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Genidentity and Biological Processes

In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press (2018)

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  1. Explanation in two dimensions: Diagrams and biological explanation.Laura Perini - 2005 - Biology and Philosophy 20 (2-3):257-269.
    Molecular biologists and biochemists often use diagrams to present hypotheses. Analysis of diagrams shows that their content can be expressed with linguistic representations. Why do biologists use visual representations instead? One reason is simple comprehensibility: some diagrams present information which is readily understood from the diagram format, but which would not be comprehensible if the same information was expressed linguistically. But often diagrams are used even when concise, comprehensible linguistic alternatives are available. I explain this phenomenon by showing why diagrammatic (...)
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  • Sensational properties: Theses to accept and theses to reject.Christopher Peacocke - 2008 - Revue Internationale de Philosophie 62 (1):7-24.
    The subjective properties of an experience are those which specify what having the experience is like for its subject. The sensational properties of an experience are those of its subjective properties that it does not possess in virtue of features of the way the experience represents the world as being (its representational content). Perhaps no topic in the philosophy of mind has been more vigorously debated in the past quarter-century than whether there are any sensational properties, so conceived. The existence (...)
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  • A Contribution to the Theory of the Living Organism.James W. Papez & W. E. Agar - 1945 - Philosophical Review 54 (3):274.
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  • Causal democracy and causal contributions in developmental systems theory.Susan Oyama - 2000 - Philosophy of Science 67 (3):347.
    In reworking a variety of biological concepts, Developmental Systems Theory (DST) has made frequent use of parity of reasoning. We have done this to show, for instance, that factors that have similar sorts of impact on a developing organism tend nevertheless to be invested with quite different causal importance. We have made similar arguments about evolutionary processes. Together, these analyses have allowed DST not only to cut through some age-old muddles about the nature of development, but also to effect a (...)
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  • A sensorimotor account of vision and visual consciousness.J. Kevin O’Regan & Alva Noë - 2001 - Behavioral and Brain Sciences 24 (5):883-917.
    Many current neurophysiological, psychophysical, and psychological approaches to vision rest on the idea that when we see, the brain produces an internal representation of the world. The activation of this internal representation is assumed to give rise to the experience of seeing. The problem with this kind of approach is that it leaves unexplained how the existence of such a detailed internal representation might produce visual consciousness. An alternative proposal is made here. We propose that seeing is a way of (...)
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  • Size doesn’t matter: towards a more inclusive philosophy of biology. [REVIEW]Maureen A. O’Malley & John Dupré - 2007 - Biology and Philosophy 22 (2):155-191.
    Philosophers of biology, along with everyone else, generally perceive life to fall into two broad categories, the microbes and macrobes, and then pay most of their attention to the latter. ‘Macrobe’ is the word we propose for larger life forms, and we use it as part of an argument for microbial equality. We suggest that taking more notice of microbes – the dominant life form on the planet, both now and throughout evolutionary history – will transform some of the philosophy (...)
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  • Fundamental issues in systems biology.Maureen A. O'Malley & John Dupré - 2005 - Bioessays 27 (12):1270-1276.
    In the context of scientists' reflections on genomics, we examine some fundamental issues in the emerging postgenomic discipline of systems biology. Systems biology is best understood as consisting of two streams. One, which we shall call ‘pragmatic systems biology’, emphasises large‐scale molecular interactions; the other, which we shall refer to as ‘systems‐theoretic biology’, emphasises system principles. Both are committed to mathematical modelling, and both lack a clear account of what biological systems are. We discuss the underlying issues in identifying systems (...)
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  • The Human Animal: Personal Identity without Psychology.Jim Stone - 1997 - Philosophical and Phenomenological Research 60 (2):495-497.
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  • The Human Animal: Personal Identity Without Psychology.Eric Todd Olson - 1997 - New York, US: Oxford University Press.
