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  1. Species are Processes: A Solution to the ‘Species Problem’ via an Extension of Ulanowicz’s Ecological Metaphysics. [REVIEW]Jeffrey A. Lockwood - 2012 - Axiomathes 22 (2):231-260.
    Abstract The ‘species problem’ in the philosophy of biology concerns the nature of species. Various solutions have been proposed, including arguments that species are sets, classes, natural kinds, individuals, and homeostatic property clusters. These proposals parallel debates in ecology as to the ontology and metaphysics of populations, communities and ecosystems. A new solution—that species are processes—is proposed and defended, based on Robert Ulanowicz’s metaphysics of process ecology. As with ecological systems, species can be understood as emergent, autocatalytic systems with propensities (...)
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  • Promiscuous Realism.Robert A. Wilson - 1996 - British Journal for the Philosophy of Science 47 (2):303-316.
    This paper is a critical discussion of John Dupré's recent defence of promiscuous realism in Part 1 of his The Disorder of Things: Metaphysical Foundations of the Disunity of Science. It also discusses some more general issues in the philosophy of biology and science. Dupré's chief strategy of argumentation appeals to debates within the philosophy of biology, all of which concern the nature of species. While the strategy is well motivated, I argue that Dupré's challenge to essentialist and unificationist views (...)
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  • An ontogenetic-ecological conception of species: A new approach to an old idea.Catherine Kendig - 2010 - EPSA09: 2nd Conference of the European Philosophy of Science Association. Online at PhilSci Archive.
    This paper outlines an alternative perspective on species that avoids some of the underlying assumptions held by the BSC and other gene-centred species concepts. It begins with a characterisation of the species problem and some of the assumptions underpinning conceptions of species. In particular, the underlying bias of some conceptions (such as the BSC) to focus exclusively on the adult stage of the life cycle in articulating what a species is.
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  • Chicken, eggs, and speciation.Mohan Matthen - 2009 - Noûs 43 (1):94-115.
    Standard biological and philosophical treatments assume that dramatic genotypic or phenotypic change constitutes instantaneous speciation, and that barring such saltation, speciation is gradual evolutionary change in individual properties. Both propositions appear to be incongruent with standard theoretical perspectives on species themselves, since these perspectives are (a) non-pheneticist, and (b) tend to disregard intermediate cases. After reviewing certain key elements of such perspectives, it is proposed that species-membership is mediated by membership in a population. Species-membership depends, therefore, not on intrinsic characteristics (...)
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  • Biometaphysics.Barry Smith - 2009 - In Robin Le Poidevin, Simons Peter, McGonigal Andrew & Ross P. Cameron (eds.), The Routledge Companion to Metaphysics. New York: Routledge. pp. 537-544.
    While Darwin is commonly supposed to have demonstrated the inapplicability of the Aristotelian ontology of species to biological science, recent developments, especially in the wake of the Human Genome Project, have given rise to a new golden age of classification in which ontological ideas -- as for example in the Gene Ontology, the Cell Ontology, the Protein Ontology, and so forth -- are once again playing an important role. In regard to species, on the other hand, matters are more complex. (...)
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  • Resurrecting biological essentialism.Michael Devitt - 2008 - Philosophy of Science 75 (3):344-382.
    The article defends the doctrine that Linnaean taxa, including species, have essences that are, at least partly, underlying intrinsic, mostly genetic, properties. The consensus among philosophers of biology is that such essentialism is deeply wrong, indeed incompatible with Darwinism. I argue that biological generalizations about the morphology, physiology, and behavior of species require structural explanations that must advert to these essential properties. The objection that, according to current “species concepts,” species are relational is rejected. These concepts are primarily concerned with (...)
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  • Defining “Biodiversity”; Assessing Biodiversity.Sahotra Sarkar - 2001 - The Monist 85 (1):131-155.
    This paper analyzes the concept of biodiversity in conservation biology and assesses potential methods for its measurement.
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  • Understanding life: Recent work in philosophy of biology.Kim Sterelny - 1995 - British Journal for the Philosophy of Science 46 (2):155-183.
