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David Suarez [15]Javier Suárez [15]Mauricio Suárez [4]Antoine Suarez [2]
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  1. Rethinking hereditary relations: the reconstitutor as the evolutionary unit of heredity.Sophie J. Veigl, Javier Suárez & Adrian Stencel - 2022 - Synthese 200 (5):1-42.
    This paper introduces the reconstitutor as a comprehensive unit of heredity within the context of evolutionary research. A reconstitutor is the structure resulting from a set of relationships between different elements or processes that are actively involved in the recreation of a specific phenotypic variant in each generation regardless of the biomolecular basis of the elements or whether they stand in a continuous line of ancestry. Firstly, we justify the necessity of introducing the reconstitutor by showing the limitations of other (...)
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  2. (1 other version)The tool box of science: Tools for the building of models with a superconductivity example.Nancy Cartwright, Towfic Shomar & Mauricio Suárez - 1995 - Poznan Studies in the Philosophy of the Sciences and the Humanities 44:137-149.
    We call for a new philosophical conception of models in physics. Some standard conceptions take models to be useful approximations to theorems, that are the chief means to test theories. Hence the heuristics of model building is dictated by the requirements and practice of theory-testing. In this paper we argue that a theory-driven view of models can not account for common procedures used by scientists to model phenomena. We illustrate this thesis with a case study: the construction of one of (...)
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  3. The stability of traits conception of the hologenome: An evolutionary account of holobiont individuality.Javier Suárez - 2020 - History and Philosophy of the Life Sciences 42 (1):1-27.
    Bourrat and Griffiths :33, 2018) have recently argued that most of the evidence presented by holobiont defenders to support the thesis that holobionts are evolutionary individuals is not to the point and is not even adequate to discriminate multispecies evolutionary individuals from other multispecies assemblages that would not be considered evolutionary individuals by most holobiont defenders. They further argue that an adequate criterion to distinguish the two categories is fitness alignment, presenting the notion of fitness boundedness as a criterion that (...)
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  4. What is a hologenomic adaptation? Emergent individuality and inter-identity in multispecies systems.Javier Suárez & Vanessa Triviño - 2020 - Frontiers in Psychology 187 (11).
    Contemporary biological research has suggested that some host–microbiome multispecies systems (referred to as “holobionts”) can in certain circumstances evolve as unique biological individual, thus being a unit of selection in evolution. If this is so, then it is arguably the case that some biological adaptations have evolved at the level of the multispecies system, what we call hologenomic adaptations. However, no research has yet been devoted to investigating their nature, or how these adaptations can be distinguished from adaptations at the (...)
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  5. A metaphysical approach to holobiont individuality: Holobionts as emergent individuals.Javier Suárez & Vanessa Triviño - 2019 - Quaderns de Filosofia 6 (1):59-76.
    Holobionts are symbiotic assemblages composed by a host plus its microbiome. The status of holobionts as individuals has recently been a subject of continuous controversy, which has given rise to two main positions: on the one hand, holobiont advocates argue that holobionts are biological individuals; on the other, holobiont detractors argue that they are just mere chimeras or ecological communities, but not individuals. Both parties in the dispute develop their arguments from the framework of the philosophy of biology, in terms (...)
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  6. The importance of symbiosis in philosophy of biology: an analysis of the current debate on biological individuality and its historical roots.Javier Suárez - 2018 - Symbiosis 76 (2):77-96.
    Symbiosis plays a fundamental role in contemporary biology, as well as in recent thinking in philosophy of biology. The discovery of the importance and universality of symbiotic associations has brought new light to old debates in the field, including issues about the concept of biological individuality. An important aspect of these debates has been the formulation of the hologenome concept of evolution, the notion that holobionts are units of natural selection in evolution. This review examines the philosophical assumptions that underlie (...)
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  7. Explaining the behaviour of random ecological networks: the stability of the microbiome as a case of integrative pluralism.Roger Deulofeu, Javier Suárez & Alberto Pérez-Cervera - 2019 - Synthese 198 (3):2003-2025.
    Explaining the behaviour of ecosystems is one of the key challenges for the biological sciences. Since 2000, new-mechanicism has been the main model to account for the nature of scientific explanation in biology. The universality of the new-mechanist view in biology has been however put into question due to the existence of explanations that account for some biological phenomena in terms of their mathematical properties (mathematical explanations). Supporters of mathematical explanation have argued that the explanation of the behaviour of ecosystems (...)
