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  1. Explaining AI through mechanistic interpretability.Lena Kästner & Barnaby Crook - 2024 - European Journal for Philosophy of Science 14 (4):1-25.
    Recent work in explainable artificial intelligence (XAI) attempts to render opaque AI systems understandable through a divide-and-conquer strategy. However, this fails to illuminate how trained AI systems work as a whole. Precisely this kind of functional understanding is needed, though, to satisfy important societal desiderata such as safety. To remedy this situation, we argue, AI researchers should seek mechanistic interpretability, viz. apply coordinated discovery strategies familiar from the life sciences to uncover the functional organisation of complex AI systems. Additionally, theorists (...)
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  • Constraint-based reasoning in cell biology: on the explanatory role of context.Karl S. Matlin & Sara Green - 2024 - History and Philosophy of the Life Sciences 46 (3):1-26.
    Cell biologists, including those seeking molecular mechanistic explanations of cellular phenomena, frequently rely on experimental strategies focused on identifying the cellular context relevant to their investigations. We suggest that such practices can be understood as a guided decomposition strategy, where molecular explanations of phenomena are defined in relation to natural contextual (cell) boundaries. This “top-down” strategy contrasts with “bottom-up” reductionist approaches where well-defined molecular structures and activities are orphaned by their displacement from actual biological functions. We focus on the central (...)
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  • Eating and Cognition in Two Animals without Neurons: Sponges and Trichoplax.William Bechtel & Leonardo Bich - 2024 - Biological Theory:1-14.
    Eating is a fundamental behavior in which all organisms must engage in order to procure the material and energy from their environment that they need to maintain themselves. Since controlling eating requires procuring, processing, and assessing information, it constitutes a cognitive activity that provides a productive domain for pursuing cognitive biology as proposed by Ladislav Kováč. In agreement with Kováč, we argue that cognition is fundamentally grounded in chemical signaling and processing. To support this thesis, we adopt Cisek’s strategy of (...)
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  • Integrating Multicellular Systems: Physiological Control and Degrees of Biological Individuality.Leonardo Bich - 2023 - Acta Biotheoretica 72 (1):1-22.
    This paper focuses on physiological integration in multicellular systems, a notion often associated with biological individuality, but which has not received enough attention and needs a thorough theoretical treatment. Broadly speaking, physiological integration consists in how different components come together into a cohesive unit in which they are dependent on one another for their existence and activity. This paper argues that physiological integration can be understood by considering how the components of a biological multicellular system are controlled and coordinated in (...)
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  • Discovering Autoinhibition as a Design Principle for the Control of Biological Mechanisms.Andrew Bollhagen & William Bechtel - 2022 - Studies in History and Philosophy of Science 95 (C):145-157.
    Autoinhibition is a design principle realized in many molecular mechanisms in biology. After explicating the notion of a design principle and showing that autoinhibition is such a principle, we focus on how researchers discovered instances of autoinhibition, using research establishing the autoinhibition of the molecular motors kinesin and dynein as our case study. Research on kinesin and dynein began in the fashion described in accounts of mechanistic explanation but, once the mechanisms had been discovered, researchers discovered that they exhibited a (...)
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  • Motivation, counterfactual predictions and constraints: normativity of predictive mechanisms.Michał Piekarski - 2022 - Synthese 200 (5):1-31.
    The aim of this paper is to present the ontic approach to the normativity of cognitive functions and mechanisms, which is directly related to the understanding of biological normativity in terms of normative mechanisms. This approach assumes the hypothesis that cognitive processes contain a certain normative component independent of external attributions and researchers’ beliefs. This component consists of specific cognitive mechanisms, which I call normative. I argue that a mechanism is normative when it constitutes given actions or behaviors of a (...)
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  • Organization needs organization: Understanding integrated control in living organisms.Leonardo Bich & William Bechtel - 2022 - Studies in History and Philosophy of Science Part A 93:96-106.
    Organization figures centrally in the understanding of biological systems advanced by both new mechanists and proponents of the autonomy framework. The new mechanists focus on how components of mechanisms are organized to produce a phenomenon and emphasize productive continuity between these components. The autonomy framework focuses on how the components of a biological system are organized in such a way that they contribute to the maintenance of the organisms that produce them. In this paper we analyze and compare these two (...)
