Dynamics of Complex Systems is the first text describing the modern unified study of complex systems. It is designed for upper-undergraduate/beginning graduate-level students, and covers a broad range of applications in a broad array of disciplines. A central goal of this text is to develop models and modeling techniques that are useful when applied to all complex systems. This is done by adopting both analytic tools, including statistical mechanics and stochastic dynamics, and computer simulation techniques, such as cellular automata and (...) Monte Carlo. In four sets of paired, self-contained chapters, Yaneer Bar-Yam discusses complex systems in the context of neural networks, protein folding, living organisms, and finally, human civilization itself. (shrink)

Strong claims have been made for emergence as a new paradigm for understanding science, consciousness, and religion. Tracing the past history and current definitions of the concept, Clayton assesses the case for emergent phenomena in the natural world and their significance for philosophy and theology. Complex emergent phenomena require irreducible levels of explanation in physics, chemistry and biology. This pattern of emergence suggests a new approach to the problem of consciousness, which is neither reducible to brain states nor proof of (...) a mental substance or soul. Although emergence does not entail classical theism, it is compatible with a variety of religious positions. Clayton concludes with a defence of emergentist panentheism and a Christian constructive theology consistent with the new sciences of emergence. (shrink)

This work has been selected by scholars as being culturally important, and is part of the knowledge base of civilization as we know it. This work was reproduced from the original artifact, and remains as true to the original work as possible. Therefore, you will see the original copyright references, library stamps (as most of these works have been housed in our most important libraries around the world), and other notations in the work.This work is in the public domain in (...) the United States of America, and possibly other nations. Within the United States, you may freely copy and distribute this work, as no entity (individual or corporate) has a copyright on the body of the work.As a reproduction of a historical artifact, this work may contain missing or blurred pages, poor pictures, errant marks, etc. Scholars believe, and we concur, that this work is important enough to be preserved, reproduced, and made generally available to the public. We appreciate your support of the preservation process, and thank you for being an important part of keeping this knowledge alive and relevant. (shrink)

Stuart Kauffman here presents a brilliant new paradigm for evolutionary biology, one that extends the basic concepts of Darwinian evolution to accommodate recent findings and perspectives from the fields of biology, physics, chemistry and mathematics. The book drives to the heart of the exciting debate on the origins of life and maintenance of order in complex biological systems. It focuses on the concept of self-organization: the spontaneous emergence of order widely observed throughout nature. Kauffman here argues that self-organization plays an (...) important role in the emergence of life itself and may play as fundamental a role in shaping life's subsequent evolution as does the Darwinian process of natural selection. Yet until now no systematic effort has been made to incorporate the concept of self-organization into evolutionary theory. The construction requirements which permit complex systems to adapt remain poorly understood, as is the extent to which selection itself can yield systems able to adapt more successfully. This book explores these themes. It shows how complex systems, contrary to expectations, can spontaneously exhibit stunning degrees of order, and how this order, in turn, is essential for understanding the emergence and development of life on Earth. Topics include the new biotechnology of applied molecular evolution, with its important implications for developing new drugs and vaccines; the balance between order and chaos observed in many naturally occurring systems; new insights concerning the predictive power of statistical mechanics in biology; and other major issues. Indeed, the approaches investigated here may prove to be the new center around which biologicalscience itself will evolve. The work is written for all those interested in the cutting edge of research in the life sciences. (shrink)

Familiarity with Charles Darwin's treatise on evolution is essential to every well-educated individual. One of the most important books ever published--and a continuing source of controversy, a century and a half later--this classic of science is reproduced in a facsimile of the critically acclaimed first edition.

When the whole is greater than the sum of the parts--indeed, so great that the sum far transcends the parts and represents something utterly new and different--we call that phenomenon emergence. When the chemicals diffusing in the primordial waters came together to form the first living cell, that was emergence. When the activities of the neurons in the brain result in mind, that too is emergence. In The Emergence of Everything, one of the leading scientists involved in the study of (...) complexity, Harold J. Morowitz, takes us on a sweeping tour of the universe, a tour with 28 stops, each one highlighting a particularly important moment of emergence. For instance, Morowitz illuminates the emergence of the stars, the birth of the elements and of the periodic table, and the appearance of solar systems and planets. We look at the emergence of living cells, animals, vertebrates, reptiles, and mammals, leading to the great apes and the appearance of humanity. He also examines tool making, the evolution of language, the invention of agriculture and technology, and the birth of cities. And as he offers these insights into the evolutionary unfolding of our universe, our solar system, and life itself, Morowitz also seeks out the nature of God in the emergent universe, the God posited by Spinoza, Bruno, and Einstein, a God Morowitz argues we can know through a study of the laws of nature. Written by one of our wisest scientists, The Emergence of Everything offers a fascinating new way to look at the universe and the natural world, and it makes an important contribution to the dialogue between science and religion. (shrink)

