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Levels of Organization in Biology

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  1. Scientific Realism and the Plasticity of Mind.Paul M. Churchland (ed.) - 1979 - New York: Cambridge University Press.
    A study in the philosophy of science, proposing a strong form of the doctrine of scientific realism' and developing its implications for issues in the philosophy of mind.
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  • Explaining the Brain.Carl F. Craver - 2007 - Oxford, GB: Oxford University Press.
    Carl F. Craver investigates what we are doing when we use neuroscience to explain what's going on in the brain. When does an explanation succeed and when does it fail? Craver offers explicit standards for successful explanation of the workings of the brain, on the basis of a systematic view about what neuroscientific explanations are.
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  • Unto Others: The Evolution and Psychology of Unselfish Behavior.Elliott Sober & David Sloan Wilson - 1998 - Harvard University Press.
    The authors demonstrate that unselfish behavior is in fact an important feature of both biological and human nature. Their book provides a panoramic view of altruism throughout the animal kingdom--from self-sacrificing parasites to the human capacity for selflessness--even as it explains the evolutionary sense of such behavior.
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  • Physicalism, or Something Near Enough.Jaegwon Kim - 2005 - Princeton University Press.
    "This is a fine volume that clarifies, defends, and moves beyond the views that Kim presented in Mind in a Physical World.
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  • Re-engineering philosophy for limited beings: piecewise approximations to reality.William C. Wimsatt - 2007 - Cambridge: Harvard University Press.
    This book offers a philosophy for error-prone humans trying to understand messy systems in the real world.
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  • The Structure of Science: Problems in the Logic of Scientific Explanation.Ernest Nagel - 1961 - New York, NY, USA: Harcourt, Brace & World.
    Introduction: Science and Common Sense Long before the beginnings of modern civilization, men ac- quired vast funds of information about their environment. ...
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  • Idealization and the Aims of Science.Angela Potochnik - 2017 - Chicago: University of Chicago Press.
    Science is the study of our world, as it is in its messy reality. Nonetheless, science requires idealization to function—if we are to attempt to understand the world, we have to find ways to reduce its complexity. Idealization and the Aims of Science shows just how crucial idealization is to science and why it matters. Beginning with the acknowledgment of our status as limited human agents trying to make sense of an exceedingly complex world, Angela Potochnik moves on to explain (...)
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  • Functional analysis.Robert E. Cummins - 1975 - Journal of Philosophy 72 (November):741-64.
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  • Evolution and the levels of selection.Samir Okasha - 2006 - New York: Oxford University Press.
    Does natural selection act primarily on individual organisms, on groups, on genes, or on whole species? The question of levels of selection - on which biologists and philosophers have long disagreed - is central to evolutionary theory and to the philosophy of biology. Samir Okasha's comprehensive analysis gives a clear account of the philosophical issues at stake in the current debate.
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  • Every Thing Must Go: Metaphysics Naturalized.James Ladyman & Don Ross - 2007 - In James Ladyman & Don Ross, Every thing must go: metaphysics naturalized. New York: Oxford University Press.
    This book argues that the only kind of metaphysics that can contribute to objective knowledge is one based specifically on contemporary science as it really is, and not on philosophers' a priori intuitions, common sense, or simplifications of science. In addition to showing how recent metaphysics has drifted away from connection with all other serious scholarly inquiry as a result of not heeding this restriction, this book demonstrates how to build a metaphysics compatible with current fundamental physics, which, when combined (...)
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  • Mental Mechanisms: Philosophical Perspectives on Cognitive Neuroscience.William Bechtel - 2007 - Psychology Press.
    A variety of scientific disciplines have set as their task explaining mental activities, recognizing that in some way these activities depend upon our brain. But, until recently, the opportunities to conduct experiments directly on our brains were limited. As a result, research efforts were split between disciplines such as cognitive psychology, linguistics, and artificial intelligence that investigated behavior, while disciplines such as neuroanatomy, neurophysiology, and genetics experimented on the brains of non-human animals. In recent decades these disciplines integrated, and with (...)
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  • The Structure of Biological Science.Alexander Rosenberg - 1985 - New York: Cambridge University Press.
    This book provides a comprehensive guide to the conceptual methodological, and epistemological problems of biology, and treats in depth the major developments in molecular biology and evolutionary theory that have transformed both biology and its philosophy in recent decades. At the same time the work is a sustained argument for a particular philosophy of biology that unifies disparate issues and offers a framework for expectations about the future directions of the life sciences. The argument explores differences between autonomist and anti-autonomist (...)