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  • Mechanism, autonomy and biological explanation.Leonardo Bich & William Bechtel - 2021 - Biology and Philosophy 36 (6):1-27.
    The new mechanists and the autonomy approach both aim to account for how biological phenomena are explained. One identifies appeals to how components of a mechanism are organized so that their activities produce a phenomenon. The other directs attention towards the whole organism and focuses on how it achieves self-maintenance. This paper discusses challenges each confronts and how each could benefit from collaboration with the other: the new mechanistic framework can gain by taking into account what happens outside individual mechanisms, (...)
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  • Active biological mechanisms: transforming energy into motion in molecular motors.William Bechtel & Andrew Bollhagen - 2021 - Synthese 199 (5-6):12705-12729.
    Unless one embraces activities as foundational, understanding activities in mechanisms requires an account of the means by which entities in biological mechanisms engage in their activities—an account that does not merely explain activities in terms of more basic entities and activities. Recent biological research on molecular motors exemplifies such an account, one that explains activities in terms of free energy and constraints. After describing the characteristic “stepping” activities of these molecules and mapping the stages of those steps onto the stages (...)
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  • Naturalización de la Metafísica Modal.Carlos Romero - 2021 - Dissertation, National Autonomous University of Mexico
    ⦿ In my dissertation I introduce, motivate and take the first steps in the implementation of, the project of naturalising modal metaphysics: the transformation of the field into a chapter of the philosophy of science rather than speculative, autonomous metaphysics. -/- ⦿ In the introduction, I explain the concept of naturalisation that I apply throughout the dissertation, which I argue to be an improvement on Ladyman and Ross' proposal for naturalised metaphysics. I also object to Williamson's proposal that modal metaphysics (...)
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  • Model Organisms for Studying Decision-Making: A Phylogenetically Expanded Perspective.Linus Ta-Lun Huang, Leonardo Bich & William Bechtel - 2021 - Philosophy of Science 88 (5):1055-1066.
    This article explores the use of model organisms in studying the cognitive phenomenon of decision-making. Drawing on the framework of biological control to develop a skeletal conception of decision-making, we show that two core features of decision-making mechanisms can be identified by studying model organisms, such as E. coli, jellyfish, C. elegans, lamprey, and so on. First, decision mechanisms are distributed and heterarchically structured. Second, they depend heavily on chemical information processing, such as that involving neuromodulators. We end by discussing (...)
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  • Philosophy of Cell Biology.William Bechtel & Andrew Bollhagen - 2019 - Stanford Encyclopedia of Philosophy.
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  • The Mechanistic and Normative Structure of Agency.Jason Winning - 2019 - Dissertation, University of California San Diego
    I develop an interdisciplinary framework for understanding the nature of agents and agency that is compatible with recent developments in the metaphysics of science and that also does justice to the mechanistic and normative characteristics of agents and agency as they are understood in moral philosophy, social psychology, neuroscience, robotics, and economics. The framework I develop is internal perspectivalist. That is to say, it counts agents as real in a perspective-dependent way, but not in a way that depends on an (...)
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  • Diachronic causal constitutive relations.Bert Leuridan & Thomas Lodewyckx - 2020 - Synthese (9):1-31.
    Mechanistic approaches are very common in the causal interpretation of biological and neuroscientific experimental work in today’s philosophy of science. In the mechanistic literature a strict distinction is often made between causal relations and constitutive relations, where the latter cannot be causal. One of the typical reasons for this strict distinction is that constitutive relations are supposedly synchronic whereas most if not all causal relations are diachronic. This strict distinction gives rise to a number of problems, however. Our end goal (...)
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  • Integrated-structure emergence and its mechanistic explanation.Gil Santos - 2020 - Synthese 198 (9):8687-8711.