[Time, the fundamental dimension of our existence, has fascinated artists, philosophers, and scientists of every culture and every century. All of us can remember a moment as a child when time became a personal reality, when we realized what a "year" was, or asked ourselves when "now" happened. Common sense says time moves forward, never backward, from cradle to grave. Nevertheless, Einstein said that time is an illusion. Nature's laws, as he and Newton defined them, describe a timeless, deterministic universe (...) within which we can make predictions with complete certainty. In effect, these great physicists contended that time is reversible and thus meaningless. (shrink)

The Darwinian concept of natural selection was conceived within a set of Newtonian background assumptions about systems dynamics. Mendelian genetics at first did not sit well with the gradualist assumptions of the Darwinian theory. Eventually, however, Mendelism and Darwinism were fused by reformulating natural selection in statistical terms. This reflected a shift to a more probabilistic set of background assumptions based upon Boltzmannian systems dynamics. Recent developments in molecular genetics and paleontology have put pressure on Darwinism once again. Current work (...) on self-organizing systems may provide a stimulus not only for increased problem solving within the Darwinian tradition, especially with respect to origins of life, developmental genetics, phylogenetic pattern, and energy-flow ecology, but for deeper understanding of the very phenomenon of natural selection itself. Since self-organizational phenomena depend deeply on stochastic processes, self-organizational systems dynamics advance the probability revolution. In our view, natural selection is an emergent phenomenon of physical and chemical selection. These developments suggest that natural selection may be grounded in physical law more deeply than is allowed by advocates of the autonomy of biology, while still making it possible to deny, with autonomists, that evolutionary explanations can be modeled in terms of a deductive relationship between laws and cases. We explore the relationship between, chance, self-organization, and selection as sources of order in biological systems in order to make these points. (shrink)

The design inference uncovers intelligent causes by isolating their key trademark: specified events of small probability. Just about anything that happens is highly improbable, but when a highly improbable event is also specified undirected natural causes lose their explanatory power. Design inferences can be found in a range of scientific pursuits from forensic science to research into the origins of life to the search for extraterrestrial intelligence. This challenging and provocative 1998 book shows how incomplete undirected causes are for science (...) and breathes new life into classical design arguments. It will be read with particular interest by philosophers of science and religion, other philosophers concerned with epistemology and logic, probability and complexity theorists, and statisticians. (shrink)

In the same year, 1961, Peter D. Mitchell and Robert R.J.P. Williams both put forward hypotheses for the mechanism of oxidative phosphorylation in mitochondria and photophosphorylation in chloroplasts. Mitchell's proposal was ultimately adopted and became known as the chemiosmotic theory. Both hypotheses were based on protons and differed markedly from the then prevailing chemical theory originally proposed by E.C. Slater in 1953, which by 1961 was failing to account for a number of experimental observations. Immediately following the publication of Williams's (...) hypothesis and before his own was published, Mitchell initiated a correspondence. Examination of the letters shows the development of a dispute based on the validity of the proposals, who should have priority and particularly whether Mitchell had drawn on Williams's work without acknowledgement. We have concluded that Mitchell's proposals were original although it is evident that prior to the correspondence Williams had considered and rejected a proposition similar to Mitchell's theory. However, a major cause of the dispute was the difference in disciplinary backgrounds of Mitchell, a microbial biochemist and Williams, a chemist. (shrink)

A renowned mathematician shows how the "science of surprise" can help explain some of the most inexplicable phenomena in science, nature, the arts, the economy, and more.

Examines intelligent design as a science, a philosophy and a movement for educational reform. Central to all three aspects of ID is its claim that, if science education is to be other than state-sponsored propaganda, a distinction must be drawn between empirical science and materialist philosophy.

A fascinating exploration of the very essence of life itself sheds new light on the order and evolution in complex life systems and defines and explains autonomous agents and work within the contexts of thermodynamics and information theory, setting the stage for a dramatic technological revolution. 50,000 first printing.

This volume presentsa definitive introduction to the core areas of philosophy of science.

