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  1. How Are Biology Concepts Used and Transformed?Ingo Brigandt - 2019 - In Kostas Kampourakis & Tobias Uller (eds.), Philosophy of Science for Biologists. New York, NY: Cambridge University Press. pp. 79–101.
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  • Hybrid Deterministic Views About Genes in Biology Textbooks: A Key Problem in Genetics Teaching.Vanessa Carvalho dos Santos, Leyla Mariane Joaquim & Charbel Niño El-Hani - 2012 - Science & Education 21 (4):543-578.
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  • É legítimo explicar em termos teleológicos na biologia?Ricardo Santos do Carmo, Nei Freitas Nunes-Neto & Charbel Niño El-Hani - 2012 - Revista da Biologia 9 (2):28-34.
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  • Toolbox murders: putting genes in their epigenetic and ecological contexts: P. Griffiths and K. Stotz: Genetics and philosophy: an introduction. [REVIEW]Thomas Pradeu - 2016 - Biology and Philosophy 31 (1):125-142.
    Griffiths and Stotz’s Genetics and Philosophy: An Introduction offers a very good overview of scientific and philosophical issues raised by present-day genetics. Examining, in particular, the questions of how a “gene” should be defined and what a gene does from a causal point of view, the authors explore the different domains of the life sciences in which genetics has come to play a decisive role, from Mendelian genetics to molecular genetics, behavioural genetics, and evolution. In this review, I highlight what (...)
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  • Raphael Falk, Genetic Analysis: A History of Genetic Thinking.Robert Meunier - 2012 - Prolegomena 11 (1):109-114.
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  • A genética em transformação: crise e revisão do conceito de gene.Leyla Mariane Joaquim & Charbel Niño El-Hani - 2010 - Scientiae Studia 8 (1):93-128.
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  • Are genes units of inheritance?Thomas Fogle - 1990 - Biology and Philosophy 5 (3):349-371.
    Definitions of the term gene typically superimpose molecular genetics onto Mendelism. What emerges are persistent attempts to regard the gene as a unit of structure and/or function, language that creates multiple meanings for the term and fails to acknowledge the diversity of gene architecture. I argue that coherence at the molecular level requires abandonment of the classical unit concept and recognition that a gene is constructed from an assemblage of domains. Hence, a domain set (1) conforms more closely to empirical (...)
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  • Comments on the precarious relationship between history and philosophy of science.Richard M. Burian - 2002 - Perspectives on Science 10 (4):398-407.
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  • In Memoriam: Raphael Falk, 1929–2019.Sahotra Sarkar - 2021 - Biological Theory 16 (1):1-4.
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  • (1 other version)On the nature of the gene , Creating a physical biology: The three-man paper and early molecular biology). [REVIEW]Raphael Falk - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):623-625.
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  • Emotions as natural and normative kinds.Paul E. Griffiths - 2004 - Philosophy of Science 71 (5):901-911.
    In earlier work I have claimed that emotion and some emotions are not `natural kinds'. Here I clarify what I mean by `natural kind', suggest a new and more accurate term, and discuss the objection that emotion and emotions are not descriptive categories at all, but fundamentally normative categories.
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  • The Allusion of the Gene: Misunderstandings of the Concepts Heredity and Gene.Raphael Falk - 2014 - Science & Education 23 (2):273-284.
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  • Biological information.Peter Godfrey-Smith & Kim Sterelny - 2012 - In Ed Zalta (ed.), Stanford Encyclopedia of Philosophy. Stanford Encyclopedia of Philosophy.
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  • How Theories Became Knowledge: Morgan's Chromosome Theory of Heredity in America and Britain. [REVIEW]Stephen G. Brush - 2002 - Journal of the History of Biology 35 (3):471-535.
    T. H. Morgan, A. H. Sturtevant, H. J. Muller and C. B. Bridges published their comprehensive treatise "The Mechanism of Mendelian Heredity" in 1915. By 1920 Morgan 's "Chromosome Theory of Heredity" was generally accepted by geneticists in the United States, and by British geneticists by 1925. By 1930 it had been incorporated into most general biology, botany, and zoology textbooks as established knowledge. In this paper, I examine the reasons why it was accepted as part of a series of (...)
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  • Experimental philosophy of science.Paul E. Griffiths & Karola Stotz - 2008 - Philosophy Compass 3 (3):507–521.