    Most philosophers writing about personal identity in recent years claim that what it takes for us to persist through time is a matter of psychology. In this groundbreaking new book, Eric Olson argues that such approaches face daunting problems, and he defends in their place a radically non-psychological account of personal identity. He defines human beings as biological organisms, and claims that no psychological relation is either sufficient or necessary for an organism to persist. Olson rejects several famous thought-experiments dealing (...)
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  • Darwinian metaphysics: Species and the question of essentialism.Samir Okasha - 2002 - Synthese 131 (2):191-213.
    Biologists and philosophers of biology typically regard essentialism about speciesas incompatible with modern Darwinian theory. Analytic metaphysicians such asKripke, Putnam and Wiggins, on the other hand, believe that their essentialist thesesare applicable to biological kinds. I explore this tension. I show that standard anti-essentialist considerations only show that species do not have intrinsic essential properties. I argue that while Putnam and Kripke do make assumptions that contradict received biological opinion, their model of natural kinds, suitably modified, is partially applicable to (...)
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  • What is Life? [REVIEW]E. N. - 1946 - Journal of Philosophy 43 (7):194.
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  • The Machine Conception of the Organism in Development and Evolution: A Critical Analysis.Daniel J. Nicholson - 2014 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 48:162-174.
    This article critically examines one of the most prevalent metaphors in modern biology, namely the machine conception of the organism (MCO). Although the fundamental differences between organisms and machines make the MCO an inadequate metaphor for conceptualizing living systems, many biologists and philosophers continue to draw upon the MCO or tacitly accept it as the standard model of the organism. This paper analyses the specific difficulties that arise when the MCO is invoked in the study of development and evolution. In (...)
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  • The Concept of Mechanism in Biology.Daniel J. Nicholson - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):152-163.
    The concept of mechanism in biology has three distinct meanings. It may refer to a philosophical thesis about the nature of life and biology (‘mechanicism’), to the internal workings of a machine-like structure (‘machine mechanism’), or to the causal explanation of a particular phenomenon (‘causal mechanism’). In this paper I trace the conceptual evolution of ‘mechanism’ in the history of biology, and I examine how the three meanings of this term have come to be featured in the philosophy of biology, (...)
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  • Rethinking Woodger’s Legacy in the Philosophy of Biology.Daniel J. Nicholson & Richard Gawne - 2014 - Journal of the History of Biology 47 (2):243-292.
    The writings of Joseph Henry Woodger (1894–1981) are often taken to exemplify everything that was wrongheaded, misguided, and just plain wrong with early twentieth-century philosophy of biology. Over the years, commentators have said of Woodger: (a) that he was a fervent logical empiricist who tried to impose the explanatory gold standards of physics onto biology, (b) that his philosophical work was completely disconnected from biological science, (c) that he possessed no scientific or philosophical credentials, and (d) that his work was (...)
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  • Organisms ≠ Machines.Daniel J. Nicholson - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):669-678.
    The machine conception of the organism (MCO) is one of the most pervasive notions in modern biology. However, it has not yet received much attention by philosophers of biology. The MCO has its origins in Cartesian natural philosophy, and it is based on the metaphorical redescription of the organism as a machine. In this paper I argue that although organisms and machines resemble each other in some basic respects, they are actually very different kinds of systems. I submit that the (...)
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  • Neither Logical Empiricism nor Vitalism, but Organicism: What the Philosophy of Biology Was.Daniel J. Nicholson & Richard Gawne - 2015 - History and Philosophy of the Life Sciences 37 (4):345-381.
    Philosophy of biology is often said to have emerged in the last third of the twentieth century. Prior to this time, it has been alleged that the only authors who engaged philosophically with the life sciences were either logical empiricists who sought to impose the explanatory ideals of the physical sciences onto biology, or vitalists who invoked mystical agencies in an attempt to ward off the threat of physicochemical reduction. These schools paid little attention to actual biological science, and as (...)
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  • Biological atomism and cell theory.Daniel J. Nicholson - 2010 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 41 (3):202-211.