    This paper proposes an integrated-structure notion of interlevel emergence, from a dynamic relational ontological perspective. First, I will argue that only the individualist essentialism of atomistic metaphysics can block the possibility of interlevel emergence. Then I will show that we can make sense of emergence by recognizing the formation of structures of transformative and interdependent causal relations in the generation and development of a particular class of mereological complexes called integrated systems. Finally, I shall argue that even though the emergent (...)
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  • Glycemia Regulation: From Feedback Loops to Organizational Closure.Leonardo Bich, Matteo Mossio & Ana M. Soto - 2020 - Frontiers in Physiology 11.
    Endocrinologists apply the idea of feedback loops to explain how hormones regulate certain bodily functions such as glucose metabolism. In particular, feedback loops focus on the maintenance of the plasma concentrations of glucose within a narrow range. Here, we put forward a different, organicist perspective on the endocrine regulation of glycaemia, by relying on the pivotal concept of closure of constraints. From this perspective, biological systems are understood as organized ones, which means that they are constituted of a set of (...)
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  • Understanding Multicellularity: The Functional Organization of the Intercellular Space.Leonardo Bich, Thomas Pradeu & Jean-Francois Moreau - 2019 - Frontiers in Physiology 10.
    The aim of this paper is to provide a theoretical framework to understand how multicellular systems realize functionally integrated physiological entities by organizing their intercellular space. From a perspective centered on physiology and integration, biological systems are often characterized as organized in such a way that they realize metabolic self-production and self-maintenance. The existence and activity of their components rely on the network they realize and on the continuous management of the exchange of matter and energy with their environment. One (...)
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  • An organisational approach to biological communication.Ramiro Frick, Leonardo Bich & Alvaro Moreno - 2019 - Acta Biotheoretica (2):103-128.
    This paper aims to provide a philosophical and theoretical account of biological communication grounded in the notion of organisation. The organisational approach characterises living systems as organised in such a way that they are capable to self-produce and self-maintain while in constant interaction with the environment. To apply this theoretical framework to the study of biological communication, we focus on a specific approach, based on the notion of influence, according to which communication takes place when a signal emitted by a (...)
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  • Empirical moral rationalism and the social constitution of normativity.Joseph Jebari - 2019 - Philosophical Studies 176 (9):2429-2453.
    Moral rationalism has long been an attractive position within moral philosophy. However, among empirical-minded philosophers, it is widely dismissed as scientifically untenable. In this essay, I argue that moral rationalism’s lack of uptake in the empirical domain is due to the widespread supposition that moral rationalists must hold that moral judgments and actions are produced by rational capacities. But this construal is mistaken: moral rationalism’s primary concern is not with the relationship between moral judgments and rational capacities per se, but (...)
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  • Levels in Biological Organisms: Hierarchy of Production Mechanisms, Heterarchy of Control Mechanisms.William Bechtel - 2022 - The Monist 105 (2):156-174.
    Among the notions of levels invoked in accounts of biological phenomena, I focus on two: levels of production mechanisms and levels of control mechanisms. I argue that these two notions of level exhibit different characteristics: production mechanisms are organized hierarchically while control mechanisms are often organized heterarchically. I illustrate the differences in these modes of organization by examining production and control mechanisms involved in cell division in Escherichia coli and in circulation of blood in mammals. I conclude by exploring how (...)
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  • Flat mechanisms: a reductionist approach to levels in mechanistic explanations.Peter Fazekas - 2022 - Philosophical Studies 179 (7):2303-2321.
    The mechanistic framework traditionally comes bundled with a multi-level view. Some ascribe ontological weight to these levels, whereas others claim that characterising a higher-level entity and the corresponding lower-level mechanism are only different descriptions of the same thing. The goal of this paper is to develop a consistent metaphysical picture that can underly the latter position. According to this flat view, wholes and their parts are embedded in the same network of interacting units. The flat view preserves the original virtues (...)
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  • Resonance and radical embodiment.Vicente Raja - 2020 - Synthese 199 (Suppl 1):113-141.
    One big challenge faced by cognitive science is the development of a unified theory that integrates disparate scales of analysis of cognitive phenomena. In this paper, I offer a unified framework that provides a way to integrate neural and behavioral scales of analysis of cognitive phenomena—typically addressed by neuroscience and experimental psychology, respectively. The framework is based on the concept of resonance originated in ecological psychology and aims to be the foundation for a unified theory for radical embodiment; that is, (...)
