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  1. Aristotle's philosophy of biology: studies in the origins of life science.James G. Lennox - 2000 - New York: Cambridge University Press.
    In addition to being one of the world's most influential philosophers, Aristotle can also be credited with the creation of both the science of biology and the philosophy of biology. He was the first thinker to treat the investigations of the living world as a distinct inquiry with its own special concepts and principles. This book focuses on a seminal event in the history of biology - Aristotle's delineation of a special branch of theoretical knowledge devoted to the systematic investigation (...)
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  • Aristotle’s Philosophy of Biology: Studies in the Origins of Life Science.[author unknown] - 2001 - Tijdschrift Voor Filosofie 63 (4):787-789.
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  • Evolution and the levels of selection.Samir Okasha - 2006 - New York: Oxford University Press.
    Does natural selection act primarily on individual organisms, on groups, on genes, or on whole species? The question of levels of selection - on which biologists and philosophers have long disagreed - is central to evolutionary theory and to the philosophy of biology. Samir Okasha's comprehensive analysis gives a clear account of the philosophical issues at stake in the current debate.
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  • Alternative formulations of multilevel selection.John Damuth & I. Lorraine Heisler - 1988 - Biology and Philosophy 3 (4):407-430.
    Hierarchical expansions of the theory of natural selection exist in two distinct bodies of thought in evolutionary biology, the group selection and the species selection traditions. Both traditions share the point of view that the principles of natural selection apply at levels of biological organization above the level of the individual organism. This leads them both to considermultilevel selection situations, where selection is occurring simultaneously at more than one level. Impeding unification of the theoretical approaches of the multilevel selection traditions (...)
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  • The Problem of Biological Individuality.Ellen Clarke - 2010 - Biological Theory 5 (4):312-325.
    Darwin’s classic ‘Origin of Species’ (Darwin 1859) described forces of selection acting upon individuals, but there remains a great deal of controversy about what exactly the status and definition of a biological individual is. Recently some authors have argued that the individual is dispensable – that an inability to pin it down is not problematic because little rests on it anyway. The aim of this paper is to show that there is a real problem of biological individuality, and an urgent (...)
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  • The Multiple Realizability of Biological Individuals.Ellen Clarke - 2013 - Journal of Philosophy 110 (8):413-435.
    Biological theory demands a clear organism concept, but at present biologists cannot agree on one. They know that counting particular units, and not counting others, allows them to generate explanatory and predictive descriptions of evolutionary processes. Yet they lack a unified theory telling them which units to count. In this paper, I offer a novel account of biological individuality, which reconciles conflicting definitions of ‘organism’ by interpreting them as describing alternative realisers of a common functional role, and then defines individual (...)
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  • From the organism of a body to the body of an organism: occurrence and meaning of the word ‘organism’ from the seventeenth to the nineteenth centuries.Tobias Cheung - 2006 - British Journal for the History of Science 39 (3):319-339.
    This paper retraces the occurrence of the word ‘organism’ in writings of different authors from the seventeenth to the nineteenth centuries. It seeks to clarify chronological and conceptual shifts in the usage and meaning of the word. After earlier uses of the word in medieval sources, the Latin word organismus appeared in 1684 in Stahl's medico-physiological writings. Around 1700 it can be found in French , English , Italian and later also in German . During the eighteenth century the word (...)
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  • The Nature of Selection: Evolutionary Theory in Philosophical Focus.Robert N. Brandon - 1986 - Philosophical Review 95 (4):614.
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  • Causal processes, fitness, and the differential persistence of lineages.Frédéric Bouchard - 2008 - Philosophy of Science 75 (5):560-570.
    Ecological fitness has been suggested to provide a unifying definition of fitness. However, a metric for this notion of fitness was in most cases unavailable except by proxy with differential reproductive success. In this article, I show how differential persistence of lineages can be used as a way to assess ecological fitness. This view is inspired by a better understanding of the evolution of some clonal plants, colonial organisms, and ecosystems. Differential persistence shows the limitation of an ensemblist noncausal understanding (...)
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  • Organizational requirements for multicellular autonomy: insights from a comparative case study.Argyris Arnellos, Alvaro Moreno & Kepa Ruiz-Mirazo - 2014 - Biology and Philosophy 29 (6):851-884.
    In this paper we explore the organizational conditions underlying the emergence of organisms at the multicellular level. More specifically, we shall propose a general theoretical scheme according to which a multicellular organism is an ensemble of cells that effectively regulates its own development through collective mechanisms of control of cell differentiation and cell division processes. This theoretical result derives from the detailed study of the ontogenetic development of three multicellular systems and, in particular, of their corresponding cell-to-cell signaling networks. The (...)