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  • Events, processes, and states.Alexander P. D. Mourelatos - 1978 - Linguistics and Philosophy 2 (3):415 - 434.
    The familiar Vendler-Kenny scheme of verb-types, viz., performances (further differentiated by Vedler into accomplishments and achievements), activities, and states, is too narrow in two important respects. First, it is narrow linguistically. It fails to take into account the phenomenon of verb aspect. The trichotomy is not one of verbs as lexical types but of predications. Second, the trichotomy is narrow ontologically. It is a specification in the context of human agency of the more fundamental, topic-neutral trichotomy, event-process-state.The central component in (...)
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  • An organizational account of biological functions.Matteo Mossio, Cristian Saborido & Alvaro Moreno - 2009 - British Journal for the Philosophy of Science 60 (4):813-841.
    In this paper, we develop an organizational account that defines biological functions as causal relations subject to closure in living systems, interpreted as the most typical example of organizationally closed and differentiated self-maintaining systems. We argue that this account adequately grounds the teleological and normative dimensions of functions in the current organization of a system, insofar as it provides an explanation for the existence of the function bearer and, at the same time, identifies in a non-arbitrary way the norms that (...)
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  • The problem of the emergence of functional diversity in prebiotic evolution.Alvaro Moreno & Kepa Ruiz-Mirazo - 2009 - Biology and Philosophy 24 (5):585-605.
    Since Darwin it is widely accepted that natural selection (NS) is the most important mechanism to explain how biological organisms—in their amazing variety—evolve and, therefore, also how the complexity of certain natural systems can increase over time, creating ever new functions or functional structures/relationships. Nevertheless, the way in which NS is conceived within Darwinian Theory already requires an open, wide enough, functional domain where selective forces may act. And, as the present paper will try to show, this becomes even more (...)
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  • A Naturalizd Account of the Inside-Outside Dichotomy.Alvaro Moreno & Xabier Barandiaran - 2004 - Philosophica 73 (1).
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  • XIV.—Symposium: Are the Materials of Sense Affections of the Mind?G. E. Moore, W. E. Johnson, G. Dawes Hicks, J. A. Smith & James Ward - 1917 - Proceedings of the Aristotelian Society 17 (1):418-458.
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  • Powers: A Study in Metaphysics.George Molnar - 2003 - New York: Oxford University Press. Edited by Stephen Mumford.
    George Molnar came to see that the solution to a number of the problems of contemporary philosophy lay in the development of an alternative to Hume's metaphysics. This alternative would have real causal powers at its centre. Molnar set about developing a thorough account of powers that might persuade those who remained, perhaps unknowingly, in the grip of Humean assumptions. He succeeded in producing something both highly focused and at the same time wide-ranging. He showed both that the notion of (...)
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  • Natural selection as a population-level causal process.Roberta L. Millstein - 2006 - British Journal for the Philosophy of Science 57 (4):627-653.
    Recent discussions in the philosophy of biology have brought into question some fundamental assumptions regarding evolutionary processes, natural selection in particular. Some authors argue that natural selection is nothing but a population-level, statistical consequence of lower-level events (Matthen and Ariew [2002]; Walsh et al. [2002]). On this view, natural selection itself does not involve forces. Other authors reject this purely statistical, population-level account for an individual-level, causal account of natural selection (Bouchard and Rosenberg [2004]). I argue that each of these (...)
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  • There are no criteria of identity over time.Trenton Merricks - 1998 - Noûs 32 (1):106-124.
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  • On Griffiths and Gray’s Concept of Expanded and Diffused Inheritance.Francesca Merlin - 2007 - Biological Theory 5 (3):206-215.
    Developmental Systems Theory is a theoretical reinterpretation of biological phenomena that challenges the conventional gene-centered account of development and evolution. In this article, I focus on Griffiths and Gray’s version of DST and particularly analyze their reconceptualization of inheritance. First, I present their concept of expanded and diffused inheritance; then, I examine and criticize their rejection of the multiple inheritance system model; finally, I present and oppose Griffiths and Gray’s extension of what they call the “causal parity thesis” from development (...)
