Interoperability across data sets is a key challenge for quantitative histopathological imaging. There is a need for an ontology that can support effective merging of pathological image data with associated clinical and demographic data. To foster organized, cross-disciplinary, information-driven collaborations in the pathological imaging field, we propose to develop an ontology to represent imaging data and methods used in pathological imaging and analysis, and call it Quantitative Histopathological Imaging Ontology – QHIO. We apply QHIO to breast cancer hot-spot detection with (...) the goal of enhancing reliability of detection by promoting the sharing of data between image analysts. (shrink)

In Nicomachean Ethics VII, Aristotle offers an account of akrasia that purports to salvage the kernel of truth in the Socratic paradox that people act against what is best only through ignorance. Despite Aristotle’s apparent confidence in having identified the sense in which Socrates was right about akrasia, we are left puzzling over Aristotle’s own account, and the extent to which he agrees with Socrates. The most fundamental interpretive question concerns the sense in which Aristotle takes the akratic to be (...) ignorant. The received view in the literature has been the intellectualist interpretation, which takes akratic agents to be so ignorant of the wrongness of what they do as to be unaware of it. In recent decades, many scholars have identified serious problems in this interpretation and have moved towards the non-intellectualist reading, the strong version of which takes clearheaded akrasia to be possible. There is, however, a glaring shortage of discussion of the difficulties facing the strong... (shrink)

Ontology is one strategy for promoting interoperability of heterogeneous data through consistent tagging. An ontology is a controlled structured vocabulary consisting of general terms (such as “cell” or “image” or “tissue” or “microscope”) that form the basis for such tagging. These terms are designed to represent the types of entities in the domain of reality that the ontology has been devised to capture; the terms are provided with logical defi nitions thereby also supporting reasoning over the tagged data. Aim: This (...) paper provides a survey of the biomedical imaging ontologies that have been developed thus far. It outlines the challenges, particularly faced by ontologies in the fields of histopathological imaging and image analysis, and suggests a strategy for addressing these challenges in the example domain of quantitative histopathology imaging. The ultimate goal is to support the multiscale understanding of disease that comes from using interoperable ontologies to integrate imaging data with clinical and genomics data. (shrink)

Introduction: Metabolic syndrome (MetS) is an endocrinopathy with a combination of cardiovascular and metabolic compounds. In our study, it is expected to obtain results showing that mortality rate, loss of workforce, and treatment costs due to disorders caused by MetS can be reduced by physical exercise. The study analyses the effect of moderate exercise training on this Apolipoprotein E (ApoE), Apolipoprotein CIII (ApoCIII), adiponectin, resistin, interleukin-6 (IL-6), and tumor necrosis factor-alpha (TNF-α) which are thought to have a role in the (...) deterioration of glucose and lipid metabolism in MetS. -/- Methods: This clinical experimental study consists of 3 groups. The MetS+E (n=24) group, which included the participants who agreed to participate in the exercise program in addition to their medical treatment, the MetS (n=23) group who received medical treatment but did not exercise, and the Control+E (n=25) group, which included healthy volunteers who had the same protocol as MetS+E ApoE, ApoCIII, adiponectin, resistin, IL-6, and TNF-α plasma levels of all participants were measured both at the beginning of the study and at the end of the protocol. -/- Results: At the end of the study we reached the following findings; insulin and Homeostatic Model Assessment for Insulin Resistance (HOMA-IR) levels decreased in exercise groups (p=0,03). ApoCIII levels increased in all the groups after the study (p<0,01). IL-6 levels decreased in MetS+E (p<0,01) and Control+E (p=0,037). ApoE (p=0,01) and TNF-α (p=0,037) levels decreased only in the Control+E group. -/- Conclusion: Training showed metabolic, anti-inflammatory, and physical improvements independent of ApoE and ApoCIII in those with MetS. (shrink)