    Experimental philosophy of science gathers empirical data on how key scientific concepts are understood by particular scientific communities. In this paper we briefly describe two recent studies in experimental philosophy of biology, one investigating the concept of the gene, the other the concept of innateness. The use of experimental methods reveals facts about these concepts that would not be accessible using the traditional method of intuitions about possible cases. It also contributes to the study of conceptual change in science, which (...)
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  • Panagiotis V. Kokkotas, Katerina S. Malamitsa and Aikaterini A. Rizaki : Adapting Historical Knowledge Production to the Classroom. [REVIEW]Charbel N. El-Hani & Nei F. Nunes-Neto - 2012 - Science & Education 21 (9):1357-1373.
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  • (1 other version)How biologists conceptualize genes: an empirical study.Karola Stotz, Paul E. Griffiths & Rob Knight - 2004 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 35 (4):647-673.
    Philosophers and historians of biology have argued that genes are conceptualized differently in different fields of biology and that these differences influence both the conduct of research and the interpretation of research by audiences outside the field in which the research was conducted. In this paper we report the results of a questionnaire study of how genes are conceptualized by biological scientists at the University of Sydney, Australia. The results provide tentative support for some hypotheses about conceptual differences between different (...)
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  • International Handbook of Research in History, Philosophy and Science Teaching.Michael R. Matthews (ed.) - 2014 - Springer.
    This inaugural handbook documents the distinctive research field that utilizes history and philosophy in investigation of theoretical, curricular and pedagogical issues in the teaching of science and mathematics. It is contributed to by 130 researchers from 30 countries; it provides a logically structured, fully referenced guide to the ways in which science and mathematics education is, informed by the history and philosophy of these disciplines, as well as by the philosophy of education more generally. The first handbook to cover the (...)
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  • Gene.Paul E. Griffiths & Karola Stotz - 2007 - In David L. Hull & Michael Ruse (eds.), The Cambridge Companion to the Philosophy of Biology. New York: Cambridge University Press.
    The historian Raphael Falk has described the gene as a ‘concept in tension’ (Falk 2000) – an idea pulled this way and that by the differing demands of different kinds of biological work. Several authors have suggested that in the light of contemporary molecular biology ‘gene’ is no more than a handy term which acquires a specific meaning only in a specific scientific context in which it occurs. Hence the best way to answer the question ‘what is a gene’, and (...)
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  • T.h. Morgan, neither an epistemological empiricist nor a “methodological” empiricist.Marga Vicedo - 1990 - Biology and Philosophy 5 (3):293-311.
    T. H. Morgan (1866–1945), the founder of the Drosophila research group in genetics that established the chromosome theory of Mendelian inheritance, has been described as a radical empiricist in the historical literature. His empiricism, furthermore, is supposed to have prejudiced him against certain scientific conclusions. This paper aims to show two things: first, that the sense in which the term empiricism has been used by scholars is too weak to be illuminating. It is necessary to distinguish between empiricism as an (...)
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  • The complexity of the gene and the precision of CRISPR : What is the gene that is being edited?Esha Shah, David Ludwig & Phil Macnaghten - 2021 - Elementa: Science of Anthropocene 9 (1):00072.
    The rapid development of CRISPR-based gene editing has been accompanied by a polarized governance debate about the status of CRISPR-edited crops as genetically modified organisms. This article argues that the polarization around the governance of gene editing partly reflects a failure of public engagement with the current state of research in genomics and postgenomics. CRISPR-based gene-editing technology has become embedded in a narrow narrative about the ease and precision of the technique that presents the gene as a stable object under (...)
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  • (1 other version)A Theory of Conceptual Advance: Explaining Conceptual Change in Evolutionary, Molecular, and Evolutionary Developmental Biology.Ingo Brigandt - 2006 - Dissertation, University of Pittsburgh
    The theory of concepts advanced in the dissertation aims at accounting for a) how a concept makes successful practice possible, and b) how a scientific concept can be subject to rational change in the course of history. Traditional accounts in the philosophy of science have usually studied concepts in terms only of their reference; their concern is to establish a stability of reference in order to address the incommensurability problem. My discussion, in contrast, suggests that each scientific concept consists of (...)