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  • (1 other version)Robustness and autonomy in biological systems: how regulatory mechanisms enable functional integration, complexity and minimal cognition through the action of second-order control constraints.Leonardo Bich - 2018 - In Marta Bertolaso, Silvia Caianiello & Emanuele Serrelli (eds.), Biological Robustness. Emerging Perspectives from within the Life Sciences. Cham: Springer. pp. 123-147.
    Living systems employ several mechanisms and behaviors to achieve robustness and maintain themselves under changing internal and external conditions. Regulation stands out from them as a specific form of higher-order control, exerted over the basic regime responsible for the production and maintenance of the organism, and provides the system with the capacity to act on its own constitutive dynamics. It consists in the capability to selectively shift between different available regimes of self-production and self-maintenance in response to specific signals and (...)
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  • Tracers in neuroscience: Causation, constraints, and connectivity.Lauren N. Ross - 2021 - Synthese 199 (1-2):4077-4095.
    This paper examines tracer techniques in neuroscience, which are used to identify neural connections in the brain and nervous system. These connections capture a type of “structural connectivity” that is expected to inform our understanding of the functional nature of these tissues. This is due to the fact that neural connectivity constrains the flow of signal propagation, which is a type of causal process in neurons. This work explores how tracers are used to identify causal information, what standards they are (...)
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  • Structural and organisational conditions for being a machine.Guglielmo Militello & Álvaro Moreno - 2018 - Biology and Philosophy 33 (5-6):35.
    Although the analogy between macroscopic machines and biological molecular devices plays an important role in the conceptual framework of both neo-mechanistic accounts and nanotechnology, it has recently been claimed that certain complex molecular devices cannot be considered machines since they are subject to physicochemical forces that are different from those of macroscopic machines. However, the structural and physicochemical conditions that allow both macroscopic machines and microscopic devices to work and perform new functions, through a combination of elemental functional parts, have (...)
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  • (2 other versions)Mechanistic Causation and Constraints: Perspectival Parts and Powers, Non-perspectival Modal Patterns.Jason Winning - 2020 - British Journal for the Philosophy of Science 71 (4):1385-1409.
    Any successful account of the metaphysics of mechanistic causation must satisfy at least five key desiderata. In this article, I lay out these five desiderata and explain why existing accounts of the metaphysics of mechanistic causation fail to satisfy them. I then present an alternative account that does satisfy the five desiderata. According to this alternative account, we must resort to a type of ontological entity that is new to metaphysics, but not to science: constraints. In this article, I explain (...)
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  • Traversing Technology Trajectories.Frederick Klaessig - 2021 - NanoEthics 15 (2):149-168.
    Scholars in science and technology studies, as well as economics and innovation studies, utilize the trajectory metaphor in describing a technology’s maturation. Impetus and purpose may differ, but the trajectory serves as a shared tool for assessing social change either in society at large or within a market sector, a firm, or a discipline. In reverse, the lens of a technology trajectory can be a basis for assessing technology, estimating economic growth, and selecting among plausible product development pathways. Emerging technologies (...)
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  • Normatywne mechanizmy reprezentacyjne a koherencyjna koncepcja błędu reprezentacyjnego.Michał Piekarski - 2020 - Avant: Trends in Interdisciplinary Studies 11 (3).
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  • Techne in Affective Posthumanism and AI Artefacts: More (or Less) than Human?Denis Larrivee - 2020 - Open Journal of Philosophy 10 (1):66-87.
    In affective neuroscience, constructivist models are acutely influenced by the modern technological evolution, which underwrites an ongoing epistemological substitution of techne for episteme. Evidenced symptomatically in the influence of artificial intelligence (AI), affective artefacts, these models inform an ontological incursion of techne seen to coincide with posthumanist aspirations and anthropology. It is from the perspective of this neuroscientific techne that posthumanism views the human being as increasingly ill adapted to the modern technological civilization, which, conversely, is understood to require a (...)
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