Dâwûd al-Qarisî (Dâvûd al-Karsî) was a versatile and prolific 18th century Ottoman scholar who studied in İstanbul and Egypt and then taught for long years in various centers of learning like Egypt, Cyprus, Karaman, and İstanbul. He held high esteem for Mehmed Efendi of Birgi (Imâm Birgivî/Birgili, d.1573), out of respect for whom, towards the end of his life, Karsî, like Birgivî, occupied himself with teaching in the town of Birgi, where he died in 1756 and was buried next to (...) Birgivî. Better known for his following works on Arabic language and rhetoric and on the prophetic traditions (hadith): Sharḥu uṣûli’l-ḥadîth li’l-Birgivî; Sharḥu’l-Ḳaṣîdati’n-nûniyya (two commentaries, in Arabic and Turkish); Şarḥu’l-Emsileti’l-mukhtalifa fi’ṣ-ṣarf (two commentaries, in Arabic and Turkish); Sharḥu’l-Binâʾ; Sharḥu’l-ʿAvâmil; and Sharḥu İzhâri’l-asrâr, Karsî has actually composed textbooks in quite different fields. Hence the hundreds of manuscript copies of his works in world libraries. Many of his works were also recurrently printed in the Ottoman period. One of the neglected aspects of Karsî is his identity as a logician. Although he authored ambitious and potent works in the field of logic, this aspect of him has not been subject to modern studies. Even his bibliography has not been established so far (with scattered manuscript copies of his works and incomplete catalogue entries). This article primarily and in a long research based on manuscript copies and bibliographic sources, identifies twelve works on logic that Karsî has authored. We have clarified the works that are frequently mistaken for each other, and, especially, have definitively established his authorship of a voluminous commentary on al-Kâtibî’s al-Shamsiyya, of which commentary a second manuscript copy has been identified and described together with the other copy. Next is handled his most famous work of logic, the Sharhu Îsâghûcî, which constitutes an important and assertive ring in the tradition of commentaries on Îsâghûcî. We describe in detail the nine manuscript copies of this work that have been identified in various libraries. The critical text of Karsî’s Sharhu Îsâghûcî, whose composition was finished on 5 March 1745, has been prepared based on the following four manuscripts: (1) MS Kayseri Raşid Efendi Kütüphanesi, No. 857, ff.1v-3v, dated 1746, that is, only one year after the composition of the work; (2) MS Bursa İnebey Yazma Eser Kütüphanesi, Genel, No.794B, ff.96v-114v, dated 1755; (3) MS Millet Kütüphanesi, Ali Emiri Efendi Arapça, No. 1752, ff.48v-58r, dated 1760; (4) MS Beyazıt Yazma Eser Kütüphanesi, Beyazıt, No. 3129, ff.41v-55v, dated 8 March 1772. While preparing the critical text, we have applied the Center for Islamic Studies (İslam Araştırmaları Merkezi, İSAM)’s method of optional text choice. The critical text is preceded by a content analysis. Karsî is well aware of the preceding tradition of commentary on Îsâghûcî, and has composed his own commentary as a ‘simile’ or alternative to the commentary by Mollâ Fanârî which was famous and current in his own day. Karsî’s statement “the commentary in one day and one night” is a reference to Mollâ Fanârî who had stated that he started writing his commentary in the morning and finished it by the evening. Karsî, who spent long years in the Egyptian scholarly and cultural basin, adopted the religious-sciences-centered ‘instrumentalist’ understanding of logic that was dominant in the Egypt-Maghrib region. Therefore, no matter how famous they were, he criticized those theoretical, long, and detailed works of logic which mingled with philosophy; and defended and favored authoring functional and cogent logic texts that were beneficial, in terms of religious sciences, to the seekers of knowledge and the scholars. Therefore, in a manner not frequently encountered in other texts of its kind, he refers to the writings and views of Muhammad b. Yûsuf al-Sanûsî (d.1490), the great representative of this logical school in the Egyptian-Maghrib region. Where there is divergence between the views of the ‘earlier scholars’ (mutaqaddimûn) like Ibn Sînâ and his followers and the ‘later scholars’ (muta’akhkhirûn), i.e., post-Fakhr al-dîn al-Râzî logicians, Karsî is careful to distance himself from partisanship, preferring sometimes the views of the earliers, other times those of the laters. For instance, on the eight conditions proposed for the realization of contradiction, he finds truth to be with al-Fârâbî, who proposed “unity in the predicative attribution” as the single condition for the realization of contradiction. Similarly, on the subject matter of Logic, he tried to reconcile the mutaqaddimûn’s notion of ‘second intelligibles’ with the muta’akhkhirûn’s notion of ‘apprehensional and declarational knowledge,’ suggesting that not much difference exists between the two, on the grounds that both notions are limited to the aspect of ‘known things that lead to the knowledge of unknown things.’ Karsî asserts that established and commonly used metaphors have, according to the verifying scholars, signification by correspondence (dalâlat al-mutâbaqah), adding also that it should not be ignored that such metaphors may change from society to society and from time to time. Karsî also endorses the earlier scholars’ position concerning the impossibility of quiddity (mâhiyya) being composed of two co-extensive parts, and emphasizes that credit should not be given to later scholars’ position who see it possible. According to the verifying scholars (muhaqqîqûn), it is possible to make definition (hadd) by mentioning only difference (fasl), in which case it becomes an imperfect definition (hadd nâqis). He is of the opinion that the definition of the proposition (qadiyya) in al-Taftâzânî’s Tahdhîb is clearer and more complete: “a proposition is an expression that bears the possibility of being true or false”. He states that in the division of proposition according to quantity what is taken into consideration is the subject (mawdû‘) in categorical propositions, and the temporal aspect of the antecedent (muqaddam) in hypothetical propositions. As for the unquantified, indefinite proposition (qadiyya muhmalah), Karsî assumes that if it is not about the problems of the sciences, then it is virtually/potentially a particular proposition (qadiyya juz’iyyah); but if it is about the problems of the sciences, then it is virtually/potentially a universal proposition (qadiyya kulliyyah). This being the general rule about the ambiguous (muhmal) propositions, he nevertheless contends that, because its subject (mawdû‘) is negated, it is preferable to consider a negative ambiguous (sâliba muhmalah) proposition like “human (insân) is not standing” to be a virtually/potentially universal negative (sâliba kulliyyâh) proposition. He states that a disjunctive hypothetical proposition (shartiyya al-munfasila) that is composed of more than two parts/units is only seemingly so, and that in reality it cannot be composed of more than two units. Syllogism (qiyâs), according to Karsî, is the ultimate purpose (al-maqsad al-aqsâ) and the most valuable subject-matter of the science of Logic. For him, the entire range of topics that are handled before this one are only prolegomena to it. This approach of Karsî clearly reveals how much the ‘demonstration (burhân)-centered’ approach of the founding figures of the Muslim tradition of logic like al-Fârâbî and Ibn Sînâ has changed. al-Abharî, in his Îsâghûjî makes no mention of ‘conversion by contradiction’ (‘aks al-naqîd). Therefore, Karsî, too, in his commentary, does not touch upon the issue. However, in his Îsâghûjî al-jadîd Karsî does handle the conversion by contradiction and its rules. Following the method of Îsâghûjî, in his commentary Karsî shortly touches on the four figures (shakl) of conjuctive syllogism (qiyâs iqtirânî) and their conditions, after which he passes to the first figure (shakl), which is considered ‘the balance of the sciences’ (mi‘yâr al-‘ulûm), explaining the four moods (darb) of it. In his Îsâghûjî al-jadîd, however, Karsî handles all the four figures (shakl) with all their related moods (darb), where he speaks of fife moods (darb) of the fourth figure (shakl). The topic of ‘modal propositions’ (al-muwajjahât) and of ‘modal syllogism’ (al-mukhtalitât), both of which do not take place in the Îsâghûjî, are not mentioned by Karsî as well, either in his commentary on Îsâghûjî or in his Îsâghûjî al-jadîd. Karsî proposes that the certainties (yaqîniyyât), of which demonstration (burhân) is made, have seven, not six, divisions. After mentioning (1) axioms/first principles (awwaliyyât), (2) observata/sensuals (mushâhadât), (3) experta/empiricals (mujarrabât), (4) acumenalia (hadthiyyât), (5) testata (mutawâtirât), and (6) instictives (fitriyyât), that is, all the ‘propositions accompanied by their demonstrations,’ Karsî states that these six divisions, which do not need research and reflection (nazar), are called badîhiyyât (self-evidents), and constitute the foundations (usûl) of certainties (yaqîniyyât). As the seventh division he mentions (7) the nazariyyât (theoreticals), which are known via the badîhiyyât, end up in them, and therefore convey certainty (yaqîn). For Karsî, the nazariyyât/theoreticals, which constitute the seventh division of yaqîniyyât/certainties, are too numerous, and constitute the branches (far‘) of yaqîniyyât. Every time the concept of ‘Mughâlata’ (sophistry) comes forth in the traditional sections on the five arts usually appended to logic works, Karsî often gives examples from what he sees as extreme sûfî sayings, lamenting that these expressions are so widespread and held in esteem. He sometimes criticizes these expressions. However, it is observed that he does not reject tasawwuf in toto, but excludes from his criticism the mystical views and approaches of the truth-abiding (ahl al-haqq), shârî‘â-observant (mutasharri‘) leading sufis who have reached to the highest level of karâmah. (shrink)

