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  1. Broadening the problem agenda of biological individuality: individual differences, uniqueness and temporality.Rose Trappes & Marie I. Kaiser - 2021 - Biology and Philosophy 36 (2):1-28.
    Biological individuality is a notoriously thorny topic for biologists and philosophers of biology. In this paper we argue that biological individuality presents multiple, interconnected questions for biologists and philosophers that together form a problem agenda. Using a case study of an interdisciplinary research group in ecology, behavioral and evolutionary biology, we claim that a debate on biological individuality that seeks to account for diverse practices in the biological sciences should be broadened to include and give prominence to questions about uniqueness (...)
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  • Biological Individuals.Robert A. Wilson & Matthew J. Barker - 2024 - Stanford Encyclopedia of Philosophy.
    The impressive variation amongst biological individuals generates many complexities in addressing the simple-sounding question what is a biological individual? A distinction between evolutionary and physiological individuals is useful in thinking about biological individuals, as is attention to the kinds of groups, such as superorganisms and species, that have sometimes been thought of as biological individuals. More fully understanding the conceptual space that biological individuals occupy also involves considering a range of other concepts, such as life, reproduction, and agency. There has (...)
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  • The Problem of Biological Individuality.Ellen Clarke - 2010 - Biological Theory 5 (4):312-325.
    Darwin’s classic ‘Origin of Species’ (Darwin 1859) described forces of selection acting upon individuals, but there remains a great deal of controversy about what exactly the status and definition of a biological individual is. Recently some authors have argued that the individual is dispensable – that an inability to pin it down is not problematic because little rests on it anyway. The aim of this paper is to show that there is a real problem of biological individuality, and an urgent (...)
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  • Plant individuality: a solution to the demographer’s dilemma.Ellen Clarke - 2012 - Biology and Philosophy 27 (3):321-361.
    The problem of plant individuality is something which has vexed botanists throughout the ages, with fashion swinging back and forth from treating plants as communities of individuals (Darwin 1800 ; Braun and Stone 1853 ; Münch 1938 ) to treating them as organisms in their own right, and although the latter view has dominated mainstream thought most recently (Harper 1977 ; Cook 1985 ; Ariew and Lewontin 2004 ), a lively debate conducted mostly in Scandinavian journals proves that the issues (...)
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  • A levels-of-selection approach to evolutionary individuality.Ellen Clarke - 2016 - Biology and Philosophy 31 (6):893-911.
    What changes when an evolutionary transition in individuality takes place? Many different answers have been given, in respect of different cases of actual transition, but some have suggested a general answer: that a major transition is a change in the extent to which selection acts at one hierarchical level rather than another. The current paper evaluates some different ways to develop this general answer as a way to characterise the property ‘evolutionary individuality’; and offers a justification of the option taken (...)
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  • Individuality and Aggregativity.Stéphane Chauvier - 2017 - Philosophy, Theory, and Practice in Biology 9 (11).
    Why is there a specific problem with biological individuality? Because the living realm contains a wide range of exotic particular concrete entities that do not easily match our ordinary concept of an individual. Slime moulds, dandelions, siphonophores are among the Odd Entities that excite the ontological zeal of the philosophers of biology. Most of these philosophers, however, seem to believe that these Odd Cases oblige us to refine or revise our common concept of an individual. They think, explicitly or tacitly, (...)
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  • The “biological ego”. From garrod's “chemical individuality” to Burnet's “self”.G. Roberto Burgio - 1990 - Acta Biotheoretica 38 (2):143-159.
    Starting from the conceptual premises of Garrod, who as long ago as 1902 spoke of chemical individuality, and of Burnet (1949), who recognized as self one's own molecular antigenic structures (as opposed to the antigenic alien: the non- self), the discovery and understanding of HLA antigens and of their extraordinarily individual and differentiated polymorphisms have gained universal recognition. Transplant medicine has now dramatically stressed, within man's knowledge of himself, the characteristic of his biological uniqueness. Today man, having become aware of (...)
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  • The Dilemma of Case Studies Resolved: The Virtues of Using Case Studies in the History and Philosophy of Science.Richard M. Burian - 2001 - Perspectives on Science 9 (4):383-404.
