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Genidentity and Biological Processes

In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press (2018)

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  1. Evolution in Four Dimensions: Genetic, Epigenetic, Behavioral, and Symbolic Variation in the History of Life.Eva Jablonka, Marion J. Lamb & Anna Zeligowski - 2005 - Bradford.
    Ideas about heredity and evolution are undergoing a revolutionary change. New findings in molecular biology challenge the gene-centered version of Darwinian theory according to which adaptation occurs only through natural selection of chance DNA variations. In Evolution in Four Dimensions, Eva Jablonka and Marion Lamb argue that there is more to heredity than genes. They trace four "dimensions" in evolution -- four inheritance systems that play a role in evolution: genetic, epigenetic, behavioral, and symbolic. These systems, they argue, can all (...)
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  • The Predictive Mind.Jakob Hohwy - 2013 - Oxford, GB: Oxford University Press UK.
    A new theory is taking hold in neuroscience. It is the theory that the brain is essentially a hypothesis-testing mechanism, one that attempts to minimise the error of its predictions about the sensory input it receives from the world. It is an attractive theory because powerful theoretical arguments support it, and yet it is at heart stunningly simple. Jakob Hohwy explains and explores this theory from the perspective of cognitive science and philosophy. The key argument throughout The Predictive Mind is (...)
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  • Der Blick von innen: zur transtemporalen Identität bewusstseinsfähiger Wesen.Martine Nida-Rümelin - 2006 - Frankfurt am Main: Suhrkamp.
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  • Quantum processes: a Whiteheadian interpretation of quantum field theory.Frank Hättich - 2004 - Münster: Agenda.
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  • Reconciling Science and Religion: THE DEBATE IN EARLY-TWENTIETH-CENTURY BRITAIN.Peter J. Bowler - 2001 - University of Chicago Press.
    Although much has been written about the vigorous debates over science and religion in the Victorian era, little attention has been paid to their continuing importance in early twentieth-century Britain. Reconciling Science and Religion provides a comprehensive survey of the interplay between British science and religion from the late nineteenth century to World War II. Peter J. Bowler argues that unlike the United States, where a strong fundamentalist opposition to evolutionism developed in the 1920s (most famously expressed in the Scopes (...)
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  • Biological Autonomy: A Philosophical and Theoretical Enquiry.Alvaro Moreno & Matteo Mossio - 2015 - Dordrecht: Springer. Edited by Matteo Mossio.
    Since Darwin, Biology has been framed on the idea of evolution by natural selection, which has profoundly influenced the scientific and philosophical comprehension of biological phenomena and of our place in Nature. This book argues that contemporary biology should progress towards and revolve around an even more fundamental idea, that of autonomy. Biological autonomy describes living organisms as organised systems, which are able to self-produce and self-maintain as integrated entities, to establish their own goals and norms, and to promote the (...)
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  • .Peter van Inwagen - 1988
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  • Getting Causes From Powers.Stephen Mumford & Rani Lill Anjum - 2011 - Oxford, GB: Oxford University Press. Edited by Rani Lill Anjum.
    Causation is everywhere in the world: it features in every science and technology. But how much do we understand it? Mumford and Anjum develop a new theory of causation based on an ontology of real powers or dispositions. They provide the first detailed outline of a thoroughly dispositional approach, and explore its surprising features.
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  • The Music of Life: Biology Beyond Genes.Denis Noble - 2008 - Oxford University Press.
    What is Life? To answer this question, Denis Noble argues that we must look beyond the gene's eye view. For modern 'systems biology' considers life on a variety of levels, as an intricate web of feedback between gene, cell, organ, body, and environment. He shows how it is both a biologically rigorous and richly rewarding way of understanding life.
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  • The Limits of the Self: Immunology and Biological Identity.Thomas Pradeu - 2012 - , US: Oxford University Press.
    The Limits of the Self, will be essential reading for anyone interested in the definition of biological individuality and the understanding of the immune system.