The genetic code appeared on Earth with the first cells. The codes of cultural evolution arrived almost four billion years later. These are the only codes that are recognized by modern biology. In this book, however, Marcello Barbieri explains that there are many more organic codes in nature, and their appearance not only took place throughout the history of life but marked the major steps of that history. A code establishes a correspondence between two independent 'worlds', and the codemaker is (...) a third party between those 'worlds'. Therefore the cell can be thought of as a trinity of genotype, phenotype and ribotype. The ancestral ribotypes were the agents which gave rise to the first cells. The book goes on to explain how organic codes and organic memories can be used to shed new light on the problems encountered in cell signalling, epigenesis, embryonic development, and the evolution of language. (shrink)

"_The Moment of Complexity_ is a profoundly original work. In remarkable and insightful ways, Mark Taylor traces an entirely new way to view the evolution of our culture, detailing how information theory and the scientific concept of complexity can be used to understand recent developments in the arts and humanities. This book will ultimately be seen as a classic."-John L. Casti, Santa Fe Institute, author of _Gödel: A Life of Logic, the Mind, and Mathematics_ The science of complexity accounts for (...) that inscrutable mix of chaos and order that governs our natural world. Complexity explains how networks emerge and function, how species organize into ecosystems, how stars form into galaxies, and how just a few sequences of DNA can account for so many different life forms. Recently, the idea of complexity has taken the worlds of business and politics by storm. The concept is used to account for phenomena as varied as the behavior of the stock market, the response of voting populations, and the effects of risk management. Even Disney has used complexity theory to manage crowd control at its theme parks. Given the startling development of new information technologies, we now live in a moment of unprecedented complexity, an era in which change occurs faster than our ability to comprehend it. With _The Moment of Complexity_, Mark C. Taylor offers a timely map for this unfamiliar terrain opening in our midst, unfolding an original philosophy through a remarkable synthesis of science and culture. According to Taylor, complexity is not just a breakthrough scientific concept, but the defining quality of the post-Cold War era. The flux of digital currents swirling around us, he argues, has created a new network culture with its own distinctive logic and dynamic. Drawing on resources from information theory and evolutionary biology, Taylor explains the operation of complex adaptive systems in social and cultural processes and captures a whole new zeitgeist in the making. To appreciate the significance of our emerging network culture, he claims, we need not only to understand contemporary scientific and technological transformations, but also to explore the subtle influences of art, architecture, philosophy, religion, and higher education. _The Moment of Complexity_, then, is a remarkable work of cultural analysis on a scale rarely seen today. To follow its trajectory is to learn how we arrived at this critical moment in our culture, and to know where we might head in the twenty-first century. (shrink)

Life's Solution builds a persuasive case for the predictability of evolutionary outcomes. The case rests on a remarkable compilation of examples of convergent evolution, in which two or more lineages have independently evolved similar structures and functions. The examples range from the aerodynamics of hovering moths and hummingbirds to the use of silk by spiders and some insects to capture prey. Going against the grain of Darwinian orthodoxy, this book is a must read for anyone grappling with the meaning of (...) evolution and our place in the Universe. Simon Conway Morris is the Ad Hominen Professor in the Earth Science Department at the University of Cambridge and a Fellow of St. John's College and the Royal Society. His research focuses on the study of constraints on evolution, and the historical processes that lead to the emergence of complexity, especially with respect to the construction of the major animal body parts in the Cambrian explosion. Previous books include The Crucible of Creation (Getty Center for Education in the Arts, 1999) and co-author of Solnhofen (Cambridge, 1990). Hb ISBN (2003) 0-521-82704-3. (shrink)

This chapter contains sections titled: Introduction: The Problem of Emergence and Reduction The Varieties of Reductionism: Ontological and Epistemological The Reduction and Emergence Debate Today: Specific Cases Seeming to Warrant the Label of Ontological or Epistemological Emergence Questions for Future Research.