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  • Process and reality: an essay in cosmology.Alfred North Whitehead - 1929 - New York: Free Press. Edited by David Ray Griffin & Donald W. Sherburne.
    Process and Reality, Whitehead’s magnum opus, is one of the major philosophical works of the modern world, and an extensive body of secondary literature has developed around it. Yet surely no significant philosophical book has appeared in the last two centuries in nearly so deplorable a condition as has this one, with its many hundreds of errors and with over three hundred discrepancies between the American and the English editions, which appeared in different formats with divergent paginations. The work itself (...)
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  • Discovery and explanation in biology and medicine.Kenneth F. Schaffner - 1993 - Chicago: University of Chicago Press.
    Kenneth F. Schaffner compares the practice of biological and medical research and shows how traditional topics in philosophy of science—such as the nature of theories and of explanation—can illuminate the life sciences. While Schaffner pays some attention to the conceptual questions of evolutionary biology, his chief focus is on the examples that immunology, human genetics, neuroscience, and internal medicine provide for examinations of the way scientists develop, examine, test, and apply theories. Although traditional philosophy of science has regarded scientific discovery—the (...)
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  • Unsimple Truths: Science, Complexity, and Policy.Sandra D. Mitchell - 2009 - London: University of Chicago Press.
    The world is complex, but acknowledging its complexity requires an appreciation for the many roles context plays in shaping natural phenomena. In _Unsimple Truths, _Sandra Mitchell argues that the long-standing scientific and philosophical deference to reductive explanations founded on simple universal laws, linear causal models, and predict-and-act strategies fails to accommodate the kinds of knowledge that many contemporary sciences are providing about the world. She advocates, instead, for a new understanding that represents the rich, variegated, interdependent fabric of many levels (...)
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  • Biological Complexity and Integrative Pluralism.Sandra D. Mitchell - 2003 - Cambridge University Press.
    This fine collection of essays by a leading philosopher of science presents a defence of integrative pluralism as the best description for the complexity of scientific inquiry today. The tendency of some scientists to unify science by reducing all theories to a few fundamental laws of the most basic particles that populate our universe is ill-suited to the biological sciences, which study multi-component, multi-level, evolved complex systems. This integrative pluralism is the most efficient way to understand the different and complex (...)
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  • Making sense of emergence.Jaegwon Kim - 1999 - Philosophical Studies 95 (1-2):3-36.
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  • The Mind and its Place in Nature.Charlie Dunbar Broad - 1925 - London, England: Routledge.
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  • (1 other version)Psychoneural Reduction: The New Wave.John Bickle - 1998 - Bradford.
    One of the central problems in the philosophy of psychology is an updated version of the old mind-body problem: how levels of theories in the behavioral and brain sciences relate to one another. Many contemporary philosophers of mind believe that cognitive-psychological theories are not reducible to neurological theories. However, this antireductionism has not spawned a revival of dualism. Instead, most nonreductive physicalists prefer the idea of a one-way dependence of the mental on the physical.In Psychoneural Reduction, John Bickle presents a (...)
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  • Top-down causation without top-down causes.Carl F. Craver & William Bechtel - 2007 - Biology and Philosophy 22 (4):547-563.
    We argue that intelligible appeals to interlevel causes (top-down and bottom-up) can be understood, without remainder, as appeals to mechanistically mediated effects. Mechanistically mediated effects are hybrids of causal and constitutive relations, where the causal relations are exclusively intralevel. The idea of causation would have to stretch to the breaking point to accommodate interlevel causes. The notion of a mechanistically mediated effect is preferable because it can do all of the required work without appealing to mysterious interlevel causes. When interlevel (...)
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  • Interventionism and Causal Exclusion.James Woodward - 2015 - Philosophy and Phenomenological Research 91 (2):303-347.
    A number of writers, myself included, have recently argued that an “interventionist” treatment of causation of the sort defended in Woodward, 2003 can be used to cast light on so-called “causal exclusion” arguments. This interventionist treatment of causal exclusion has in turn been criticized by other philosophers. This paper responds to these criticisms. It describes an interventionist framework for thinking about causal relationships when supervenience relations are present. I contend that this framework helps us to see that standard arguments for (...)
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  • 1953 and all that. A tale of two sciences.Philip Kitcher - 1984 - Philosophical Review 93 (3):335-373.