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  • The Major Transitions in Evolution Revisited.Brett Calcott & Kim Sterelny (eds.) - 2011 - MIT Press.
    Drawing on recent advances in evolutionary biology, prominent scholars return to the question posed in a pathbreaking book: how evolution itself evolved.
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  • Evolution – the Extended Synthesis.Massimo Pigliucci & Gerd B. Muller (eds.) - 2010 - MIT Press.
    In the six decades since the publication of Julian Huxley's Evolution: The Modern Synthesis, spectacular empirical advances in the biological sciences have been accompanied by equally significant developments within the core theoretical framework of the discipline. As a result, evolutionary theory today includes concepts and even entire new fields that were not part of the foundational structure of the Modern Synthesis. In this volume, sixteen leading evolutionary biologists and philosophers of science survey the conceptual changes that have emerged since Huxley's (...)
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  • Causation and laws of nature.Max Kistler - 2006 - London: Routledge. Edited by Michael Beaney.
    Causation is important. It is, as Hume said, the cement of the universe, and lies at the heart of our conceptual structure. Causation is one of the most fundamental tools we have for organizing our apprehension of the external world and ourselves. But philosophers' disagreement about the correct interpretation of causation is as limitless as their agreement about its importance. The history of attempts to elucidate the nature of this concept and to situate it with respect to other fundamental concepts (...)
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  • Metametaphysics: New Essays on the Foundations of Ontology.Ryan Wasserman, David Manley & David Chalmers (eds.) - 2009 - Oxford, England: Oxford University Press.
    This volume concerns the status and ambitions of metaphysics as a discipline.
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  • The Philosophical Basis of Biology.John Scott Haldane - 1931 - [London]Hodder & Stoughton.
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  • More Kinds of Being: A Further Study of Individuation, Identity, and the Logic of Sortal Terms.Edward Jonathan Lowe - 2009 - Oxford and West Sussex, England: Wiley-Blackwell.
    Taking into account significant developments in the metaphysical thinking of E. J. Lowe over the past 20 years, _More Kinds of Being:A Further Study of Individuation, Identity, and the Logic of Sortal Terms_ presents a thorough reworking and expansion of the 1989 edition of _Kinds of Being_ Brings many of the original ideas and arguments put forth in _Kinds of Being_ thoroughly up to date in light of new developments Features a thorough reworking and expansion of the earlier work, rather (...)
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  • The Embodied Mind: Cognitive Science and Human Experience.Francisco J. Varela, Evan Thompson & Eleanor Rosch - 1991 - MIT Press.
    The Embodied Mind provides a unique, sophisticated treatment of the spontaneous and reflective dimension of human experience.
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  • Darwinian Populations and Natural Selection.Peter Godfrey-Smith - 2009 - Oxford, GB: Oxford University Press.
    The book presents a new way of understanding Darwinism and evolution by natural selection, combining work in biology, philosophy, and other fields.
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  • Re-engineering philosophy for limited beings: piecewise approximations to reality.William C. Wimsatt - 2007 - Cambridge, Mass.: Harvard University Press.
    This book offers a philosophy for error-prone humans trying to understand messy systems in the real world.
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  • Boundaries of the Mind: The Individual in the Fragile Sciences - Cognition.Robert A. Wilson - 2004 - New York: Cambridge University Press.
    Where does the mind begin and end? Most philosophers and cognitive scientists take the view that the mind is bounded by the skull or skin of the individual. Robert Wilson, in this provocative and challenging 2004 book, provides the foundations for the view that the mind extends beyond the boundary of the individual. The approach adopted offers a unique blend of traditional philosophical analysis, cognitive science, and the history of psychology and the human sciences. The companion volume, Genes and the (...)
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  • Biological Individuality: The Identity and Persistence of Living Entities.Jack Wilson - 1999 - New York: Cambridge University Press.