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  8. Scientific fictions as rules of inference.Mauricio Suárez - 2008 - In Mauricio Suárez (ed.), Fictions in Science: Philosophical Essays on Modeling and Idealization. New York: Routledge. pp. 158--178.
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  9. Holobionts: Ecological communities, hybrids, or biological individuals? A metaphysical perspective on multispecies systems.Vanessa Triviño & Javier Suárez - 2020 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences:1-11.
    Holobionts are symbiotic assemblages composed by a macrobe host plus its symbiotic microbiota. In recent years, the ontological status of holobionts has created a great amount of controversy among philosophers and biologists: are holobionts biological individuals or are they rather ecological communities of independent individuals that interact together? Chiu and Eberl have recently developed an eco-immunity account of the holobiont wherein holobionts are neither biological individuals nor ecological communities, but hybrids between a host and its microbiota. According to their account, (...)
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  10. “Microbiota, symbiosis and individuality summer school” meeting report.Isobel Ronai, Gregor P. Greslehner, Federico Boem, Judith Carlisle, Adrian Stencel, Javier Suárez, Saliha Bayir, Wiebke Bretting, Joana Formosinho, Anna C. Guerrero, William H. Morgan, Cybèle Prigot-Maurice, Salome Rodeck, Marie Vasse, Jacqueline M. Wallis & Oryan Zacks - 2020 - Microbiome 8:117.
    How does microbiota research impact our understanding of biological individuality? We summarize the interdisciplinary summer school on "Microbiota, Symbiosis and Individuality: Conceptual and Philosophical Issues" (July 2019), which was supported by a European Research Council starting grant project "Immunity, DEvelopment, and the Microbiota" (IDEM). The summer school centered around interdisciplinary group work on four facets of microbiota research: holobionts, individuality, causation, and human health. The conceptual discussion of cutting-edge empirical research provided new insights into microbiota and highlights the value of (...)
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  11. Do Somatic Cells Really Sacrifice Themselves? Why an Appeal to Coercion May be a Helpful Strategy in Explaining the Evolution of Multicellularity.Adrian Stencel & Javier Suárez - 2021 - Biological Theory 16 (2):102-113.
    An understanding of the factors behind the evolution of multicellularity is one of today’s frontiers in evolutionary biology. This is because multicellular organisms are made of one subset of cells with the capacity to transmit genes to the next generation and another subset responsible for maintaining the functionality of the organism, but incapable of transmitting genes to the next generation. The question arises: why do somatic cells sacrifice their lives for the sake of germline cells? How is germ/soma separation maintained? (...)
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  12. Equilibrium explanation as structural non-mechanistic explanation: The case long-term bacterial persistence in human hosts.Javier Suárez & Roger Deulofeu - 2019 - Teorema: International Journal of Philosophy 3 (38):95-120.
    Philippe Huneman has recently questioned the widespread application of mechanistic models of scientific explanation based on the existence of structural explanations, i.e. explanations that account for the phenomenon to be explained in virtue of the mathematical properties of the system where the phenomenon obtains, rather than in terms of the mechanisms that causally produce the phenomenon. Structural explanations are very diverse, including cases like explanations in terms of bowtie structures, in terms of the topological properties of the system, or in (...)
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  13. Bacterial species pluralism in the light of medicine and endosymbiosis.Javier Suárez - 2016 - Theoria: Revista de Teoría, Historia y Fundamentos de la Ciencia 31 (1):91-105.
    This paper aims to offer a new argument in defence bacterial species pluralism. To do so, I shall first present the particular issues derived from the conflict between the non-theoretical understanding of species as units of classification and the theoretical comprehension of them as units of evolution. Secondly, I shall justify the necessity of the concept of species for the bacterial world, and show how medicine and endosymbiotic evolutionary theory make use of different concepts of bacterial species due to their (...)
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  14. The hologenome concept of evolution: a philosophical and biological study.Javier Suárez - 2019 - Dissertation, University of Exeter
    The hologenome concept of evolution is a hypothesis about the evolution of animals and plants. It asserts that the evolution of animals and plants was partially triggered by their interactions with their symbiotic microbiomes. In that vein, the hologenome concept posits that the holobiont (animal host + symbionts of the microbiome) is a unit of selection. -/- The hologenome concept has been severely criticized on the basis that selection on holobionts would only be possible if there were a tight transgenerational (...)