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  • (1 other version)The Great Chain of Being: A Study of the History of an Idea.Arthur O. Lovejoy - 1936 - Cambridge, Mass.,: Transaction Publishers.
    This is arguably the seminal work in historical andphilosophical analysis of the twentieth century.
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  • Constitutive relevance & mutual manipulability revisited.Carl F. Craver, Stuart Glennan & Mark Povich - 2021 - Synthese 199 (3-4):8807-8828.
    An adequate understanding of the ubiquitous practice of mechanistic explanation requires an account of what Craver termed “constitutive relevance.” Entities or activities are constitutively relevant to a phenomenon when they are parts of the mechanism responsible for that phenomenon. Craver’s mutual manipulability account extended Woodward’s account of manipulationist counterfactuals to analyze how interlevel experiments establish constitutive relevance. Critics of MM argue that applying Woodward’s account to this philosophical problem conflates causation and constitution, thus rendering the account incoherent. These criticisms, we (...)
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  • Approaches to reduction.Kenneth F. Schaffner - 1967 - Philosophy of Science 34 (2):137-147.
    Four current accounts of theory reduction are presented, first informally and then formally: (1) an account of direct theory reduction that is based on the contributions of Nagel, Woodger, and Quine, (2) an indirect reduction paradigm due to Kemeny and Oppenheim, (3) an "isomorphic model" schema traceable to Suppes, and (4) a theory of reduction that is based on the work of Popper, Feyerabend, and Kuhn. Reference is made, in an attempt to choose between these schemas, to the explanation of (...)
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  • The Concept of Mechanism in Biology.Daniel J. Nicholson - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):152-163.
    The concept of mechanism in biology has three distinct meanings. It may refer to a philosophical thesis about the nature of life and biology (‘mechanicism’), to the internal workings of a machine-like structure (‘machine mechanism’), or to the causal explanation of a particular phenomenon (‘causal mechanism’). In this paper I trace the conceptual evolution of ‘mechanism’ in the history of biology, and I examine how the three meanings of this term have come to be featured in the philosophy of biology, (...)
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  • (1 other version)The rise and fall of british emergentism.Brian P. Mclaughlin - 1992 - In Ansgar Beckermann, Hans Flohr & Jaegwon Kim, Emergence or Reduction?: Prospects for Nonreductive Physicalism. New York: De Gruyter. pp. 49-93.
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  • Neither Logical Empiricism nor Vitalism, but Organicism: What the Philosophy of Biology Was.Daniel J. Nicholson & Richard Gawne - 2015 - History and Philosophy of the Life Sciences 37 (4):345-381.
    Philosophy of biology is often said to have emerged in the last third of the twentieth century. Prior to this time, it has been alleged that the only authors who engaged philosophically with the life sciences were either logical empiricists who sought to impose the explanatory ideals of the physical sciences onto biology, or vitalists who invoked mystical agencies in an attempt to ward off the threat of physicochemical reduction. These schools paid little attention to actual biological science, and as (...)
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  • Causation, exclusion, and the special sciences.Panu Raatikainen - 2010 - Erkenntnis 73 (3):349-363.
    The issue of downward causation (and mental causation in particular), and the exclusion problem is discussed by taking into account some recent advances in the philosophy of science. The problem is viewed from the perspective of the new interventionist theory of causation developed by Woodward. It is argued that from this viewpoint, a higher-level (e.g., mental) state can sometimes truly be causally relevant, and moreover, that the underlying physical state which realizes it may fail to be such.
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  • The Limitations of Hierarchical Organization.Angela Potochnik & Brian McGill - 2012 - Philosophy of Science 79 (1):120-140.
    The concept of hierarchical organization is commonplace in science. Subatomic particles compose atoms, which compose molecules; cells compose tissues, which compose organs, which compose organisms; etc. Hierarchical organization is particularly prominent in ecology, a field of research explicitly arranged around levels of ecological organization. The concept of levels of organization is also central to a variety of debates in philosophy of science. Yet many difficulties plague the concept of discrete hierarchical levels. In this paper, we show how these difficulties undermine (...)
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  • Beyond reduction and pluralism: Toward an epistemology of explanatory integration in biology.Ingo Brigandt - 2010 - Erkenntnis 73 (3):295-311.
    The paper works towards an account of explanatory integration in biology, using as a case study explanations of the evolutionary origin of novelties-a problem requiring the integration of several biological fields and approaches. In contrast to the idea that fields studying lower level phenomena are always more fundamental in explanations, I argue that the particular combination of disciplines and theoretical approaches needed to address a complex biological problem and which among them is explanatorily more fundamental varies with the problem pursued. (...)