Bu çalışmada Metin Erksan’ın 1965 yapımı Sevmek Zamanı filminin “bir resme âşık olma” hikâyesi gibi görünen anlatısının aslında dönemin varoluşçu felsefesinin Türkiye’deki özgün bir yansıması olduğu ve bunun da filmdeki kadın karakter ile kurulduğu gösterilecektir. Yazıda filmde beliren temsil, korku, özgürlük ve iletişim temaları öncelikle Platon’un mağara alegorisi ve Heidegger’in varoluşçu felsefesinin Dasein (orada-varlık) kavramına başvurularak ele alınacaktır. Filmde âşık olduğunu söylemekten çekinen Halil’in Meral’in temsiline kaçışı resmin bakışındaki iyilik ve sevgi ile açıklanır. Doğada insanların uzağında yaşayan ve çalışan (...) Halil arkadaşı Mustafa’nın kötülük uyarısı ile Meral’den kaçmaktan vazgeçip onunla konuşmaya karar verir. Halil’in kaçışındaki korkunun kaynağı Halil’in varoluşunun Meral tarafından tanınıp onaylanmaması ihtimali olsa da Meral’in Halil’in varoluşuna özgürce ve ihtimamla yaklaşarak Halil’in korkusunu daha derin bir varoluşsal kaygı ve özgürlükle karşı karşıya getirir. Yazı Meral’in Halil ile aynı moda girebilip onu anlayabilmesi ve bu güce sahip olmasının ikisi arasında iletişimi mümkün kıldığını iddia etmektedir. Yazıda en son filmin toplumsal gerçekçi yanında kadın sorununun nasıl şekillendiği ortaya konulacaktır. Meral Halil’i tanısa, kendisi Halil tarafından tanınsa bile kendi sınıfından gelen bir tanıma reddi ile karşılaşmaktadır. Bu tanımamanın ölüm kadar sert bir şiddete ulaşmasının nedeni ise ekonomik sınıfı değil cinsiyetidir. (shrink)