    What makes a biological entity an individual? Jack Wilson shows that past philosophers have failed to explicate the conditions an entity must satisfy to be a living individual. He explores the reason for this failure and explains why we should limit ourselves to examples involving real organisms rather than thought experiments. This book explores and resolves paradoxes that arise when one applies past notions of individuality to biological examples beyond the conventional range and presents an analysis of identity and persistence. (...)
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  • Action in Perception.Alva Noë - 2004 - MIT Press.
    "Perception is not something that happens to us, or in us," writes Alva Noe. "It is something we do." In Action in Perception, Noe argues that perception and perceptual consciousness depend on capacities for action and thought — that ...
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  • What Functions Explain: Functional Explanation and Self-Reproducing Systems.Peter McLaughlin - 2000 - New York, NY: Cambridge University Press.
    This 2001 book offers an examination of functional explanation as it is used in biology and the social sciences, and focuses on the kinds of philosophical presuppositions that such explanations carry with them. It tackles such questions as: why are some things explained functionally while others are not? What do the functional explanations tell us about how these objects are conceptualized? What do we commit ourselves to when we give and take functional explanations in the life sciences and the social (...)
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  • The Possibility of Metaphysics: Substance, Identity, and Time.Edward Jonathan Lowe - 1998 - Oxford, GB: Clarendon Press.
    Jonathan Lowe argues that metaphysics should be restored to a central position in philosophy, as the most fundamental form of inquiry, whose findings underpin those of all other disciplines. He portrays metaphysics as charting the possibilities of existence, by identifying the categories of being and the relations between them. He sets out his own original metaphysical system, within which he seeks to answer many of the deepest questions in philosophy. 'a very rich book... deserves to be read carefully by anyone (...)
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  • The Four-Category Ontology: A Metaphysical Foundation for Natural Science.Edward Jonathan Lowe - 2006 - Oxford, GB: Clarendon Press.
    E. J. Lowe, a prominent figure in contemporary metaphysics, sets out and defends his theory of what there is. His four-category ontology is a metaphysical system which recognizes four fundamental categories of beings: substantial and non-substantial particulars and substantial and non-substantial universals. Lowe argues that this system has an explanatory power which is unrivalled by more parsimonious theories and that this counts decisively in its favour. He shows that it provides a powerful explanatory framework for a unified account of causation, (...)
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  • The triple helix: gene, organism, and environment.Richard C. Lewontin - 2000 - Cambridge, Mass.: Harvard University Press. Edited by Richard C. Lewontin.
    One of our most brilliant evolutionary biologists, Richard Lewontin has also been a leading critic of those--scientists and non-scientists alike--who would misuse the science to which he has contributed so much. In The Triple Helix, Lewontin the scientist and Lewontin the critic come together to provide a concise, accessible account of what his work has taught him about biology and about its relevance to human affairs. In the process, he exposes some of the common and troubling misconceptions that misdirect and (...)
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  • Consciousness in Action.Susan L. Hurley - 1998 - Cambridge, Mass.: Harvard University Press.
    In this important book, Susan Hurley sheds new light on consciousness by examining its relationships to action from various angles. She assesses the role of agency in the unity of a conscious perspective, and argues that perception and action are more deeply interdependent than we usually assume. A standard view conceives perception as input from world to mind and action as output from mind to world, with the serious business of thought in between. Hurley criticizes this picture, and considers how (...)
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  • Scientific Essentialism.Brian Ellis - 2001 - New York: Cambridge University Press.
    Scientific Essentialism defends the view that the fundamental laws of nature depend on the essential properties of the things on which they are said to operate, and are therefore not independent of them. These laws are not imposed upon the world by God, the forces of nature or anything else, but rather are immanent in the world. Ellis argues that ours is a dynamic world consisting of more or less transient objects which are constantly interacting with each other, and whose (...)
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  • Physical Causation.Phil Dowe - 2000 - New York: Cambridge University Press.