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  • The Uniqueness of the Individual.P. B. Medawar - 1957 - Routledge.
    Originally published in 1957, The Uniqueness of the Individual is a collection of 9 essays published from the ten years preceding publication. The essays deal with some of the central problems of biology. These are among the questions put and answered from the standpoint of modern experimental biology. What is ageing and how is it measured? What theories have been held to account for it, and with what success? Did ageing evolve, and if so how? Is Lamarckism and adequate explanation (...)
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  • Immunity and the Emergence of Individuality.Thomas Pradeu - 2013 - In Frédéric Bouchard & Philippe Huneman (eds.), From Groups to Individuals: Evolution and Emerging Individuality. Cambridge, Massachusetts: MIT Press. pp. 77.
    Since, it has become clear that individuality is not to be considered as a given, but rather as something which needs to be explained. How has individuality emerged through evolution, and how has it subsequently been maintained? In particular, why is it that multicellular organisms appeared and persisted, despite the obvious interest of each cell of favoring its own replication? Several biologists see the immune system as one of the key components for explaining the maintenance of multicellular organisms’ individuality. Indeed, (...)
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  • Darwinian individuals.Peter Godfrey-Smith - 2013 - In Frédéric Bouchard & Philippe Huneman (eds.), From Groups to Individuals: Evolution and Emerging Individuality. Cambridge, Massachusetts: MIT Press.
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  • Philosophy of Biology.Peter Godfrey-Smith - 2013 - Princeton: Princeton University Press.
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  • The spandrels of San Marco and the Panglossian paradigm : a critique of the adaptationist programme.S. J. Gould & R. C. Lewontin - 2014 - In Francisco José Ayala & John C. Avise (eds.), Essential readings in evolutionary biology. Baltimore: The Johns Hopkins University Press.
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  • Philosophy of Biology.Elliott Sober - 1993 - Boulder, Colo.: Routledge.
    Perhaps because of it implications for our understanding of human nature, recent philosophy of biology has seen what might be the most dramatic work in the philosophies of the ?special? sciences. This drama has centered on evolutionary theory, and in the second edition of this textbook, Elliott Sober introduces the reader to the most important issues of these developments. With a rare combination of technical sophistication and clarity of expression, Sober engages both the higher level of theory and the direct (...)
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  • The concept of the organism as an integrated Whole.H. P. Wolvekamp - 1966 - Dialectica 20 (2):196-214.
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  • Unto Others: The Evolution and Psychology of Unselfish Behavior.Paul E. Griffiths - 2002 - Mind 111 (441):178-182.
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  • Unto Others: The Evolution and Psychology of Unselfish Behavior.Elliott Sober & David Sloan Wilson - 1998 - Harvard University Press.
    The authors demonstrate that unselfish behavior is in fact an important feature of both biological and human nature. Their book provides a panoramic view of altruism throughout the animal kingdom--from self-sacrificing parasites to the human capacity for selflessness--even as it explains the evolutionary sense of such behavior.
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  • The nature of selection: evolutionary theory in philosophical focus.Elliott Sober - 1984 - Chicago: University of Chicago Press.
    The Nature of Selection is a straightforward, self-contained introduction to philosophical and biological problems in evolutionary theory. It presents a powerful analysis of the evolutionary concepts of natural selection, fitness, and adaptation and clarifies controversial issues concerning altruism, group selection, and the idea that organisms are survival machines built for the good of the genes that inhabit them. "Sober's is the answering philosophical voice, the voice of a first-rate philosopher and a knowledgeable student of contemporary evolutionary theory. His book merits (...)
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  • Philosophy of Biology.Elliott Sober - 1993 - Boulder, Colo.: Westview Press.
    Perhaps because of it implications for our understanding of human nature, recent philosophy of biology has seen what might be the most dramatic work in the philosophies of the ”special” sciences. This drama has centered on evolutionary theory, and in the second edition of this textbook, Elliott Sober introduces the reader to the most important issues of these developments. With a rare combination of technical sophistication and clarity of expression, Sober engages both the higher level of theory and the direct (...)
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  • Problems of multi-species organisms: endosymbionts to holobionts.David C. Queller & Joan E. Strassmann - 2016 - Biology and Philosophy 31 (6):855-873.
    The organism is one of the fundamental concepts of biology and has been at the center of many discussions about biological individuality, yet what exactly it is can be confusing. The definition that we find generally useful is that an organism is a unit in which all the subunits have evolved to be highly cooperative, with very little conflict. We focus on how often organisms evolve from two or more formerly independent organisms. Two canonical transitions of this type—replicators clustered in (...)