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  15. (1 other version)When mechanisms are not enough: The origin of eukaryotes and scientific explanation.Roger Deulofeu & Javier Suárez - 2018 - In Alexander Christian, David Hommen, Gerhard Schurz & N. Retzlaff (eds.), Philosophy of Science. European Studies in Philosophy of Science, vol 9. Springer. pp. 95-115.
    The appeal to mechanisms in scientific explanation is commonplace in contemporary philosophy of science. In short, mechanists argue that an explanation of a phenomenon consists of citing the mechanism that brings the phenomenon about. In this paper, we present an argument that challenges the universality of mechanistic explanation: in explanations of the contemporary features of the eukaryotic cell, biologists appeal to its symbiogenetic origin and therefore the notion of symbiogenesis plays the main explanatory role. We defend the notion that symbiogenesis (...)
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  16. Sensory Substitution and Non-Sensory Feelings.David Suarez, Diana Acosta Navas, Umut Baysan & Kevin Connolly - 2018 - In Fiona Macpherson (ed.), Sensory Substitution and Augmentation. Oxford: Proceedings of the British Academy, Oxford University Press.
    One of the central limitations of sensory substitution devices (SSDs) is their inability to reproduce the non-sensory feelings that are normally associated with visual experiences, especially hedonic and aesthetic responses. This limitation is sometimes reported to cause SSD users frustration. To make matters worse, it is unclear that improvements in acuity, bandwidth, or training will resolve the issue. Yet, if SSDs are to actually reproduce visual experience in its fullness, it seems that the reproduction of non-sensory feelings will be of (...)
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  17. El holobionte/hologenoma como nivel de seleccion.Javier Suárez - 2021 - Theoria: Revista de Teoría, Historia y Fundamentos de la Ciencia 36 (1):81-112.
    The units or levels of selection debate concerns the question of what kind of biological systems are stable enough that part of their evolution is a result of the process of natural selection acting at their level. Traditionally, the debate has concerned at least two different, though related, questions: the question of the level at which interaction with the environment occurs, and the question of the level at which reproduction occurs. In recent years, biologists and philosophers have discussed a new (...)
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  18. Sensory Substitution Conference Full Report.Kevin Connolly, Diana Acosta Navas, Umut Baysan, Janiv Paulsberg & David Suarez - manuscript
    This report highlights and explores five questions that arose from the workshop on sensory substitution and augmentation at the British Academy, March 26th through 28th, 2013.
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  19. El mecanismo evolutivo de Margulis y los niveles de selección.Javier Suárez - 2015 - Contrastes: Revista Internacional de Filosofía 20 (1):7-26.
    Margulis’ evolutionary theory entails a revision of certain core concepts of traditional biology. One of these changes is related to the hot debate about units of selection. This paper considers Margulis’ proposal as a new research tradition (RT) and evaluates its consequences to the mentioned issue. Three ideas are suggested here: firstly, that her theory represents the revision of many classical biological concepts; secondly, that her position implies a reappraisal of many traditional issues in philosophy of biology; and thirdly, that (...)
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  20. Strong Constraints on Models that Explain the Violation of Bell Inequalities with Hidden Superluminal Influences.Valerio Scarani, Jean-Daniel Bancal, Antoine Suarez & Nicolas Gisin - 2014 - Foundations of Physics 44 (5):523-531.
    We discuss models that attempt to provide an explanation for the violation of Bell inequalities at a distance in terms of hidden influences. These models reproduce the quantum correlations in most situations, but are restricted to produce local correlations in some configurations. The argument presented in (Bancal et al. Nat Phys 8:867, 2012) applies to all of these models, which can thus be proved to allow for faster-than-light communication. In other words, the signalling character of these models cannot remain hidden.
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  21. Kinds of Models.Adam Morton & Mauricio Suárez - 2001 - In Malcolm G. Anderson & Paul D. Bates (eds.), Model Validation: perspectives in hydrological science. Wiley. pp. 11-22.
    We separate metaphysical from epistemic questions in the evaluation of models, taking into account the distinctive functions of models as opposed to theories. The examples a\are very varied.