    This book, published in 2000, is a clear account of causation based firmly in contemporary science. Dowe discusses in a systematic way, a positive account of causation: the conserved quantities account of causal processes which he has been developing over the last ten years. The book describes causal processes and interactions in terms of conserved quantities: a causal process is the worldline of an object which possesses a conserved quantity, and a causal interaction involves the exchange of conserved quantities. Further, (...)
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  • The intelligibility of nature: how science makes sense of the world.Peter Dear - 2006 - Chicago: University of Chicago Press.
    Throughout the history of the Western world, science has possessed an extraordinary amount of authority and prestige. And while its pedestal has been jostled by numerous evolutions and revolutions, science has always managed to maintain its stronghold as the knowing enterprise that explains how the natural world works: we treat such legendary scientists as Galileo, Newton, Darwin, and Einstein with admiration and reverence because they offer profound and sustaining insight into the meaning of the universe. In The Intelligibility of Nature (...)
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  • Explaining the brain: mechanisms and the mosaic unity of neuroscience.Carl F. Craver - 2007 - New York : Oxford University Press,: Oxford University Press, Clarendon Press.
    Carl Craver investigates what we are doing when we sue neuroscience to explain what's going on in the brain.
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  • A Combinatorial Theory of Possibility.David Malet Armstrong - 1989 - Cambridge and New York: Cambridge University Press.
    David Armstrong's book is a contribution to the philosophical discussion about possible worlds. Taking Wittgenstein's Tractatus as his point of departure, Professor Armstrong argues that nonactual possibilities and possible worlds are recombinations of actually existing elements, and as such are useful fictions. There is an extended criticism of the alternative-possible-worlds approach championed by the American philosopher David Lewis. This major work will be read with interest by a wide range of philosophers.
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  • The Cognitive Structure of Scientific Revolutions.Hanne Andersen, Peter Barker & Xiang Chen - 2006 - New York: Cambridge University Press. Edited by Peter Barker & Xiang Chen.
    Thomas Kuhn's Structure of Scientific Revolutions became the most widely read book about science in the twentieth century. His terms 'paradigm' and 'scientific revolution' entered everyday speech, but they remain controversial. In the second half of the twentieth century, the new field of cognitive science combined empirical psychology, computer science, and neuroscience. In this book, the theories of concepts developed by cognitive scientists are used to evaluate and extend Kuhn's most influential ideas. Based on case studies of the Copernican revolution, (...)
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  • A future for presentism.Craig Bourne - 2006 - New York: Oxford University Press.
    How can we talk meaningfully about the past if it does not exist to be talked about? What gives time its direction? Is time travel possible? This defence of presentism - the view that only the present exists - makes an original contribution to a fast growing and exciting debate.
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  • Homology in comparative, molecular, and evolutionary developmental biology: The radiation of a concept.Ingo Brigandt - 2003 - Journal of Experimental Zoology (Molecular and Developmental Evolution) 299:9-17.
    The present paper analyzes the use and understanding of the homology concept across different biological disciplines. It is argued that in its history, the homology concept underwent a sort of adaptive radiation. Once it migrated from comparative anatomy into new biological fields, the homology concept changed in accordance with the theoretical aims and interests of these disciplines. The paper gives a case study of the theoretical role that homology plays in comparative and evolutionary biology, in molecular biology, and in evolutionary (...)
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  • Evolutionary Developmental Biology and the Limits of Philosophical Accounts of Mechanistic Explanation.Ingo Brigandt - 2015 - In P.-A. Braillard & C. Malaterre (eds.), Explanation in Biology: An Enquiry into the Diversity of Explanatory Patterns in the Life Sciences. Springer. pp. 135-173.
    Evolutionary developmental biology (evo-devo) is considered a ‘mechanistic science,’ in that it causally explains morphological evolution in terms of changes in developmental mechanisms. Evo-devo is also an interdisciplinary and integrative approach, as its explanations use contributions from many fields and pertain to different levels of organismal organization. Philosophical accounts of mechanistic explanation are currently highly prominent, and have been particularly able to capture the integrative nature of multifield and multilevel explanations. However, I argue that evo-devo demonstrates the need for a (...)