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  • The self model and the conception of biological identity in immunology.Thomas Pradeu & Edgardo D. Carosella - 2006 - Biology and Philosophy 21 (2):235-252.
    The self/non-self model, first proposed by F.M. Burnet, has dominated immunology for 60 years now. According to this model, any foreign element will trigger an immune reaction in an organism, whereas endogenous elements will not, in normal circumstances, induce an immune reaction. In this paper we show that the self/non-self model is no longer an appropriate explanation of experimental data in immunology, and that this inadequacy may be rooted in an excessively strong metaphysical conception of biological identity. We suggest that (...)
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  • The many faces of biological individuality.Thomas Pradeu - 2016 - Biology and Philosophy 31 (6):761-773.
    Biological individuality is a major topic of discussion in biology and philosophy of biology. Recently, several objections have been raised against traditional accounts of biological individuality, including the objections of monism, theory-centrism, ahistoricity, disciplinary isolationism, and the multiplication of conceptual uncertainties. In this introduction, I will examine the current philosophical landscape about biological individuality, and show how the contributions gathered in this special issue address these five objections. Overall, the aim of this issue is to offer a more diverse, unifying, (...)
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  • Animal Development, an Open-Ended Segment of Life.Alessandro Minelli - 2011 - Biological Theory 6 (1):4-15.
    No comprehensive theory of development is available yet. Traditionally, we regard the development of animals as a sequence of changes through which an adult multicellular animal is produced, starting from a single cell which is usually a fertilized egg, through increasingly complex stages. However, many phenomena that would not qualify as developmental according to these criteria would nevertheless qualify as developmental in that they imply nontrivial (e.g., non degenerative) changes of form, and/or substantial changes in gene expression. A broad, comparative (...)
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  • On guinea pigs, dogs and men: anaphylaxis and the study of biological individuality, 1902–1939.Ilana Löwy - 2003 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 34 (3):399-423.
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  • On guinea pigs, dogs and men: Anaphylaxis and the study of biological individuality, 1902-1939.Ilana Löwy - 2003 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 34 (3):399-423.
    In 1910, Charles Richet suggested that studying individual variations in anaphylactic responses might both open a way to experimental investigation of the biological basis of individuality and help unify the immunological and physiological approaches to biological phenomena. The very opposite would happen however. In the next two decades, physiologists and immunologists interested in anaphylaxis and allergy experienced more and more difficulties in communicating. This divergence between the physiopathological and immunological approaches derived from discrepancies between the experimental systems used by each (...)
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  • Varieties of Living Things: Life at the Intersection of Lineage and Metabolism.John Dupré & Maureen A. O'Malley - 2009 - Philosophy, Theory, and Practice in Biology 1 (20130604).
    We address three fundamental questions: What does it mean for an entity to be living? What is the role of inter-organismic collaboration in evolution? What is a biological individual? Our central argument is that life arises when lineage-forming entities collaborate in metabolism. By conceiving of metabolism as a collaborative process performed by functional wholes, which are associations of a variety of lineage-forming entities, we avoid the standard tension between reproduction and metabolism in discussions of life – a tension particularly evident (...)
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  • Naturalising purpose: From comparative anatomy to the 'adventure of reason'.Philippe Huneman - 2006 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 37 (4):649-674.
    Kant’s analysis of the concept of natural purpose in the Critique of judgment captured several features of organisms that he argued warranted making them the objects of a special field of study, in need of a special regulative teleological principle. By showing that organisms have to be conceived as self-organizing wholes, epigenetically built according to the idea of a whole that we must presuppose, Kant accounted for three features of organisms conflated in the biological sciences of the period: adaptation, functionality (...)
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  • Naturalising purpose: From comparative anatomy to the ‘adventure of reason’.Philippe Huneman - 2006 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 37 (4):649-674.
    Kant’s analysis of the concept of natural purpose in the Critique of judgment captured several features of organisms that he argued warranted making them the objects of a special field of study, in need of a special regulative teleological principle. By showing that organisms have to be conceived as self-organizing wholes, epigenetically built according to the idea of a whole that we must presuppose, Kant accounted for three features of organisms conflated in the biological sciences of the period: adaptation, functionality (...)
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  • Individuality as a Theoretical Scheme. II. About the Weak Individuality of Organisms and Ecosystems.Philippe Huneman - 2014 - Biological Theory 9 (4):374-381.