    Philosophers of science turned to historical case studies in part in response to Thomas Kuhn's insistence that such studies can transform the philosophy of science. In this issue Joseph Pitt argues that the power of case studies to instruct us about scientific methodology and epistemology depends on prior philosophical commitments, without which case studies are not philosophically useful. Here I reply to Pitt, demonstrating that case studies, properly deployed, illustrate styles of scientific work and modes of argumentation that are not (...)
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  • The Ontogenesis of Human Identity.Giovanni Boniolo - 2005 - Royal Institute of Philosophy Supplement 56:5-6.
    “ >. Das hiess doch: Wenn du dir gewisse Tatsachen anders denkst,sie anders beschreibst, als sie sind, dann kannst du die Anwendung gewisser Begriffe dir nicht mehr vorstellen, weil die Regeln ihrer Anwendung kein Analogon unter den neuen Umständen haben.”.
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  • The Identity of Living Beings, Epigenetics, and the Modesty of Philosophy.Giovanni Boniolo & Giuseppe Testa - 2012 - Erkenntnis 76 (2):279-298.
    Two problems related to the biological identity of living beings are faced: the who-problem (which are the biological properties making that living being unique and different from the others?); the persistence-problem (what does it take for a living being to persist from a time to another?). They are discussed inside a molecular biology framework, which shows how epigenetics can be a good ground to provide plausible answers. That is, we propose an empirical solution to the who-problem and to the persistence-problem (...)
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  • Behavioural ecology’s ethological roots.Jean-Sébastien Bolduc - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (3):674-683.
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  • Behavioural ecology's ethological roots.Jean-Sébastien Bolduc - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (3):674-683.
    Since Krebs and Davies’s (1978) landmark publication, it is acknowledged that behavioural ecology owes much to the ethological tradition in the study of animal behaviour. Although this assumption seems to be right—many of the first behavioural ecologists were trained in departments where ethology developed and matured—it still to be properly assessed. In this paper, I undertake to identify the approaches used by ethologists that contributed to behavioural ecology’s constitution as a field of inquiry. It is my contention that the current (...)
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  • In search of behavioral individuality.David P. Barash - 1997 - Human Nature 8 (2):153-169.
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  • Feeling with the Organism: A Blueprint for an Empirical Philosophy of Science.Susann Wagenknecht & Erika Mansnerus - 2015 - In Hanne Andersen, Nancy J. Nersessian & Susann Wagenknecht (eds.), Empirical Philosophy of Science: Introducing Qualitative Methods into Philosophy of Science. Cham: Springer International Publishing.
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  • Qualitative tools and experimental philosophy.James Andow - 2016 - Philosophical Psychology 29 (8):1128-1141.
    Experimental philosophy brings empirical methods to philosophy. These methods are used to probe how people think about philosophically interesting things such as knowledge, morality, and freedom. This paper explores the contribution that qualitative methods have to make in this enterprise. I argue that qualitative methods have the potential to make a much greater contribution than they have so far. Along the way, I acknowledge a few types of resistance that proponents of qualitative methods in experimental philosophy might encounter, and provide (...)
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  • Causation in medicine.Brendan Clarke - 2011 - In Wenceslao J. González (ed.), Conceptual Revolutions: from Cognitive Science to Medicine. Oleiros (La Coruña): Netbiblo.
    In this paper, I offer one example of conceptual change. Specifically, I contend that the discovery that viruses could cause cancer represents an excellent example of branch jumping, one of Thagard’s nine forms of conceptual change. Prior to about 1960, cancer was generally regarded as a degenerative, chronic, non-infectious disease. Cancer causation was therefore usually held to be a gradual process of accumulating cellular damage, caused by relatively non-specific component causes, acting over long periods of time. Viral infections, on the (...)
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  • The Uniqueness of the Individual.P. B. Medawar - 1957 - Routledge.
    Originally published in 1957, The Uniqueness of the Individual is a collection of 9 essays published from the ten years preceding publication. The essays deal with some of the central problems of biology. These are among the questions put and answered from the standpoint of modern experimental biology. What is ageing and how is it measured? What theories have been held to account for it, and with what success? Did ageing evolve, and if so how? Is Lamarckism and adequate explanation (...)