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  • The Facts of Causation.D. H. Mellor - 1995 - Mind 107 (428):855-875.
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  • Dov Hugh Mellor, The Facts of Causation. [REVIEW]Max Urchs - 1997 - Erkenntnis 46 (2):277-279.
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  • The Facts of Causation.D. H. Mellor - 1995 - New York: Routledge.
    Everything we do relies on causation. We eat and drink because this causes us to stay alive. Courts tell us who causes crimes, criminology tell us what causes people to commit them. D.H. Mellor shows us that to understand the world and our lives we must understand causation. _The Facts of Causation_, now available in paperback, is essential reading for students and for anyone interested in reading one of the ground-breaking theories in metaphysics. We cannot understand the world and our (...)
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  • Personale Identität ohne Persönlichkeit? Anmerkungen zu einem vernachlässigten Zusammenhang.Anne Sophie Meincke - 2016 - Philosophisches Jahrbuch 123 (1):114-145.
    Recent decades have seen an increasing tendency to exclude the phenomenon of personality from the metaphysical investigation of personal identity. We are advised not to confuse personal identity as a philosophical subject, namely as the metaphysical issue of specifying what it is that makes a person staying numerically self-identical over time, with the psychological question of 'personal identity' which asks what makes someone the individual person they are with their particular character and history. However, one might be unsatisfied with this. (...)
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  • What Functions Explain. Functional Explanation and Self-Reproducing Systems, Peter McLaughlin. [REVIEW]Gerhard Ernst - 2002 - Erkenntnis 57 (1):123-126.
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  • Causes as powers: Stephen Mumford and Rani Lill Anjum: Getting causes from powers. Oxford: Oxford University Press, 2011, 272pp, £35 HB. [REVIEW]Jennifer McKitrick, Anna Marmodoro, Stephen Mumford & Rani Lill Anjum - 2013 - Metascience 22 (3):545-559.
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  • The Concept of Nature. Tanner Lectures delivered in Trinity College, November, 1919.Evander Bradley McGilvary & A. N. Whitehead - 1921 - Philosophical Review 30 (5):500.
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  • The Mind in Nature.C. B. Martin - 2007 - Oxford, GB: Oxford University Press.
    What are the most fundamental features of the world? Do minds stand outside the natural order? Is a unified picture of mental and physical reality possible? The Mind in Nature provides a staunchly realist account of the world as a unified system incorporating both the mental and the physical.
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  • The Mind in Nature * By C. B. MARTIN. [REVIEW]C. Martin - 2009 - Analysis 69 (2):386-388.
    The Mind in Nature has two central aims. First, that of defending a ‘basic ontology’. Second, having advanced a plausible ontological framework, to appeal to it to cast light on the status of intentionality and the nature of consciousness, paying particular attention to the question of what distinguishes conscious systems from those that are vegetative.Central to Martin's basic ontology is his acceptance of a realist conception of dispositionality. Contrary to the view of David Lewis and others, talk about a thing's (...)
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  • Epistemic Styles in German and American Embryology.Jane Maienschein - 1991 - Science in Context 4 (2):407-427.
    The ArgumentThis paper argues that different epistemic styles exist in science, and that these make up an important unit of analysis for studying science. On occasion these different sets of commitments to ways of doing and knowing about the world may fall along national boundaries. The case presented here examines German and American embryology around 1900 and shows that differences in goals and approaches make up different epistemic styles.In particular, the Germans sought causal mechanical explanations of as many phenomena as (...)
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  • Thinking about mechanisms.Peter Machamer, Lindley Darden & Carl F. Craver - 2000 - Philosophy of Science 67 (1):1-25.