    Following a previous elaboration of the concept of weak individuality and some examples of its instances in ecology and biology, the article focuses on general features of the concept, arguing that in any ontological field individuals are understood on the basis of our knowledge of interactions, through the application of these general formulas for extracting individuals from interactions. Then, the specificities of the individuality in the sense of this weak concept are examined in ecology; I conclude by addressing the differences (...)
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  • Individuality as a Theoretical Scheme. I. Formal and Material Concepts of Individuality.Philippe Huneman - 2014 - Biological Theory 9 (4):361-373.
    Biological individuals are usually defined by evolutionists through a reference to natural selection. This article looks for a concept of individuality that would hold at the same time for organisms and for communities or ecosystems, the latter being unaffected by natural selection. In the wake of Simon’s notion of “quasi-independence,” I elaborate a concept of “weak individuality” defined by probabilistic connections between sub-entities, read off our knowledge of their interactions. This formal scheme of connections allows one to infer what are (...)
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  • A matter of individuality.David L. Hull - 1978 - Philosophy of Science 45 (3):335-360.
    Biological species have been treated traditionally as spatiotemporally unrestricted classes. If they are to perform the function which they do in the evolutionary process, they must be spatiotemporally localized individuals, historical entities. Reinterpreting biological species as historical entities solves several important anomalies in biology, in philosophy of biology, and within philosophy itself. It also has important implications for any attempt to present an "evolutionary" analysis of science and for sciences such as anthropology which are devoted to the study of single (...)
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  • Development, culture, and the units of inheritance.James Griesemer - 2000 - Philosophy of Science 67 (3):368.
    Developmental systems theory (DST) expands the unit of replication from genes to whole systems of developmental resources, which DST interprets in terms of cycling developmental processes. Expansion seems required by DST's argument against privileging genes in evolutionary and developmental explanations of organic traits. DST and the expanded replicator brook no distinction between biological and cultural evolution. However, by endorsing a single expanded unit of inheritance and leaving the classical molecular notion of gene intact, DST achieves only a nominal reunification of (...)
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  • Discovering Cell Mechanisms: The Creation of Modern Cell Biology.William Bechtel - 2005 - Cambridge University Press.
    Between 1940 and 1970 pioneers in the new field of cell biology discovered the operative parts of cells and their contributions to cell life. They offered mechanistic accounts that explained cellular phenomena by identifying the relevant parts of cells, the biochemical operations they performed, and the way in which these parts and operations were organised to accomplish important functions. Cell biology was a revolutionary science but in this book it also provides fuel for yet another revolution, one that focuses on (...)
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  • The Immune Self: Theory or Metaphor?Alfred I. Tauber - 1994 - Cambridge University Press.
    This is one of the first books in a new series that will publish the very best work in the philosophy of biology. The series will be non-sectarian in character, will extend across the broadest range of topics, and will be genuinely interdisciplinary. The Immune Self is a critical study of immunology from its origins at the end of the nineteenth century to its contemporary formulation. The book offers the first extended philosophical critique of immunology, in which the function of (...)
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  • Individuals Across The Sciences.Thomas Pradeu & Alexandre Guay (eds.) - 2016 - New York, État de New York, États-Unis: Oxford University Press.
    What are individuals? How can they be identified? These are crucial questions for philosophers and scientists alike. Criteria of individuality seem to differ markedly between metaphysics and the empirical sciences - and this might well explain why no work has hitherto attempted to relate the contributions of metaphysics, physics and biology on this question. This timely volume brings together various strands of research into 'individuality', examining how different sciences handle the issue, and reflecting on how this scientific work relates to (...)
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  • Critique of Judgement.Immanuel Kant - 2005 - New York: Oxford University Press UK. Edited by Nicholas Walker.
    'beauty has purport and significance only for human beings, for beings at once animal and rational' In the Critique of Judgement Kant offers a penetrating analysis of our experience of the beautiful and the sublime, discussing the objectivity of taste, aesthetic disinterestedness, the relation of art and nature, the role of imagination, genius and originality, the limits of representation and the connection between morality and the aesthetic. He also investigates the validity of our judgements concerning the apparent purposiveness of nature (...)
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  • Discovering the Individual: A Fascinating Journey to New Frontiers of Immunology and Genetics.Jean Hamburger - 1978 - W. W. Norton.
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  • Tending Adam's Garden: Evolving the Cognitive Immune Self.Irun R. Cohen - 2004 - Academic Press.
    Tending Adam's Garden describes and explains the way in which our immune system works from a novel perspective. The book uses metaphors and examples to bring the immune system to life and explores the fundamental miracle of nature. Written in plain language for a broad audience, this book encompasses much more than just immunology, exploring more fundamental matters such as causality, information, energy, evolution, cognition and individuality, as well as the strategy of the immune system and its role in health (...)