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  • Darwinian individuals.Peter Godfrey-Smith - 2013 - In Frédéric Bouchard & Philippe Huneman (eds.), From Groups to Individuals: Evolution and Emerging Individuality. Cambridge, Massachusetts: MIT Press.
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  • Processes of Life: Essays in the Philosophy of Biology.John Dupré - 2011 - Oxford, GB: Oxford University Press.
    John Dupr explores recent revolutionary developments in biology and considers their relevance for our understanding of human nature and society. He reveals how the advance of genetic science is changing our view of the constituents of life, and shows how an understanding of microbiology will overturn standard assumptions about the living world.
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  • Rethinking Ethnography for Philosophy of Science.Nancy J. Nersessian & Miles MacLeod - 2022 - Philosophy of Science 89 (4):721-741.
    We lay groundwork for applying ethnographic methods in philosophy of science. We frame our analysis in terms of two tasks: to identify the benefits of an ethnographic approach in philosophy of science and to structure an ethnographic approach for philosophical investigation best adapted to provide information relevant to philosophical interests and epistemic values. To this end, we advocate for a purpose-guided form of cognitive ethnography that mediates between the explanatory and normative interests of philosophy of science, while maintaining openness and (...)
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  • Individual-level mechanisms in ecology and evolution.Marie I. Kaiser & Rose Trappes - 2023 - In William C. Bausman, Janella K. Baxter & Oliver M. Lean (eds.), From biological practice to scientific metaphysics. Minneapolis: University of Minnesota Press.
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  • Individuating Part-whole Relations in the Biological World.Marie I. Kaiser - 2018 - In O. Bueno, R. Chen & M. B. Fagan (eds.), Individuation across Experimental and Theoretical Sciences. Oxford University Press.
    What are the conditions under which one biological object is a part of another biological object? This paper answers this question by developing a general, systematic account of biological parthood. I specify two criteria for biological parthood. Substantial Spatial Inclusionrequires biological parts to be spatially located inside or in the region that the natural boundary of t he biological whole occupies. Compositional Relevance captures the fact that a biological part engages in a biological process that must make a necessary contribution (...)
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  • Is Aldo Leopold's 'Land Community' an Individual?Roberta L. Millstein - 2018 - In O. Bueno, R. Chen & M. B. Fagan (eds.), Individuation across Experimental and Theoretical Sciences. Oxford University Press. pp. 279-302.
    The “land community” (or “biotic community”) that features centrally in Aldo Leopold’s Land Ethic has typically been equated with the concept of “ecosystem.” Moreover, some have challenged this central Leopoldean concept given the multitude of meanings of the term “ecosystem” and the changes the term has undergone since Leopold’s time (see, e.g., Shrader-Frechette 1996). Even one of Leopold’s primary defenders, J. Baird Callicott, asserts that there are difficulties in identifying the boundaries of ecosystems and suggests that we recognize that their (...)
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  • Ask Not "What is an Individual?".C. Kenneth Waters - 2018 - In O. Bueno, R. Chen & M. B. Fagan (eds.), Individuation across Experimental and Theoretical Sciences. Oxford University Press.
    Philosophers of biology typically pose questions about individuation by asking “what is an individual?” For example, we ask, “what is an individual species”, “what is an individual organism”, and “what is an individual gene?” In the first part of this chapter, I present my account of the gene concept and how it is used in investigative practices in order to motivate a more pragmatic approach. Instead of asking “what is a gene?”, I ask: “how do biologists individuate genes?”, “for what (...)
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  • Biological Individuality – A Complex Pattern of Distributed Uniqueness.Alessandro Minelli - 2019 - In Antonino Pennisi & Alessandra Falzone (eds.), The Extended Theory of Cognitive Creativity: Interdisciplinary Approaches to Performativity. Springer Verlag. pp. 185-197.
    None of the concepts thus far advanced by biologists or philosophers of life covers in a satisfactory way all instances and aspects of biological individuality. Two main, only partially overlapping notions must be distinguished: physiological individuality, based on morphological or molecular attributes, and evolutionary individuality, based on the uniqueness of the role played by the individual in evolutionary processes. The three individuality criteria suggested by Pradeu, i.e. uniqueness, delineation and persistence, are useful as a rough guide, but their application faces (...)