    This paper surveys recent philosophy of biology. It aims to introduce outsiders to the field to the recent literature (which is reviewed in the footnotes) and the main recent debates. I concentrate on three of these: recent critiques of the replicator/vehicle distinction and its application to the idea of the gene as the unit of section; the recent defences of group selection and the idea that standard alternatives to group selection are in fact no more than a disguised form of (...)
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  • Natural selection and the traits of individual organisms.Joel Pust - 2004 - Biology and Philosophy 19 (5):765-779.
    I have recently argued that origin essentialism regarding individual organisms entails that natural selection does not explain why individual organisms have the traits that they do. This paper defends this and related theses against Mohan Matthen's recent objections.
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  • Bacteria, sex, and systematics.L. R. Franklin - 2007 - Philosophy of Science 74 (1):69-95.
    Philosophical discussions of species have focused on multicellular, sexual animals and have often neglected to consider unicellular organisms like bacteria. This article begins to fill this gap by considering what species concepts, if any, apply neatly to the bacterial world. First, I argue that the biological species concept cannot be applied to bacteria because of the variable rates of genetic transfer between populations, depending in part on which gene type is prioritized. Second, I present a critique of phylogenetic bacterial species, (...)
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  • Eliminative pluralism.Marc Ereshefsky - 1992 - Philosophy of Science 59 (4):671-690.
    This paper takes up the cause of species pluralism. An argument for species pluralism is provided and standard monist objections to pluralism are answered. A new form of species pluralism is developed and shown to be an improvement over previous forms. This paper also offers a general foundation on which to base a pluralistic approach to biological classification.
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  • Species pluralism and anti-realism.Marc Ereshefsky - 1998 - Philosophy of Science 65 (1):103-120.
    Species pluralism gives us reason to doubt the existence of the species category. The problem is not that species concepts are chosen according to our interests or that pluralism and the desire for hierarchical classifications are incompatible. The problem is that the various taxa we call 'species' lack a common unifying feature.
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  • On the metaphysics of species.Judith K. Crane - 2004 - Philosophy of Science 71 (2):156-173.
    This paper explains the metaphysical implications of the view that species are individuals (SAI). I first clarify SAI in light of the separate distinctions between individuals and classes, particulars and universals, and abstract and concrete things. I then show why the standard arguments given in defense of SAI are not compelling. Nonetheless, the ontological status of species is linked to the traditional "species problem," in that certain species concepts do entail that species are individuals. I develop the idea that species (...)
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  • The importance of homology for biology and philosophy.Ingo Brigandt & Paul Edmund Griffiths - 2007 - Biology and Philosophy 22 (5):633-641.
    Editors' introduction to the special issue on homology (Biology and Philosophy Vol. 22, Issue 5, 2007).
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  • Realism, Essence, and Kind: Resuscitating Species Essentialism?Robert A. Wilson - 1999 - In Robert Andrew Wilson (ed.), Species: New Interdisciplinary Essays. MIT Press. pp. 187-207.
    This paper offers an overview of "the species problem", arguing for a view of species as homeostatic property cluster kinds, positioning the resulting form of realism about species as an alternative to the claim that species are individuals and pluralistic views of species. It draws on taxonomic practice in the neurosciences, especially of neural crest cells and retinal ganglion cells, to motivate both the rejection of the species-as-individuals thesis and species pluralism.
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  • NeutroAlgebra is a Generalization of Partial Algebra.Florentin Smarandache - 2020 - International Journal of Neutrosophic Science 2 (1):8-17.
    In this paper we recall, improve, and extend several definitions, properties and applications of our previous 2019 research referred to NeutroAlgebras and AntiAlgebras (also called NeutroAlgebraic Structures and respectively AntiAlgebraic Structures). Let <A> be an item (concept, attribute, idea, proposition, theory, etc.). Through the process of neutrosphication, we split the nonempty space we work on into three regions {two opposite ones corresponding to <A> and <antiA>, and one corresponding to neutral (indeterminate) <neutA> (also denoted <neutroA>) between the opposites}, which may (...)
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  • Biological Individuals.Robert A. Wilson & Matthew J. Barker - 2024 - Stanford Encyclopedia of Philosophy.
