as a whole. Argues that complete exploration of the theoretical domain requires such a science"--Provided by publisher.
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  • Process Metaphysics: An Introduction to Process Philosophy.Nicholas Rescher - 1996 - State University of New York Press.
    Presents a synoptic, compact, and accessible exposition of this influential and interesting sector of twentieth-century American philosophy.
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