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  • Prolegomena to an Empirical Philosophy of Science.Nancy Nersessian & Lisa Osbeck - 2015 - In Hanne Andersen, Nancy J. Nersessian & Susann Wagenknecht (eds.), Empirical Philosophy of Science: Introducing Qualitative Methods into Philosophy of Science. Cham: Springer International Publishing.
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  • Single Case Causes: What Is Evidence and Why.Nancy Cartwright - 2016 - In Hsiang-Ke Chao & Julian Reiss (eds.), Philosophy of Science in Practice: Nancy Cartwright and the nature of scientific reasoning. Cham: Springer International Publishing.
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  • Individuals: An Essay in Descriptive Metaphysics.Peter Strawson - 1959 - London, England: Routledge. Edited by Wenfang Wang.
    The classic, influential essay in 'descriptive metaphysics' by the distinguished English philosopher.
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  • Causation in biology: Stability, specificity, and the choice of levels of explanation.James Woodward - 2010 - Biology and Philosophy 25 (3):287-318.
    This paper attempts to elucidate three characteristics of causal relationships that are important in biological contexts. Stability has to do with whether a causal relationship continues to hold under changes in background conditions. Proportionality has to do with whether changes in the state of the cause “line up” in the right way with changes in the state of the effect and with whether the cause and effect are characterized in a way that contains irrelevant detail. Specificity is connected both to (...)
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  • Evidence for personalised medicine: mechanisms, correlation, and new kinds of black box.Mary Jean Walker, Justin Bourke & Katrina Hutchison - 2019 - Theoretical Medicine and Bioethics 40 (2):103-121.
    Personalised medicine has been discussed as a medical paradigm shift that will improve health while reducing inefficiency and waste. At the same time, it raises new practical, regulatory, and ethical challenges. In this paper, we examine PM strategies epistemologically in order to develop capacities to address these challenges, focusing on a recently proposed strategy for developing patient-specific models from induced pluripotent stem cells so as to make individualised treatment predictions. We compare this strategy to two main PM strategies—stratified medicine and (...)
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  • Hutchinson’s ecological niche for individuals.Elina Takola & Holger Schielzeth - 2022 - Biology and Philosophy 37 (4):1-21.
    We here develop a concept of an individualized niche in analogy to Hutchison’s population-level concept of the ecological niche. We consider the individualized niche as the range of environmental conditions under which a particular individual has an expected lifetime reproductive success of ≥ 1. Our concept has primarily an ecological function, as it refers to the match of an individual phenotype to its contemporary environment while we discuss evolutionary fitness as an evaluative parameter of this fit. We address four specific (...)
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  • Evolution, population thinking, and essentialism.Elliott Sober - 1980 - Philosophy of Science 47 (3):350-383.
    Ernst Mayr has argued that Darwinian theory discredited essentialist modes of thought and replaced them with what he has called "population thinking". In this paper, I characterize essentialism as embodying a certain conception of how variation in nature is to be explained, and show how this conception was undermined by evolutionary theory. The Darwinian doctrine of evolutionary gradualism makes it impossible to say exactly where one species ends and another begins; such line-drawing problems are often taken to be the decisive (...)
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  • The many faces of biological individuality.Thomas Pradeu - 2016 - Biology and Philosophy 31 (6):761-773.
    Biological individuality is a major topic of discussion in biology and philosophy of biology. Recently, several objections have been raised against traditional accounts of biological individuality, including the objections of monism, theory-centrism, ahistoricity, disciplinary isolationism, and the multiplication of conceptual uncertainties. In this introduction, I will examine the current philosophical landscape about biological individuality, and show how the contributions gathered in this special issue address these five objections. Overall, the aim of this issue is to offer a more diverse, unifying, (...)
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  • The Return of the Organism as a Fundamental Explanatory Concept in Biology.Daniel J. Nicholson - 2014 - Philosophy Compass 9 (5):347-359.
    Although it may seem like a truism to assert that biology is the science that studies organisms, during the second half of the twentieth century the organism category disappeared from biological theory. Over the past decade, however, biology has begun to witness the return of the organism as a fundamental explanatory concept. There are three major causes: (a) the realization that the Modern Synthesis does not provide a fully satisfactory understanding of evolution; (b) the growing awareness of the limits of (...)