    The impressive variation amongst biological individuals generates many complexities in addressing the simple-sounding question what is a biological individual? A distinction between evolutionary and physiological individuals is useful in thinking about biological individuals, as is attention to the kinds of groups, such as superorganisms and species, that have sometimes been thought of as biological individuals. More fully understanding the conceptual space that biological individuals occupy also involves considering a range of other concepts, such as life, reproduction, and agency. There has (...)
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  • (1 other version)Die Architektur der Synthese. Entstehung und Philosophie der modernen Evolutionstheorie.Marcel Weber - 1996 - Dissertation, University of Konstanz
    This Ph.D. thesis provides a pilosophical account of the structure of the evolutionary synthesis of the 1930s and 40s. The first, more historical part analyses how classical genetics came to be integrated into evolutionary thinking, highlighting in particular the importance of chromosomal mapping of Drosophila strains collected in the wild by Dobzansky, but also the work of Goldschmidt, Sumners, Timofeeff-Ressovsky and others. The second, more philosophical part attempts to answer the question wherein the unity of the synthesis consisted. I argue (...)
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  • Philosophy of Biology and Metaphysics: Reconsidering the Aristotelian Approach.Federica Bocchi - 2016 - Dissertation, Università Degli Studi di Parma
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  • 14. Real Traits, Real Functions?Colin Allen - 2002 - In André Ariew, Robert Cummins & Mark Perlman (eds.), Functions: New Essays in the Philosophy of Psychology and Biology. New York: Oxford University Press. pp. 373.
    Discussions of the functions of biological traits generally take the notion of a trait for granted. Defining this notion is a non-trivial problem. Different approaches to function place different constraints on adequate accounts of the notion of a trait. Accounts of function based on engineering-style analyses allow trait boundaries to be a matter of human interest. Accounts of function based on natural selection have typically been taken to require trait boundaries that are objectively real. After canvassing problems raised by each (...)
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  • Towards a Multidimensional Metaconception of Species.Catherine Kendig - 2013 - Ratio 27 (2):155-172.
    Species concepts aim to define the species category. Many of these rely on defining species in terms of natural lineages and groupings. A dominant gene-centred metaconception has shaped notions of what constitutes both a natural lineage and a natural grouping. I suggest that relying on this metaconception provides an incomplete understanding of what constitute natural lineages and groupings. If we take seriously the role of epigenetic, behavioural, cultural, and ecological inheritance systems, rather than exclusively genetic inheritance, a broader notion of (...)
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  • Phylogeny as population history.Joel D. Velasco - 2013 - Philosophy, Theory, and Practice in Biology 5:e402.
    The project of this paper is to understand what a phylogenetic tree represents and to discuss some of the implications that this has for the practice of systematics. At least the first part of this task, if not both parts, might appear trivial—or perhaps better suited for a single page in a textbook rather than a scholarly research paper. But this would be a mistake. While the task of interpreting phylogenetic trees is often treated in a trivial way, their interpretation (...)
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  • Darwinism.James Lennox - 2008 - Stanford Encyclopedia of Philosophy.
    Darwinism designates a distinctive form of evolutionary explanation for the history and diversity of life on earth. Its original formulation is provided in the first edition of On the Origin of Species in 1859. This entry first formulates ‘Darwin's Darwinism’ in terms of five philosophically distinctive themes: (i) probability and chance, (ii) the nature, power and scope of selection, (iii) adaptation and teleology, (iv) nominalism vs. essentialism about species and (v) the tempo and mode of evolutionary change. Both Darwin and (...)
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  • Buffon, Darwin, and the non-individuality of species – a reply to Jean Gayon.David N. Stamos - 1998 - Biology and Philosophy 13 (3):443-470.
    Gayon's recent claim that Buffon developed a concept of species as physical individuals is critically examined and rejected. Also critically examined and rejected is Gayon's more central thesis that as a consequence of his analysis of Buffon's species concept, and also of Darwin's species concept, it is clear that modern evolutionary theory does not require species to be physical individuals. While I agree with Gayon's conclusion that modern evolutionary theory does not require species to be physical individuals, I disagree with (...)