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  • Mendel in the Modern Classroom.Mike U. Smith & Niklas M. Gericke - 2015 - Science & Education 24 (1-2):151-172.
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  • How to Understand the Gene in the Twenty-First Century?Lia Midori Nascimento Meyer, Gilberto Cafezeiro Bomfim & Charbel Niño El-Hani - 2013 - Science & Education 22 (2):345-374.
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  • What is a gene?—Revisited.Raphael Falk - 2010 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 41 (4):396-406.
    The dialectic discourse of the ‘gene’ as the unit of heredity deduced from the phenotype, whether an intervening variable or a hypothetical construct, appeared to be settled with the presentation of the molecular model of DNA: the gene was reduced to a sequence of DNA that is transcribed into RNA that is translated into a polypeptide; the polypeptides may fold into proteins that are involved in cellular metabolism and structure, and hence function. This path turned out to be more bewildering (...)
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  • William Bateson and the chromosome theory of heredity: a reappraisal.Alan R. Rushton - 2014 - British Journal for the History of Science 47 (1):147-171.
    William Bateson vigorously objected to the assumptions within the chromosome theory of heredity proposed by T. H. Morgan because he perceived inadequate experimental data that could substantiate the theory. Those objections were largely resolved by 1921, and Bateson reluctantly accepted the basic assumption that chromosomes carried the genetic factors from one generation to the next. Bateson's own research at that time on developmental genetics seemed out of touch with the general tone of the genetics field, and the chromosome theory did (...)
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  • 2001 and all that: A tale of a third science.Karola Stotz - unknown
    The paper describes the change from molecular genetics to postgenomic biology. It focuses on phenomena in the regulation of gene expression that provide a break with the central dogma, according to which sequence specificity for a gene product must be template derived. In its place we find what is called here ‘constitutive molecular epigenesis’. Its three classes of phenomena, which I call sequence ‘activation’, ‘selection’ and ‘creation’, are exemplified by processes such as transcriptional activation, alternative cis- and trans-splicing, and RNA (...)
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  • Psa 2018.Philsci-Archive -Preprint Volume- - unknown
    These preprints were automatically compiled into a PDF from the collection of papers deposited in PhilSci-Archive in conjunction with the PSA 2018.
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  • Philosophy of Molecular Biology.Ingo Brigandt - 2018 - eLS: Encyclopedia of Life Sciences.
    Ongoing empirical discoveries in molecular biology have generated novel conceptual challenges and perspectives. Philosophers of biology have reacted to these trends when investigating the practice of molecular biology and contributed to scientific debates on methodological and conceptual matters. This article reviews some major philosophical issues in molecular biology. First, philosophical accounts of mechanistic explanation yield a notion of explanation in the context of molecular biology that does not have to rely on laws of nature and comports well with molecular discovery. (...)
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  • Genes in the postgenomic era.Paul E. Griffiths & Karola Stotz - 2006 - Theoretical Medicine and Bioethics 27 (6):499-521.
    We outline three very different concepts of the gene—instrumental, nominal, and postgenomic. The instrumental gene has a critical role in the construction and interpretation of experiments in which the relationship between genotype and phenotype is explored via hybridization between organisms or directly between nucleic acid molecules. It also plays an important theoretical role in the foundations of disciplines such as quantitative genetics and population genetics. The nominal gene is a critical practical tool, allowing stable communication between bioscientists in a wide (...)
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  • Individuating Genes as Types or Individuals: Philosophical Implications on Individuality, Kinds, and Gene Concepts.Ruey-Lin Chen - unknown
    “What is a gene?” is an important philosophical question that has been asked over and over. This paper approaches this question by understanding it as the individuation problem of genes, because it implies the problem of identifying genes and identifying a gene presupposes individuating the gene. I argue that there are at least two levels of the individuation of genes. The transgenic technique can individuate “a gene” as an individual while the technique of gene mapping in classical genetics can only (...)
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  • The Evolutionary Gene and the Extended Evolutionary Synthesis.Qiaoying Lu & Pierrick Bourrat - 2017 - British Journal for the Philosophy of Science 69 (3):775-800.