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  • The Origins of Order: Self Organization and Selection in Evolution.Stuart A. Kauffman - 1993 - Oxford University Press.
    Stuart Kauffman here presents a brilliant new paradigm for evolutionary biology, one that extends the basic concepts of Darwinian evolution to accommodate recent findings and perspectives from the fields of biology, physics, chemistry and mathematics. The book drives to the heart of the exciting debate on the origins of life and maintenance of order in complex biological systems. It focuses on the concept of self-organization: the spontaneous emergence of order widely observed throughout nature. Kauffman here argues that self-organization plays an (...)
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  • An Introduction to the Study of Experimental Medicine.Claude Bernard, Henry Copley Greene & Lawrence Joseph Henderson - 1957 - Courier Corporation.
    The basic principles of scientific research from the great French physiologist whose contributions in the 19th century included the discovery of vasomotor nerves; nature of curare and other poisons in human body; more.
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  • The Immune Self: Theory or Metaphor?Alfred I. Tauber - 1994 - Cambridge University Press.
    This is one of the first books in a new series that will publish the very best work in the philosophy of biology. The series will be non-sectarian in character, will extend across the broadest range of topics, and will be genuinely interdisciplinary. The Immune Self is a critical study of immunology from its origins at the end of the nineteenth century to its contemporary formulation. The book offers the first extended philosophical critique of immunology, in which the function of (...)
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  • Leibniz: le vivant et l'organisme.François Duchesneau - 2010 - Vrin.
    Les notions relatives au vivant jouent un role central dans l'economie interne du systeme de la nature selon Leibniz. Elles ont aussi influe sur les theories qui ont ponctue le developpement des sciences de la vie. Le dessein de cet ouvrage est de traiter de ce double objet. Comment Leibniz dessine-t-il le profil d'une science des vivants suivant un modele en partie inspire de Malpighi? Comment la theorie leibnizienne de la substance influe-t-elle sur la determination du concept de vivant comme (...)
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  • The Music of Life: Biology Beyond the Genome.Denis Noble - 2006 - Oxford University Press.
    What is Life? This is the question asked by Denis Noble in this very personal and at times deeply lyrical book. Noble is a renowned physiologist and systems biologist, and he argues that the genome is not life itself: to understand what life is, we must view it at a variety of different levels, all interacting with each other in a complex web. It is that emergent web, full of feedback between levels, from the gene to the wider environment, that (...)
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  • The Limits of the Self: Immunology and Biological Identity.Thomas Pradeu - 2012 - , US: Oxford University Press.
    The Limits of the Self, will be essential reading for anyone interested in the definition of biological individuality and the understanding of the immune system.
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  • Darwinian Populations and Natural Selection.Peter Godfrey-Smith - 2009 - Oxford, GB: Oxford University Press.
    The book presents a new way of understanding Darwinism and evolution by natural selection, combining work in biology, philosophy, and other fields.
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  • Genes and the Agents of Life: The Individual in the Fragile Sciences Biology.Robert A. Wilson - 2005 - New York, NY, USA: Cambridge University Press.
    Genes and the Agents of Life undertakes to rethink the place of the individual in the biological sciences, drawing parallels with the cognitive and social sciences. Genes, organisms, and species are all agents of life but how are each of these conceptualized within genetics, developmental biology, evolutionary biology, and systematics? The 2005 book includes highly accessible discussions of genetic encoding, species and natural kinds, and pluralism above the levels of selection, drawing on work from across the biological sciences. The book (...)
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  • Biological Individuality: The Identity and Persistence of Living Entities.Jack Wilson - 1999 - New York: Cambridge University Press.
    What makes a biological entity an individual? Jack Wilson shows that past philosophers have failed to explicate the conditions an entity must satisfy to be a living individual. He explores the reason for this failure and explains why we should limit ourselves to examples involving real organisms rather than thought experiments. This book explores and resolves paradoxes that arise when one applies past notions of individuality to biological examples beyond the conventional range and presents an analysis of identity and persistence. (...)
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  • The triple helix: gene, organism, and environment.Richard C. Lewontin - 2000 - Cambridge, Mass.: Harvard University Press. Edited by Richard C. Lewontin.
    One of our most brilliant evolutionary biologists, Richard Lewontin has also been a leading critic of those--scientists and non-scientists alike--who would misuse the science to which he has contributed so much. In The Triple Helix, Lewontin the scientist and Lewontin the critic come together to provide a concise, accessible account of what his work has taught him about biology and about its relevance to human affairs. In the process, he exposes some of the common and troubling misconceptions that misdirect and (...)
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