    The concept of mechanism is analyzed in terms of entities and activities, organized such that they are productive of regular changes. Examples show how mechanisms work in neurobiology and molecular biology. Thinking in terms of mechanisms provides a new framework for addressing many traditional philosophical issues: causality, laws, explanation, reduction, and scientific change.
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  • Consciousness Explained.William G. Lycan - 1993 - Philosophical Review 102 (3):424.
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  • What is a criterion of identity?E. J. Lowe - 1989 - Philosophical Quarterly 39 (154):1-21.
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  • Rethinking the structure of evolutionary theory for an extended synthesis.A. C. Love - 2010 - In M. Pigliucci & G. Müller (eds.), Evolution—The Extended Synthesis. MIT Press. pp. 403–441.
    This chapter describes the theoretical implications of Extended Synthesis and addresses the methodological options available for determining aspects of theoretical structure. It uses a “bottom-up” approach focused on evolutionary theory in particular, as opposed to a “top-down” strategy that attempts to characterize the structure of all scientific theories. The chapter shows that there are multiple stable components contained within a broad representation of evolutionary theory. It suggests that the philosophical analysis offered in the chapter regarding the structure of evolutionary theory (...)
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  • Events.Lawrence Brian Lombard - 1979 - Canadian Journal of Philosophy 9 (3):425 - 460.
    In this paper, I want eventually to get around to proposing a criterion of identity for events which are changes in physical objects, where events are construed as comprising a distinct metaphysical category of thing. The proposal will be preceded by a discussion of what I take to be a mistaken suggestion for such a criterion; I will do that because I think that seeing what it takes to show why that suggestion fails helps to motivate a theory about what (...)
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  • General Biology and Philosophy of Organism.W. H. Werkmeister - 1947 - Philosophy and Phenomenological Research 7 (4):654-659.
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  • On the Plurality of Worlds.William G. Lycan - 1988 - Journal of Philosophy 85 (1):42-47.
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  • The Calculus of Individuals and Its Uses.Henry S. Leonard & Nelson Goodman - 1940 - Journal of Symbolic Logic 5 (3):113-114.
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  • How molecular is molecular developmental biology? A reply to Alex Rosenberg's reductionism redux: Computing the embryo. [REVIEW]Manfred D. Laubichler & Günter P. Wagner - 2001 - Biology and Philosophy 16 (1):53-68.
    This paper argues in defense of theanti-reductionist consensus in the philosophy ofbiology. More specifically, it takes issues with AlexRosenberg's recent challenge of this position. Weargue that the results of modern developmentalgenetics rather than eliminating the need forfunctional kinds in explanations of developmentactually reinforce their importance.
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  • Microcinematography and the History of Science and Film.Hannah Landecker - 2006 - Isis 97 (1):121-132.
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  • Microcinematography and the History of Science and Film.Hannah Landecker - 2006 - Isis 97 (1):121-132.
    The history of microcinematography is explored here as an example of the possible historiographical directions for work on science and film in the twentieth century. Topics discussed include investigations of the role of time in experiment, and the constant interplay between static and dynamic modes of imaging in scientific research; the role of films as depictions of both the objects of science and the process of scientific looking itself; and the possibility for telling a social history of science through investigation (...)
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  • Cellular Features: Microcinematography and Film Theory.Hannah Landecker - 2005 - Critical Inquiry 31 (4):903.
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  • Metaphors We Live by.Max Black - 1980 - Journal of Aesthetics and Art Criticism 40 (2):208-210.
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  • Metaphors we live by.George Lakoff & Mark Johnson - 1980 - Chicago: University of Chicago Press. Edited by Mark Johnson.
    The now-classic Metaphors We Live By changed our understanding of metaphor and its role in language and the mind. Metaphor, the authors explain, is a fundamental mechanism of mind, one that allows us to use what we know about our physical and social experience to provide understanding of countless other subjects. Because such metaphors structure our most basic understandings of our experience, they are "metaphors we live by"--metaphors that can shape our perceptions and actions without our ever noticing them. In (...)
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