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  • Crossing species boundaries.Jason Scott Robert & Françoise Baylis - 2003 - American Journal of Bioethics 3 (3):1 – 13.
    This paper critically examines the biology of species identity and the morality of crossing species boundaries in the context of emerging research that involves combining human and nonhuman animals at the genetic or cellular level. We begin with the notion of species identity, particularly focusing on the ostensible fixity of species boundaries, and we explore the general biological and philosophical problem of defining species. Against this backdrop, we survey and criticize earlier attempts to forbid crossing species boundaries in the creation (...)
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  • Essential membership.Joseph LaPorte - 1997 - Philosophy of Science 64 (1):96-112.
    In this paper I take issue with the doctrine that organisms belong of their very essence to the natural kinds (or biological taxa, if these are not kinds) to which they belong. This view holds that any human essentially belongs to the species Homo sapiens, any feline essentially belongs to the cat family, and so on. I survey the various competing views in biological systematics. These offer different explanations for what it is that makes a member of one species, family, (...)
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  • Etiological Kinds.Muhammad Ali Khalidi - 2021 - Philosophy of Science 88 (1):1-21.
    Kinds that share historical properties are dubbed “historical kinds” or “etiological kinds,” and they have some distinctive features. I will try to characterize etiological kinds in general terms and briefly survey some previous philosophical discussions of these kinds. Then I will take a closer look at a few case studies involving different types of etiological kinds. Finally, I will try to understand the rationale for classifying on the basis of etiology, putting forward reasons for classifying phenomena on the basis of (...)
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  • What do Biologists Make of the Species Problem?Damjan Franjević, Pavel Gregorić & Bruno Pušić - 2017 - Acta Biotheoretica 65 (3):179-209.
    The concept of species is one of the core concepts in biology and one of the cornerstones of evolutionary biology, yet it is rife with conceptual problems. Philosophers of biology have been discussing the concept of species for decades, and in doing so they sometimes appeal to the views of biologists. However, their statements as to what biologists think are seldom supported by empirical data. In order to investigate what biologists actually think about the key issues related to the problem (...)
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  • Individual essentialism in biology.Michael Devitt - 2018 - Biology and Philosophy 33 (5-6):39.
    A few philosophers of biology have recently explicitly rejected Essential Membership, the doctrine that if an individual organism belongs to a taxon, particularly a species, it does so essentially. But philosophers of biology have not addressed the broader issue, much discussed by metaphysicians on the basis of modal intuitions, of what is essential to the organism. In this paper, I address that issue from a biological basis, arguing for the Kripkean view that an organism has a partly intrinsic, partly historical, (...)
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  • Life and life only: a radical alternative to life definitionism.Carlos Mariscal & W. Ford Doolittle - 2020 - Synthese 197 (7):2975-2989.
    To date, no definition of life has been unequivocally accepted by the scientific community. In frustration, some authors advocate alternatives to standard definitions. These include using a list of characteristic features, focusing on life’s effects, or categorizing biospheres rather than life itself; treating life as a fuzzy category, a process or a cluster of contingent properties; or advocating a ‘wait-and-see’ approach until other examples of life are created or discovered. But these skeptical, operational, and pluralistic approaches have intensified the debate, (...)
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  • Conceptual fragmentation and the rise of eliminativism.Henry Taylor & Peter Vickers - 2015 - European Journal for Philosophy of Science 7 (1):17-40.
    Pluralist and eliminativist positions have proliferated within both science and philosophy of science in recent decades. This paper asks the question why this shift of thinking has occurred, and where it is leading us. We provide an explanation which, if correct, entails that we should expect pluralism and eliminativism to transform other debates currently unaffected, and for good reasons. We then consider the question under what circumstances eliminativism will be appropriate, arguing that it depends not only on the term in (...)
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  • (1 other version)Monistic-Pluralistic Dispute on Living World Genus.Tonći Kokić - 2009 - Filozofska Istrazivanja 29 (2):365-380.
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  • Clades Are Reproducers.Andrew Hamilton & Matthew H. Haber - 2006 - Biological Theory 1 (4):381-391.