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  • Levels of organization: a deflationary account.Markus I. Eronen - 2015 - Biology and Philosophy 30 (1):39-58.
    The idea of levels of organization plays a central role in the philosophy of the life sciences. In this article, I first examine the explanatory goals that have motivated accounts of levels of organization. I then show that the most state-of-the-art and scientifically plausible account of levels of organization, the account of levels of mechanism proposed by Bechtel and Craver, is fundamentally problematic. Finally, I argue that the explanatory goals can be reached by adopting a deflationary approach, where levels of (...)
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  • Reductive Explanation in the Biological Sciences.Marie I. Kaiser - 2015 - Cham: Springer.
    Back cover: This book develops a philosophical account that reveals the major characteristics that make an explanation in the life sciences reductive and distinguish them from non-reductive explanations. Understanding what reductive explanations are enables one to assess the conditions under which reductive explanations are adequate and thus enhances debates about explanatory reductionism. The account of reductive explanation presented in this book has three major characteristics. First, it emerges from a critical reconstruction of the explanatory practice of the life sciences itself. (...)
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  • Causal Exclusion and Causal Bayes Nets.Alexander Gebharter - 2017 - Philosophy and Phenomenological Research 95 (2):353-375.
    In this paper I reconstruct and evaluate the validity of two versions of causal exclusion arguments within the theory of causal Bayes nets. I argue that supervenience relations formally behave like causal relations. If this is correct, then it turns out that both versions of the exclusion argument are valid when assuming the causal Markov condition and the causal minimality condition. I also investigate some consequences for the recent discussion of causal exclusion arguments in the light of an interventionist theory (...)
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  • Towards a General Theory of Reduction. Part I: Historical and Scientific Setting.C. A. Hooker - 1981 - Dialogue 20 (1):38-59.
    The Three Papers comprising this series, together with my earlier [34] also published in this journal, constitute an attempt to set out the major issues in the theoretical domain of reduction and to develop a general theory of theory reduction. The fourth paper, [34], though published separately from this trio, is integral to the presentation and should be read in conjunction with these papers. Even so, the presentation is limited in scope – roughly, to intertheoretic reduction among empirical theories – (...)
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  • A modified concept of consciousness.Roger W. Sperry - 1969 - Psychological Review 76 (6):532-36.
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  • 11.'Downward Causation'in Hierarchically Organised Biological Systems.Donald T. Campbell - 1974 - In Francisco Jose Ayala & Theodosius Dobzhansky, Studies in the philosophy of biology: reduction and related problems. Berkeley: University of California Press. pp. 179.
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  • No Levels, No Problems: Downward Causation in Neuroscience.Markus I. Eronen - 2013 - Philosophy of Science 80 (5):1042-1052.
    I show that the recent account of levels in neuroscience proposed by Craver and Bechtel is unsatisfactory since it fails to provide a plausible criterion for being at the same level and is incompatible with Craver and Bechtel’s account of downward causation. Furthermore, I argue that no distinct notion of levels is needed for analyzing explanations and causal issues in neuroscience: it is better to rely on more well-defined notions such as composition and scale. One outcome of this is that (...)
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  • Levels, Emergence, and Three Versions of Downward Causation.Claus Emmeche, Simo Koppe & Frederick Stjernfelt - 2000 - In P. B. Andersen, Claus Emmeche, N. O. Finnemann & P. V. Christiansen, Downward Causation. Aarhus, Denmark: University of Aarhus Press. pp. 322-348.
    The idea of a higher level phenomenon having a downward causal influence on a lower level process or entity has taken a variety of forms. In order to discuss the relation between emergence and downward causation, the specific variety of the thesis of downward causation (DC) must be identified. Based on some ontological theses about inter-level relations, types of causation and the possibility of reduction, three versions of DC are distinguished. Of these, the `Strong' form of DC is held to (...)
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  • Explicating Top-­‐Down Causation Using Networks and Dynamics.William Bechtel - 2017 - Philosophy of Science 84 (2):253-274.
    In many fields in the life sciences investigators refer to downward or top-down causal effects. Craver and Bechtel defended the view that such cases should be understood in terms of a constitution relation between levels in a mechanism and causation as solely an intra-level relation. Craver and Bechtel, however, provided insufficient specification as to when entities constitute a higher-level mechanism. In this paper I appeal to graph-theoretic representations of networks that are now widely employed in systems biology and neuroscience to (...)