    Advocates of an ‘extended evolutionary synthesis’ have claimed that standard evolutionary theory fails to accommodate epigenetic inheritance. The opponents of the extended synthesis argue that the evidence for epigenetic inheritance causing adaptive evolution in nature is insufficient. We suggest that the ambiguity surrounding the conception of the gene represents a background semantic issue in the debate. Starting from Haig’s gene-selectionist framework and Griffiths and Neumann-Held’s notion of the evolutionary gene, we define senses of ‘gene’, ‘environment’, and ‘phenotype’ in a way (...)
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  • From humanized mice to human disease: guiding extrapolation from model to target.Monika Piotrowska - 2013 - Biology and Philosophy 28 (3):439-455.
    Extrapolation from a well-understood base population to a less-understood target population can fail if the base and target populations are not sufficiently similar. Differences between laboratory mice and humans, for example, can hinder extrapolation in medical research. Mice that carry a partial or complete human physiological system, known as humanized mice, are supposed to make extrapolation more reliable by simulating a variety of human diseases. But what justifies our belief that these mice are similar enough to their human counterparts to (...)
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  • Linkage: From Particulate to Interactive Genetics. [REVIEW]Raphael Falk - 2003 - Journal of the History of Biology 36 (1):87 - 117.
    Genetics was established on a strict particulate conception of heredity. Genetic linkage, the deviation from independent segregation of Mendelian factors, was conceived as a function of the material allocation of the factors to the chromosomes, rather than to the multiple effects (pleiotropy) of discrete factors. Although linkage maps were abstractions they provided strong support for the chromosomal theory of inheritance. Direct Cytogenetic evidence was scarce until X-ray induced major chromosomal rearrangements allowed direct correlation of genetic and cytological rearrangements. Only with (...)
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  • Gene.Hans-Jörg Rheinberger - 2008 - Stanford Encyclopedia of Philosophy.
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  • (1 other version)The Chromosome Theory of Mendelian Inheritance: Explanation and Realism in Theory Construction.Marga Vicedo - 1990 - PSA Proceedings of the Biennial Meeting of the Philosophy of Science Association 1990 (1):179-191.
    Cytogenetics was born of the confluence of two so-far independent fields: cytological studies and breeding studies, which merged through the identification of genes with chromosomes. In this paper I argue that genes were introduced as functional entities. Functional explanations are presented here as a subclass of inferences to the best explanation and I argue that abductive arguments do not offer conclusive proof for the existence of the entities postulated through them. However, functional explanations usually follow a scheme laid out by (...)
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  • Ni cabalmente clásico, ni completamente molecular: un análisis del concepto de gen en la genética del comportamiento.Nahuel Pallitto & Guillermo Folguera - 2017 - Scientiae Studia 15 (2):439.
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  • The Layers of Chemical Language, I: Constitution of Bodies v. Structure of Matter.M. G. Kim - 1992 - History of Science 30 (1):69-96.
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  • The Epistemic Goal of a Concept: Accounting for the Rationality of Semantic Change and Variation.Ingo Brigandt - 2010 - Synthese 177 (1):19-40.
    The discussion presents a framework of concepts that is intended to account for the rationality of semantic change and variation, suggesting that each scientific concept consists of three components of content: 1) reference, 2) inferential role, and 3) the epistemic goal pursued with the concept’s use. I argue that in the course of history a concept can change in any of these components, and that change in the concept’s inferential role and reference can be accounted for as being rational relative (...)
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  • A semiotic analysis of the genetic information system.Claus Emmeche - 2006 - Semiotica 2006 (160):1-68.
    Terms loaded with informational connotations are often employed to refer to genes and their dynamics. Indeed, genes are usually perceived by biologists as basically ‘the carriers of hereditary information.’ Nevertheless, a number of researchers consider such talk as inadequate and ‘just metaphorical,’ thus expressing a skepticism about the use of the term ‘information’ and its derivatives in biology as a natural science. First, because the meaning of that term in biology is not as precise as it is, for instance, in (...)
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  • The Role of Information in Evolutionary Biology.Thomas E. Dickins - 2023 - Acta Biotheoretica 71 (3).
    The Modern Synthesis has received criticism for its purported gene-centrism. That criticism relies on a concept of the gene as a unit of instructional information. In this paper I discuss information concepts and endorse one, developed from Floridi, that sees information as a functional relationship between data and context. I use this concept to inspect developmental criticisms of the Modern Synthesis and argue that the instructional gene arose as an idealization practice when evolutionary biologists made comment on development. However, a (...)