    Exploring whether clades can reproduce leads to new perspectives on general accounts of biological development and individuation. Here we apply James Griesemer's general account of reproduction to clades. Griesemer's account of reproduction includes a requirement for development, raising the question of whether clades may bemeaningfully said to develop. We offer two illustrative examples of what clade development might look like, though evaluating these examples proves difficult due to the paucity of general accounts of development. This difficulty, however, is instructive about (...)
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  • Species, languages, and the horizontal/vertical distinction.David N. Stamos - 2002 - Biology and Philosophy 17 (2):171-198.
    In addition to the distinction between species as a category and speciesas a taxon, the word species is ambiguous in a very different butequally important way, namely the temporal distinction between horizontal andvertical species. Although often found in the relevant literature, thisdistinction has thus far remained vague and undefined. In this paper the use ofthe distinction is explored, an attempt is made to clarify and define it, andthen the relation between the two dimensions and the implications of thatrelation are examined. (...)
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  • Variations in Variation and Selection: The Ubiquity of the Variation-and-Selective-Retention Ratchet in Emergent Organizational Complexity. [REVIEW]Mark H. Bickhard & Donald T. Campbell - 2003 - Foundations of Science 8 (3):215-282.
    The variation and selection form of explanationcan be prescinded from the evolutionary biologyhome ground in which it was discovered and forwhich it has been most developed. When this isdone, variation and selection explanations arefound to have potential application to a widerange of phenomena, far beyond the classicalbiological ground and the contemporaryextensions into epistemological domains. Itappears as the form of explanation most suitedto phenomena of fit. It is also found toparticipate in multiple interestingrelationships with other forms of explanation. We proceed with (...)
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  • Realism and Lexical Flexibility.Christopher A. Vogel - 2020 - Theoria 86 (2):145-186.
    Metaphysical investigation often proceeds by way of linguistic meaning. This tradition relies on an assumption about meanings, namely that they can be given in terms of referential relations and truth. Chomsky and others have illustrated the difficulty with this externalist hypothesis regarding natural language meanings, which implies that natural languages are ill‐suited for the purposes of metaphysical investigation. In reply to this discordance between the features of natural languages and the goals of metaphysical investigation, metaphysicians propose that we look to (...)
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  • The Current Status of the Philosophy of Biology.Peter Takacs & Michael Ruse - 2013 - Science & Education 22 (1):5-48.
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  • Conceptualizing communities as natural entities: a philosophical argument with basic and applied implications.David A. Steen, Kyle Barrett, Ellen Clarke & Craig Guyer - 2017 - Biology and Philosophy 32 (6):1019-1034.
    Recent work has suggested that conservation efforts such as restoration ecology and invasive species eradication are largely value-driven pursuits. Concurrently, changes to global climate are forcing ecologists to consider if and how collections of species will migrate, and whether or not we should be assisting such movements. Herein, we propose a philosophical framework which addresses these issues by utilizing ecological and evolutionary interrelationships to delineate individual ecological communities. Specifically, our Evolutionary Community Concept recognizes unique collections of species that interact and (...)
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  • Ecosystem Evolution is About Variation and Persistence, not Populations and Reproduction.Frédéric Bouchard - 2014 - Biological Theory 9 (4):382-391.
    Building upon a non-standard understanding of evolutionary process focusing on variation and persistence, I will argue that communities and ecosystems can evolve by natural selection as emergent individuals. Evolutionary biology has relied ever increasingly on the modeling of population dynamics. Most have taken for granted that we all agree on what is a population. Recent work has reexamined this perceived consensus. I will argue that there are good reasons to restrict the term “population” to collections of monophyletically related replicators and (...)
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  • Integration, individuality and species concepts.Lee Michael & Wolsan Mieczyslaw - 2002 - Biology and Philosophy 17 (5):651-660.