David Hume’un Doğal Din Üzerine Diyaloglar kitabı, başlığının da ima ettiği gibi, vahiy metinlerine başvurmadan Tanrı’nın varlığına ve niteliklerine ulaşılıp ulaşılamayacağını araştıran bir metindir. Metin boyunca, felsefe tarihinde de gördüğümüz, iki ana yaklaşımı temsil eden iki temel argüman sunulur. Bunlardan ilki, a priori yaklaşımı temsil eden kozmolojik argümandır. Diğeri ise, a posteriori yaklaşımı temsi eden zeki tasarım argümanıdır. Bu yazıda, Hume’un, diyalogdaki Philo karakteri üzerinden ortaya koyduğu, kozmolojik argümana yönelik eleştirileri ele alınıp, böyle bir argümanın neden Tanrı’nın varlığı ve (...) nitelikleri konusunda bizi bir sonuca ulaştırmayacağı ortaya konmuştur. (shrink)

“Gecenin bir yarısı kalktığınızı düşünün; bedeniniz yatağın ayakları arasında tam olarak ne kadar aralık olduğunu ve ne yapması gerektiğini bilir. Bir bakıma, etrafınızdaki mekân sizinle konuşur ve incelikle kurulmuş ritim oyunları arasına yerleştirir sizi. Mekânı hareket, ses ve doku ritimleriyle özümsediğimiz —etrafımızdakilerle yankılandığımız— her gün dolu dolu yaşanan bir olaydır bu. Mekân ve zaman bedende birleşir. Bu derin beden bilinci tam da yerleşmenin tanımıdır. Bachelard mimarinin Öklidci geometriye dayanarak anlaşılmasından kurtarıp mekânın yaratıcı poetikasına ulaştırdı bizi.” -/- Gaston Bachelard’ın hayranlık uyandıran (...) mekân çalışmalarını farklı disiplinlerle birlikte kat etmeyi amaçlayan bu kitap, okurunu hem Bachelard’la hem de onun felsefi, edebi, mimari, tasarım yorumlarıyla buluşturuyor. Farklı disiplinlerin “mekân” fikrinden hareketle aslında sadece mimari için değil ilgili her disiplin için sorulması gereken soruyu gündeme getiriyor: “Mimarlar neden Bachelard okur?” Elinizdeki derleme barındırdığı metin ve görsel çeşitliliğiyle mekânların ritmini bulmaya çalışıyor. Mimari, felsefe ve edebiyat meraklısı okurların keyifle peşine düşeceği bir serüven sunduğumuzu düşünüyoruz. (shrink)