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  • Beyond reduction: mechanisms, multifield integration and the unity of neuroscience.Carl F. Craver - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36 (2):373-395.
    Philosophers of neuroscience have traditionally described interfield integration using reduction models. Such models describe formal inferential relations between theories at different levels. I argue against reduction and for a mechanistic model of interfield integration. According to the mechanistic model, different fields integrate their research by adding constraints on a multilevel description of a mechanism. Mechanistic integration may occur at a given level or in the effort to build a theory that oscillates among several levels. I develop this alternative model using (...)
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  • The layered model: Metaphysical considerations.Jaegwon Kim - 2002 - Philosophical Explorations 5 (1):2 – 20.
    This paper examines the idea, commonly presupposed but seldom explicitly stated in discussions of certain philosophical problems, that the objects and phenomena of the world are structured in a hierarchy of "levels", from the bottom level of microparticles to the levels of cells and biological organisms and then to the levels of creatures with mentality and social groups of such creatures. Parallel to this "layered model" of the natural world is an ordering of the sciences, with physics as our "basic" (...)
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  • An Outline of General System Theory.Ludwig von Bertalanffy - 1950 - British Journal for the Philosophy of Science 1 (2):134-165.
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  • Parts and theories in compositional biology.Rasmus Grønfeldt Winther - 2006 - Biology and Philosophy 21 (4):471-499.
    I analyze the importance of parts in the style of biological theorizing that I call compositional biology. I do this by investigating various aspects, including partitioning frames and explanatory accounts, of the theoretical perspectives that fall under and are guided by compositional biology. I ground this general examination in a comparative analysis of three different disciplines with their associated compositional theoretical perspectives: comparative morphology, functional morphology, and developmental biology. I glean data for this analysis from canonical textbooks and defend the (...)
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  • The Levels of Selection.Robert N. Brandon - 1982 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1982:315 - 323.
    In this paper Wimsatt's analysis of units of selection is taken as defining the units of selection question. A definition of levels of selection is offered and it is shown that the levels of selection question is quite different from the units of selection question. Some of the relations between units and levels are briefly explored. It is argued that the levels of selection question is the question relevant to explanatory concerns, and it is suggested that it is the question (...)
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  • (2 other versions)Space, time, and Deity: the Gifford lectures at Glasgow 1916-1918.Samuel Alexander - 1920 - New York: Dover Publications.
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  • Rendering Interventionism and Non‐Reductive Physicalism Compatible.Michael Baumgartner - 2013 - Dialectica 67 (1):1-27.
    In recent years, the debate on the problem of causal exclusion has seen an ‘interventionist turn’. Numerous non-reductive physicalists (e.g. Shapiro and Sober 2007) have argued that Woodward's (2003) interventionist theory of causation provides a means to empirically establish the existence of non-reducible mental-to-physical causation. By contrast, Baumgartner (2010) has presented an interventionist exclusion argument showing that interventionism is in fact incompatible with non-reductive physicalism. In response, a number of revised versions of interventionism have been suggested that are compatible with (...)
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  • Order and life.Joseph Needham - 1936 - Cambridge,: M.I.T. Press.
    The nature of biological order.--The deployment of biological order.--The hierarchical continuity of biological order.--Bibliography (p. xvi-xvii).
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  • Mechanism, vitalism and organicism in late nineteenth and twentieth-century biology: the importance of historical context.Garland E. Allen - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36 (2):261-283.
    The term ‘mechanism’ has been used in two quite different ways in the history of biology. Operative, or explanatory mechanism refers to the step-by-step description or explanation of how components in a system interact to yield a particular outcome . Philosophical Mechanism, on the other hand, refers to a broad view of organisms as material entities, functioning in ways similar to machines — that is, carrying out a variety of activities based on known chemical and physical processes. In the early (...)
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  • Concepts as Tools in the Experimental Generation of Knowledge in Cognitive Neuropsychology.Uljana Feest - 2010 - Spontaneous Generations 4 (1):173-190.
    This paper asks (a) how new scientific objects of research are onceptualized at a point in time when little is known about them, and (b) how those conceptualizations, in turn, figure in the process of investigating the phenomena in question. Contrasting my approach with existing notions of concepts and situating it in relation to existing discussions about the epistemology of experimentation, I propose to think of concepts as research tools. I elaborate on the conception of a tool that informs my (...)
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