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  • Conceptual Variation or Incoherence? Textbook Discourse on Genes in Six Countries.Niklas M. Gericke, Mariana Hagberg, Vanessa Carvalho dos Santos, Leyla Mariane Joaquim & Charbel N. El-Hani - 2014 - Science & Education 23 (2):381-416.
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  • Molecular Epigenesis, Molecular Pleiotropy, and Molecular Gene Definitions.Richard Burian - 2004 - History and Philosophy of the Life Sciences 26 (1):59 - 80.
    Recent work on gene concepts has been influenced by recognition of the extent to which RNA transcripts from a given DNA sequence yield different products in different cellular environments. These transcripts are altered in many ways and yield many products based, somehow, on the sequence of nucleotides in the DNA. I focus on alternative splicing of RNA transcripts (which often yields distinct proteins from the same raw transcript) and on 'gene sharing', in which a single gene produces distinct proteins with (...)
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  • Gene names as proper names of individuals: An assessment.Thomas A. C. Reydon - 2009 - British Journal for the Philosophy of Science 60 (2):409-432.
    According to a recent suggestion, the names of gene taxa should be conceived of as referring to individuals with concrete genes as their parts, just as the names of biological species are often understood as denoting individuals with organisms as their parts. Although prima facie this suggestion might advance the debate on gene concepts in a similar way as the species-are-individuals thesis advanced the debate on species concepts, I argue that the principal arguments in support of the gene-individuality thesis are (...)
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  • History of Virus Research in the Twentieth Century: The Problem of Conceptual Continuity.Ton van Helvoort - 1994 - History of Science 32 (2):185-235.
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  • Did you just say what I think you said? Talking about genes, identity and information.Adam Henschke - 2010 - Identity in the Information Society 3 (3):435-456.
    Genetic information is becoming increasingly used in modern life, extending beyond medicine to familial history, forensics and more. Following this expansion of use, the effect of genetic information on people’s identity and ultimately people’s quality of life is being explored in a host of different disciplines. While a multidisciplinary approach is commendable and necessary, there is the potential for the multidisciplinarity to produce conceptual misconnection. That is, while experts in one field may understand their use of a term like ‘gene’, (...)
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  • Small RNA research and the scientific repertoire: a tale about biochemistry and genetics, crops and worms, development and disease.Sophie Juliane Veigl - 2021 - History and Philosophy of the Life Sciences 43 (1):1-25.
    The discovery of RNA interference in 1998 has made a lasting impact on biological research. Identifying the regulatory role of small RNAs changed the modes of molecular biological inquiry as well as biologists' understanding of genetic regulation. This article examines the early years of small RNA biology's success story. I query which factors had to come together so that small RNA research came into life in the blink of an eye. I primarily look at scientific repertoires as facilitators of rapid (...)
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  • Between beanbag genetics and natural selection.Raphael Falk - 1990 - Biology and Philosophy 5 (3):313-325.
    The encounter between the Darwinian theory of evolution and Mendelism could be resolved only when reductionist tools could be applied to the analysis of complex systems. The instrumental reductionist interpretation of the hereditary basis of continuously varying traits provided mathematical tools which eventually allowed the construction of the Modern Synthesis of the theory of evolution.When genotypic as well as environmental variance allow the isolation of parts of the system, it is possible to apply Mendelian reductionism, that is , to treat (...)
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  • Updating the Model Definition of the Gene in the Modern Genomic Era with Implications for Instruction.Mike U. Smith & Linda R. Adkison - 2010 - Science & Education 19 (1):1-20.
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  • Da materialidade às metáforas bem-sucedidas: reflexões sobre as transformações materiais e representativas do corpo biológico.Tatiana Gomes Rotondaro - 2018 - Trans/Form/Ação 41 (3):213-228.
    Resumo: A partir de uma análise sobre a utilização das biotecnologias médicas, este artigo pretende compreender como a disseminação de uma lógica e um discurso "informacional", na área de saúde, mascaram as intervenções médicas efetuadas no corpo humano. Argumenta-se que frequentemente as práticas biotecnológicas são tratadas como meras relações linguísticas, como se não fossem operações de carne e sangue realizadas nos corpos. Para abordar a forma como essa lógica se processa, será feita, neste texto, uma breve discussão sobre como as (...)
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