Sinema, genel olarak tüm sanat dalları, aynı anda hem bir sanat dalı ve politik-ekonomik bir kurumdur. Bir yanda elimizde hareketli imgeleri ışıkla selüloidden geçirerek ekrana yansıtan mecra film vardır. Tek tek filmler ise biçim ve içeriklerine göre birbirlerinden ayrılan ve analiz edilen münferit estetik objelerdir. Öte yanda ise film endüstrisi yer alır - filmleri planlayan, üreten, pazarlayan ve kitlelere izleten sanatsal, teknik ve ekonomik araçların oluşturduğu komplike ağ. Doğumundan bu yana sinemanın estetik ve politik açıları farklı formlarda birçok teorik analize (...) maruz kalmış, karşılığında bu analizler de çeşitli eleştirilerle irdelenmiştir. Bu metin bu analizlerin ve onlara yöneltilen eleştirilerin kısa bir incelemesini ve ardından film teorisine farklı bir yaklaşımın ana hatlarını sunacağım. Foucault ve Deleuze'ün fikirlerinden yola çıkan bu "anarşist" film teorisi, geçerli bir eleştirel metodoloji oluşturmanın yanısıra filmin özgürleştirici potansiyeline ışık tutmayı amaçlamaktadır. (shrink)

8-9 Kasım 2012’de, Hacettepe Üniversitesi İngilizce İktisat Bölümü tarafından düzenlenen “Marx, Marksizmler ve Özgürlük” konferansı uzun zamandır üzerinde çalıştığım konular ile ilgili görüşlerimi sunma fırsatı verdi. Praksis dergisini ilk yayınladığım 1996 yılında aşağıda sunduğum düşüncelerimin temellerini atmıştım aslında. Ancak hala teoride ki sorunu bir bütün olarak, Marx ve Engels’te değil Marksizmin kavranılışında olduğunda ısrarcıydım. Çalışmalarım, Marx’ın tarih, diyalektik yöntem, sınıf savaşımı, kapitalizm eleştirisi ve bilim anlayışı gibi pek çok temel konuda tamamen farklı teorik perspektif ve anlayış geliştirmemle sonuçlandı. Bu görüşlerimi (...) kamuoyu ile ilk paylaştığım zemin yukarıda adı geçen bilimsel konferans oldu. Kendi teorik geçmişimle de bir hesaplaşma olan bu metin kuşkusuz okuru tatmin etmekten uzaktır. Çünkü yeni bir bilim teorisi için bir başlangıç metnidir; 19. yüz yıl sosyal teorileri üzerinde yükselen geleneksel ideolojik ön yargılardan kurtulmuş aklın, çağdaş bilimsel verilere yaslanarak yeni maceralara cesaretle atılmayı özendirecek olan bir başlangıç metni. (shrink)

It is possible to talk about dominant concepts in modern political definitions. Among these concepts; power, violence, hierarchy, security and resource allocation are the prominent ones. For many, politics is how power and authority is distributed and used. When politics is defined in relation to pure power, violence appears to be one of the effective means of politics. Even, with a further extent, violence is seen as an expression of power. As said by C. W. Mills’ “politics is a struggle (...) for power, the ultimate kind of power is violence” or the way Mao Zedong puts it “politics is war without bloodshed, while war is politics with bloodshed” are the most typical examples of violence and politics together. It is inevitable for politics, which is defined as art of ruling, obtaining power and maximizing power, to see violence as legitimate. User of this formulation most commonly tend to distinguish between legitimate and illegitimate violence. Making this distinction confirms the legitimization of violence as a political action. There are also criticisms of the dominant approach that defines politics through power and violence. These criticisms, by asking whether it is possible to provide a different definition, try to emerge an alternative understanding of politics. Hannah Arendt is one of the prominent thinkers of this current. Through distinguishing the fake and authentic politics, she places action at the center of authentic politics. Action is the ability to initiate and interrupt processes that enables people to realize themselves, make them authentic and live with other humans. In this respect, politics is the act of living together, discussing public issues and taking action for the common world. Acting in the public sphere before their peers causes the person to show uniqueness. In this respect, equality and plurality are the condition of politics. Arendt places not only action, but also “speech” at the center of politics. For Arendt, political life is based on action. The association of politics with the speech clearly excludes violence. According to Arendt, violence is mute and never has the ability to initiate and be creative of the process caused by action, which is the center of politics. The aim of this paper is to rethink politics through Arendt’s views and discussing the possibility of a new definition for politics. (shrink)