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  22. Recognizing Emotion in Music (Network for Sensory Research Toronto Workshop on Perceptual Learning: Question Six).Kevin Connolly, John Donaldson, David M. Gray, Emily McWilliams, Sofia Ortiz-Hinojosa & David Suarez - manuscript
    This is an excerpt from a report that highlights and explores five questions which arose from the workshop on perceptual learning and perceptual recognition at the University of Toronto, Mississauga on May 10th and 11th, 2012. This excerpt explores the question: How do we recognize distinct types of emotion in music?
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  23. Report on the Network for Sensory Research Toronto Workshop on Perceptual Learning.Kevin Connolly, John Donaldson, David M. Gray, Emily McWilliams, Sofia Ortiz-Hinojosa & David Suarez - manuscript
    This report highlights and explores five questions which arose from the workshop on perceptual learning and perceptual recognition at the University of Toronto, Mississauga on May 10th and 11th, 2012: 1. How should we demarcate perceptual learning from perceptual development? 2. What are the origins of multimodal associations? 3. Does our representation of time provide an amodal framework for multi-sensory integration? 4. What counts as cognitive penetration? 5. How can philosophers and psychologists most fruitfully collaborate?
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  24. Cognitive Penetration? (Network for Sensory Research Toronto Workshop on Perceptual Learning: Question Four).Kevin Connolly, John Donaldson, David M. Gray, Emily McWilliams, Sofia Ortiz-Hinojosa & David Suarez - manuscript
    This is an excerpt from a report that highlights and explores five questions which arose from the workshop on perceptual learning and perceptual recognition at the University of Toronto, Mississauga on May 10th and 11th, 2012. This excerpt explores the question: What counts as cognitive penetration?
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  25. Sensory Substitution Conference Report Question One.Kevin Connolly, Diana Acosta Navas, Umut Baysan, Janiv Paulsberg & David Suarez - manuscript
    This is an excerpt from a report on the Sensory Substitution and Augmentation Conference at the British Academy in March of 2013. This portion of the report explores the question: Does sensory substitution generate perceptual or cognitive states?
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  26. Multi-Sensory Integration and Time (Network for Sensory Research Toronto Workshop on Perceptual Learning: Question Three).Kevin Connolly, John Donaldson, David M. Gray, Emily McWilliams, Sofia Ortiz-Hinojosa & David Suarez - manuscript
    This is an excerpt from a report that highlights and explores five questions which arose from the workshop on perceptual learning and perceptual recognition at the University of Toronto, Mississauga on May 10th and 11th, 2012. This excerpt explores the question: Does our representation of time provide and amodal framework for multi-sensory integration?
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  27. Philosophy/Psychology Collaboration (Network for Sensory Research Toronto Workshop on Perceptual Learning: Question Five).Kevin Connolly, John Donaldson, David M. Gray, Emily McWilliams, Sofia Ortiz-Hinojosa & David Suarez - manuscript
    This is an excerpt from a report that highlights and explores five questions which arose from the workshop on perceptual learning and perceptual recognition at the University of Toronto, Mississauga on May 10th and 11th, 2012. This excerpt explores the question: How can philosophers and psychologists most fruitfully collaborate?
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  28. (3 other versions)Sensory Substitution Conference Question Three.Kevin Connolly, Diana Acosta Navas, Umut Baysan, Janiv Paulsberg & David Suarez - manuscript
    This is an excerpt from a report on the Sensory Substitution and Augmentation Conference at the British Academy in March of 2013. This portion of the report explores the question: How does sensory substitution interact with the brain’s architecture?
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  29. Multimodal Associations (Network for Sensory Research Toronto Workshop on Perceptual Learning: Question Two).Kevin Connolly, John Donaldson, David M. Gray, Emily McWilliams, Sofia Ortiz-Hinojosa & David Suarez - manuscript
    This is an excerpt from a report that highlights and explores five questions which arose from the workshop on perceptual learning and perceptual recognition at the University of Toronto, Mississauga on May 10th and 11th, 2012. This excerpt explores the question: What are the origins of multimodal associations?
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  30. Mathematical undecidability, quantum nonlocality, and the question of the existence of God.Alfred Driessen & Antoine Suarez (eds.) - 1997 - Springer.
    The title of the present book suggests that scientific results obtained in mathematics and quantum physics can be in some way related to the question of the existence of God. This seems possible to us, because it is our conviction that reality in all its dimensions is intelligible. The really impressive progress in science and technology demonstrates that we can trust our intellect, and that nature is not offering us a collection of meaningless absurdities. We first of all intend to (...)
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