    Integration (interaction among parts of an entity) is suggested to be necessary for individuality (contra, Metaphysics and the Origin of Species). A synchronic species is an integrated individual that can evolve as a unified whole; a diachronic lineage is a non-integrated historical entity that cannot evolve. Synchronic species and diachronic lineages are consequently suggested to be ontologically distinct entities, rather than alternative perspectives of the same underlying entity (contra Baum (1998), Syst. Biol. 47, 641–653; de Queiroz (1995), Endless Forms: Species (...)
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  • Biological Species Are Natural Kinds.Crawford L. Elder - 2008 - Southern Journal of Philosophy 46 (3):339-362.
    This paper argues that typical biological species are natural kinds, on a familiar realist understanding of natural kinds—classes of individuals across which certain properties cluster together, in virtue of the causal workings of the world. But the clustering is far from exceptionless. Virtually no properties, or property-combinations, characterize every last member of a typical species—unless they can also appear outside the species. This motivates some to hold that what ties together the members of a species is the ability to interbreed, (...)
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  • Microbiology and the species problem.Marc Ereshefsky - 2010 - Biology and Philosophy 25 (4):553-568.
    This paper examines the species problem in microbiology and its implications for the species problem more generally. Given the different meanings of ‘species’ in microbiology, the use of ‘species’ in biology is more multifarious and problematic than commonly recognized. So much so, that recent work in microbial systematics casts doubt on the existence of a prokaryote species category in nature. It also casts doubt on the existence of a general species category for all of life (one that includes both prokaryotes (...)
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  • Some problems with the linnaean hierarchy.Marc Ereshefsky - 1994 - Philosophy of Science 61 (2):186-205.
    Most biologists use the Linnaean system for constructing classifications of the organic world. The Linnaean system, however, has lost its theoretical basis due to the shift in biology from creationist and essentialist tenets to evolutionary theory. As a result, the Linnaean system is both cumbersome and ontologically vacuous. This paper illustrates the problems facing the Linnaean system, and ends with a brief introduction to an alternative approach to biological classification.
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  • Species as individuals.Berit Brogaard - 2004 - Biology and Philosophy 19 (2):223-242.
    There is no question that the constituents of cells and organisms are joined together by the part-whole relation. Genes are part of cells, and cells are part of organisms. Species taxa, however, have traditionally been conceived of, not as wholes with parts, but as classes with members. But why does the relation change abruptly from part-whole to class-membership above the level of organisms? Ghiselin, Hull and others have argued that it doesn't. Cells and organisms are cohesive mereological sums, and since (...)
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  • Beyond “individuality” and “pluralism”: A review of ereshefsky'sunits of evolution: Essays on the nature of species. [REVIEW]Todd A. Grantham - 1993 - Biology and Philosophy 8 (4):457-468.
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  • Hidden treasure in the linnean hierarchy.John Dupré - 2002 - Biology and Philosophy 17 (3):423-433.
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  • John S. Wilkins: Species: A History of the Idea.Richard A. Richards - 2013 - Science & Education 22 (2):391-398.
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  • (1 other version)The Disorder of Things. [REVIEW]Marc Ereshefsky - 1995 - Canadian Journal of Philosophy 25 (1):143-158.
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  • The minimal role of the higher categories in biology.Michael Devitt - 2022 - Biology and Philosophy 38 (1):1-9.
    Talk of higher categories (ranks) like Genus and Family is ubiquitous in biology. Yet there is widespread skepticism about these categories. We can locate the source of this skepticism in the lack of “robust concepts” for these categories, robust theories of what it is to be in a certain category. A common defense of category talk is that its virtues are “just pragmatic and not theoretic”. But this strains credulity. We should suppose rather that talk of the higher categories does (...)
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  • (2 other versions)Classes or Individuals? The Paradox of Systematics Revisited.Alessandro Rapini - 2004 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 35 (4):675-695.
    The circumscription of taxa and classification of organisms are fundamental tasks in the systematization of biological diversity. Their success depends on a unified idea concerning the species concept, evolution, and taxonomy; paradoxically, however, it requires a complete distinction between taxa and evolutionary units. To justify this view, I discuss these three topics of systematics. Species concepts are examined, and I propose a redefinition for the Taxonomic Species Concept based on nomenclatural properties, in which species are classes conventionally represented by a (...)
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