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  • Non-transitive Parthood, Leveled Mereology, and the Representation of Emergent Parts of Processes.Johanna Seibt - 2014 - Grazer Philosophische Studien 91:161-190.
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  • Heraclitus.Daniel W. Graham - 2002 - Internet Encyclopedia of Philosophy.
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  • Are Species Really Individuals?David L. Hull - 1976 - Systematic Zoology 25:174–191.
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  • A Radical Solution to the Species Problem.Michael T. Ghiselin - 1974 - Systematic Zoology 23 (4):536–544.
    Traditionally, species have been treated as classes. In fact they may be considered individuals. The logical term “individual” has been confused with a biological synonym for “organism.” If species are individuals, then: 1) their names are proper, 2) there cannot be instances of them, 3) they do not have defining properties, 4) their constituent organisms are parts, not members. “ Species " may be defined as the most extensive units in the natural economy such that reproductive competition occurs among their (...)
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  • Action in Perception by Alva Noë. [REVIEW]Alva Noë - 2005 - Journal of Philosophy 102 (5):259-272.
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  • Where’s the Good in Teleology?Mark Bedau - 1992 - Philosophy and Phenomenological Research 52 (4):781-806.
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  • The Problem of Perception.Tim Crane & Craig French - 2021 - Stanford Encyclopedia of Philosophy.
    The Problem of Perception is a pervasive and traditional problem about our ordinary conception of perceptual experience. The problem is created by the phenomena of perceptual illusion and hallucination: if these kinds of error are possible, how can perceptual experience be what we ordinarily understand it to be: something that enables direct perception of the world? These possibilities of error challenge the intelligibility of our ordinary conception of perceptual experience; the major theories of experience are responses to this challenge.
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  • The Biological Notion of Individual.Robert A. Wilson & Matthew J. Barker - 2013 - Stanford Encyclopedia of Philosophy.
    Individuals are a prominent part of the biological world. Although biologists and philosophers of biology draw freely on the concept of an individual in articulating both widely accepted and more controversial claims, there has been little explicit work devoted to the biological notion of an individual itself. How should we think about biological individuals? What are the roles that biological individuals play in processes such as natural selection (are genes and groups also units of selection?), speciation (are species individuals?), and (...)
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  • Process Philosophy.Johanna Seibt - 2013 - Stanford Encyclopedia of Philosophy.
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  • Auditory Perception.Casey O'Callaghan - 2014 - Stanford Encyclopedia of Philosophy 2009.
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  • Units and levels of selection.Elisabeth Lloyd - 2008 - Stanford Encyclopedia of Philosophy.
    The theory of evolution by natural selection is, perhaps, the crowning intellectual achievement of the biological sciences. There is, however, considerable debate about which entity or entities are selected and what it is that fits them for that role. This article aims to clarify what is at issue in these debates by identifying four distinct, though often confused, concerns and then identifying how the debates on what constitute the units of selection depend to a significant degree on which of these (...)
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  • Heraclitus.Daniel W. Graham - 2019 - Stanford Encyclopedia of Philosophy.
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  • Natural selection.Robert Brandon - 2008 - Stanford Encyclopedia of Philosophy.
    Darwin's theory of evolution by natural selection provided the first, and only, causal-mechanistic account of the existence of adaptations in nature. As such, it provided the first, and only, scientific alternative to the “argument from design”. That alone would account for its philosophical significance. But the theory also raises other philosophical questions not encountered in the study of the theories of physics. Unfortunately the concept of natural selection is intimately intertwined with the other basic concepts of evolutionary theory—such as the (...)
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  • Truth, Love and Immortality, and Introduction to McTaggart's Philosophy.P. T. Geach - 1979 - Religious Studies 16 (3):362-364.
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