It is now well-appreciated by philosophers that contemporary large-scale ‘-omics’ studies in biology stand in non-trivial relationships to more orthodox hypothesis-driven approaches. These relationships have been clarified by Ratti ; however, there remains much more to be said regarding how an important field of genomics cited in that work—‘genome-wide association studies’ —fits into this framework. In the present article, we propose a revision to Ratti’s framework more suited to studies such as GWAS. In the process of doing so, we introduce (...) to the philosophical literature novel exploratory experiments in proteomics, and demonstrate how these experiments interplay with the above considerations. (shrink)

Machine learning methods have recently created high expectations in the climate modelling context in view of addressing climate change, but they are often considered as non-physics-based ‘black boxes’ that may not provide any understanding. However, in many ways, understanding seems indispensable to appropriately evaluate climate models and to build confidence in climate projections. Relying on two case studies, we compare how machine learning and standard statistical techniques affect our ability to understand the climate system. For that purpose, we put five (...) evaluative criteria of understanding to work: intelligibility, representational accuracy, empirical accuracy, coherence with background knowledge, and assessment of the domain of validity. We argue that the two families of methods are part of the same continuum where these various criteria of understanding come in degrees, and that therefore machine learning methods do not necessarily constitute a radical departure from standard statistical tools, as far as understanding is concerned. (shrink)

This paper investigates how unsupervised machine learning methods might make hermeneutic interpretive text analysis more objective in the social sciences. Through a close examination of the uses of topic modeling—a popular unsupervised approach in the social sciences—it argues that the primary way in which unsupervised learning supports interpretation is by allowing interpreters to discover unanticipated information in larger and more diverse corpora and by improving the transparency of the interpretive process. This view highlights that unsupervised modeling does not eliminate the (...) researchers’ judgments from the process of producing evidence for social scientific theories. The paper shows this by distinguishing between two prevalent attitudes toward topic modeling, i.e., topic realism and topic instrumentalism. Under neither can modeling provide social scientific evidence without the researchers’ interpretive engagement with the original text materials. Thus the unsupervised text analysis cannot improve the objectivity of interpretation by alleviating the problem of underdetermination in interpretive debate. The paper argues that the sense in which unsupervised methods can improve objectivity is by providing researchers with the resources to justify to others that their interpretations are correct. This kind of objectivity seeks to reduce suspicions in collective debate that interpretations are the products of arbitrary processes influenced by the researchers’ idiosyncratic decisions or starting points. The paper discusses this view in relation to alternative approaches to formalizing interpretation and identifies several limitations on what unsupervised learning can be expected to achieve in terms of supporting interpretive work. (shrink)

A response to a recent critique by Cem Bozşahin of the theory of syntactic semantics as it applies to Helen Keller, and some applications of the theory to the philosophy of computer science.

Philosophy is unsolved. My forthcoming book sets forth the final resolution, with some exceptions, to this 2,500 year crisis. I am currently close to finishing page 983.

As the demand for explainable deep learning grows in the evaluation of language technologies, the value of a principled grounding for those explanations grows as well. Here we study the state-of-the-art in explanation for neural models for natural-language processing (NLP) tasks from the viewpoint of philosophy of science. We focus on recent evaluation work that finds brittleness in explanations obtained through attention mechanisms.We harness philosophical accounts of explanation to suggest broader conclusions from these studies. From this analysis, we assert the (...) impossibility of causal explanations from attention layers over text data. We then introduce NLP researchers to contemporary philosophy of science theories that allow robust yet non-causal reasoning in explanation, giving computer scientists a vocabulary for future research. (shrink)

This paper attempts to describe and address a specific puzzle related to compositionality in artificial networks such as Deep Neural Networks and machine learning in general. The puzzle identified here touches on a larger debate in Artificial Intelligence related to epistemic opacity but specifically focuses on computational applications of human level linguistic abilities or properties and a special difficulty with relation to these. Thus, the resulting issue is both general and unique. A partial solution is suggested.

Recent scholarship in philosophy of science and technology has shown that scientific and technological decision making are laden with values, including values of a social, political, and/or ethical character. This paper examines the role of value judgments in the design of machine-learning systems generally and in recidivism-prediction algorithms specifically. Drawing on work on inductive and epistemic risk, the paper argues that ML systems are value laden in ways similar to human decision making, because the development and design of ML systems (...) requires human decisions that involve tradeoffs that reflect values. In many cases, these decisions have significant—and, in some cases, disparate—downstream impacts on human lives. After examining an influential court decision regarding the use of proprietary recidivism-prediction algorithms in criminal sentencing, Wisconsin v. Loomis, the paper provides three recommendations for the use of ML in penal systems. (shrink)