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  • Personalized medicine and genome-based treatments: Why personalized medicine ≠ individualized treatments.S. G. Nicholls, B. J. Wilson, D. Castle, H. Etchegary & J. C. Carroll - 2014 - Clinical Ethics 9 (4):135-144.
    The sequencing of the human genome and decreasing costs of sequencing technology have led to the notion of ‘personalized medicine’. This has been taken by some authors to indicate that personalized medicine will provide individualized treatments solely based on one’s DNA sequence. We argue this is overly optimistic and misconstrues the notion of personalization. Such interpretations fail to account for economic, policy and structural constraints on the delivery of healthcare. Furthermore, notions of individualization based on genomic data potentially take us (...)
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  • Contingency and Individuality: A Plurality of Evolutionary Individuality Types.Alison K. McConwell - 2017 - Philosophy of Science 84 (5):1104-1116.
    Recently, philosophers have sought to determine the nature of individuals relevant to evolution by natural selection or evolutionary individuals. The Evolutionary Contingency Thesis is a claim about evolution that emphasizes the role of contingency or dependency relations and chance-based factors in how evolution unfolds. In this article, I argue that if we take evolutionary contingency seriously, then we should be pluralists about the types of individuals in selection.
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  • Investigating Interdisciplinary Practice: Methodological Challenges (Introduction).Miles MacLeod, Martina Merz, Uskali Mäki & Michiru Nagatsu - 2019 - Perspectives on Science 27 (4):545-552.
    Interdisciplinarity is one of the most prominent ideas driving science and research policy today.1 It is applied widely as a conception of what particularly creative and socially relevant research processes should consist of, whether in the natural sciences, the social sciences, the humanities, or elsewhere. Its advocates, many of whom are located in current science and research administration themselves, are using ideas of interdisciplinarity to reshape university organization and research funding. For the last 40 years, researchers studying interdisciplinarity have built (...)
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  • Rethinking individualization: The basic script and the three variants of institutionalized individualism.Rudi Laermans & Liza Cortois - 2018 - European Journal of Social Theory 21 (1):60-78.
    This article proposes a more culturalist and variegated conception of the individual than that presented by individualization theorists. Inspired by the approach of the individual advocated by Émile Durkheim, Talcott Parsons and John Meyers, it first outlines the general script of the individual-as-actor that informs modern individualism as well as the generic characteristics that are routinely attributed to persons such as agency and free will. It subsequently reconstructs three predominant interpretations of this general script, i.e. utilitarian, moral and expressive individualism. (...)
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  • Biological Individuality and Scientific Practice.Karen Kovaka - 2015 - Philosophy of Science 82 (5):1092-1103.
    I consider the relationship between scientific practice and the philosophical debate surrounding biological individuality. I argue for the sensitivity account, on which biologists do not require a resolution to the individuality debate. This view puts me in disagreement with much of the literature on biological individuality, where it has become common to claim that there is a relationship of dependence between biologists’ conceptions of individuality and the quality of their empirical work.
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  • What is an animal personality?Marie I. Kaiser & Caroline Müller - 2021 - Biology and Philosophy 36 (1):1-25.
    Individuals of many animal species are said to have a personality. It has been shown that some individuals are bolder than other individuals of the same species, or more sociable or more aggressive. In this paper, we analyse what it means to say that an animal has a personality. We clarify what an animal personality is, that is, its ontology, and how different personality concepts relate to each other, and we examine how personality traits are identified in biological practice. Our (...)
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  • Individuality as a Theoretical Scheme. II. About the Weak Individuality of Organisms and Ecosystems.Philippe Huneman - 2014 - Biological Theory 9 (4):374-381.
    Following a previous elaboration of the concept of weak individuality and some examples of its instances in ecology and biology, the article focuses on general features of the concept, arguing that in any ontological field individuals are understood on the basis of our knowledge of interactions, through the application of these general formulas for extracting individuals from interactions. Then, the specificities of the individuality in the sense of this weak concept are examined in ecology; I conclude by addressing the differences (...)
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  • Individuality as a Theoretical Scheme. I. Formal and Material Concepts of Individuality.Philippe Huneman - 2014 - Biological Theory 9 (4):361-373.
    Biological individuals are usually defined by evolutionists through a reference to natural selection. This article looks for a concept of individuality that would hold at the same time for organisms and for communities or ecosystems, the latter being unaffected by natural selection. In the wake of Simon’s notion of “quasi-independence,” I elaborate a concept of “weak individuality” defined by probabilistic connections between sub-entities, read off our knowledge of their interactions. This formal scheme of connections allows one to infer what are (...)
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  • A matter of individuality.David L. Hull - 1978 - Philosophy of Science 45 (3):335-360.
    Biological species have been treated traditionally as spatiotemporally unrestricted classes. If they are to perform the function which they do in the evolutionary process, they must be spatiotemporally localized individuals, historical entities. Reinterpreting biological species as historical entities solves several important anomalies in biology, in philosophy of biology, and within philosophy itself. It also has important implications for any attempt to present an "evolutionary" analysis of science and for sciences such as anthropology which are devoted to the study of single (...)
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  • Organized Self-Realization: Some Paradoxes of Individualization.Axel Honneth - 2004 - European Journal of Social Theory 7 (4):463-478.
    Despite the fact that the sociological notion ‘individualization’ contains the most heterogeneous phenomena, the article develops an interpretation of the fate of individualization in Western capitalism today. After having differentiated three different meanings of that notion with the help of Georg Simmel, the position is defended that the claims to individual self-realization, which have rapidly multiplied in the Western societies of thirty or forty years ago, have become so much a feature of the institutionalized expectations inherent in social reproduction that (...)
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  • Ontologies of Living Beings: Introduction.Adam Ferner & Thomas Pradeu - 2017 - Philosophy, Theory, and Practice in Biology 9 (4).
    Part of a special issue, Ontologies of Living Beings, guest-edited by A. M. Ferner and Thomas Pradeu.
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  • Concepts as Tools in the Experimental Generation of Knowledge in Cognitive Neuropsychology.Uljana Feest - 2010 - Spontaneous Generations 4 (1):173-190.
    This paper asks (a) how new scientific objects of research are onceptualized at a point in time when little is known about them, and (b) how those conceptualizations, in turn, figure in the process of investigating the phenomena in question. Contrasting my approach with existing notions of concepts and situating it in relation to existing discussions about the epistemology of experimentation, I propose to think of concepts as research tools. I elaborate on the conception of a tool that informs my (...)
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  • A Tale of Two Individuality Accounts and Integrative Pluralism.Sinan Şencan - 2019 - Philosophy of Science 86 (5):1111-1122.
    This article focuses on recent discussions about holobionts and evolutionary individuality to evaluate the merits of integrative pluralism. I argue that integrative pluralism is the wrong approach to take when it comes to holobiont research because integrative pluralism is not liberal enough to accommodate both single-species and multispecies individuals. I conclude by suggesting two points. First, a pluralistic view helps us better understand holobiont research. Second, the case of holobionts helps us develop a better account of scientific pluralism.
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  • Generality and Causal Interdependence in Ecology.Alkistis Elliott-Graves - 2018 - Philosophy of Science 85 (5):1102-1114.
    A hallmark of ecological research is dealing with complexity in the systems under investigation. One strategy is to diminish this complexity by constructing models and theories that are general. Alternatively, ecologists can constrain the scope of their generalizations to particular phenomena or types of systems. However, research employing the second strategy is often met with scathing criticism. I offer a theoretical argument in support of moderate generalizations in ecological research, based on the notions of interdependence and causal heterogeneity and their (...)
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  • The Disorder of Things: Metaphysical Foundations of the Disunity of Science.John Dupré - 1993 - Harvard University Press.
    With this manifesto, John Dupré systematically attacks the ideal of scientific unity by showing how its underlying assumptions are at odds with the central conclusions of science itself.
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  • The Limits of the Self: Immunology and Biological Identity.Thomas Pradeu - 2012 - , US: Oxford University Press.
    The Limits of the Self, will be essential reading for anyone interested in the definition of biological individuality and the understanding of the immune system.
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