The design argument was rebutted by David Hume. He argued that the world and its contents (such as organisms) were not analogous to human artifacts. Hume further suggested that there were equally plausible alternatives to design to explain the organized complexity of the cosmos, such as random processes in multiple universes, or that matter could have inherent properties to self-organize, absent any external crafting. William Paley, writing after Hume, argued that the functional complexity of living beings, however, defied naturalistic explanations. (...) In effect he dared anyone to come up with an alternative to his inference to design, and hence a designer, outside of nature. Charles Darwin explained the apparent design of functional complexity by his theory of natural selection. Asa Gray, however, in essays as well as in correspondence with Darwin argued that natural selection allowed for a type of ' evolutionary teleology' in which design at most could be considered the result of universal principles. F. E. Hicks updated Hume by specifically objecting to the use of design arguments by Paley. Hicks argued that the apparent design seen in nature reflected order at a deep level in nature. The design argument was briefly revived by Lawrence Henderson early in the twentieth century but he ultimately concluded that design and teleology were not necessarily mutually entailing and he retracted his design argument in favor of one that he termed ' natural teleology'. The current claims of ' intelligent design' have the same logical problems that have beset previous design arguments. If design is divorced from teleology and its discontents put behind us, then there is a possibility that the latter can have a place in the development of theories to explain the phenomena of emergent complexity. (shrink)

Shoot an arrow at a wall, and then paint a target around it so that the arrow sticks squarely in the bull's eye. Alternatively, paint a fixed target on a wall, and then shoot an arrow so that it sticks squarely in the bull's eye. How do these situations differ? In both instances the precise place where the arrow lands is highly improbable. Yet in the one, one can do no better than attribute the arrow's landing to chance, whereas in (...) the other one rightly attributes the arrow's landing to the archer's skill. ;Highly improbable events occur all the time, and by themselves may legitimately be attributed to chance. Yet when an event also conforms to a pattern given independently of that event , one rightly refuses to attribute the event to chance. Patterns given independently of events are called specifications. This dissertation explicates the relation of independence between specification and event, and sets precise bounds on what may count as a probability small enough to eliminate chance. Although this dissertation connects with how statistics eliminates chance, it considerably extends and clarifies the range of application for chance-elimination arguments based on small probabilities. ;The dual notions of specification and small probability together help justify a regulative principle of probability called the Law of Small Probability, which asserts that specified events of small probability do not occur by chance. This principle engenders a form of inference called the design inference, and a mode of explanation called design. To infer design in explaining an event is to eliminate decisively explanations of that event which appeal to law-like regularities or chance. (shrink)

The relationship between law and chance in the early evolution of life is the guidingtheme of this provocative study. The author explores modern ideas about the origin of life from thestandpoint of philosophy of science, emphasizing the contribution made by information theory.Küppersasserts that all life phenomena are steered by information and that this information is alreadydefined materially in a universal form at the level of the biological macromolecule. The question ofthe origin of life turns out to be the question of (...) the origin of biological informationInformationand the Origin of Life takes up the fundamental problems of whether and, if so, to what extent theorigin of semantic information during evolution can be explained as a general phenomenon within theframework of physics and chemistry. The results could have far-reaching consequences for such fieldsas the philosophy of mind and artificial intelligence.Bernd-Olaf Küppers has long focused hisattention on basic questions of natural science and the philosophy of science at the borders ofphysics, chemistry, and biology. He has been engaged since 1971 in research at the Max PlanckInstitute for Biophysical Chemistry, and from 1979 to 1984 he held lecture courses in philosophy atthe University of Göttingen. (shrink)

"By combining recent advances in the physical sciences with some of the novel ideas, techniques, and data of modern biology, this book attempts to achieve a new and different kind of evolutionary synthesis. I found it to be challenging, fascinating, infuriating, and provocative, but certainly not dull."--James H, Brown, University of New Mexico "This book is unquestionably mandatory reading not only for every living biologist but for generations of biologists to come."--Jack P. Hailman, Animal Behaviour , review of the first (...) edition "An important contribution to modern evolutionary thinking. It fortifies the place of Evolutionary Theory among the other well-established natural laws."--R.Gessink, TAXON. (shrink)

Conflicts between science and religion revolve about fundamental assumptions more often than they do facts or theories. The key postulates that have guided science since the Enlightenment appear to be wholly inadequate to describe properly the development of ecosystems. An emended set of tenets adequate to the ecological narrative also significantly ameliorates the adversarial nature of the dialogue between scientists and theists.

Explains the new developments and the scientific impact of the computer as an instrument of the new sciences of complexity.

Presenting an ardent defence of Charles Darwin's theory of evolution, this book offers a clear and comprehensive exposition of Darwin's thinking. Michael Ruse brings the story up to date, examining the origins of life, the fossil record, and the mechanism of natural selection. Rival theories are explored, from punctuated equilibrium to human evolution. The philosophical and religious implications of Darwinism are discussed, including a discussion of Creationism and its modern day offshoot, Intelligent Design Theory. Ruse draws upon the most recent (...) discoveries, writing with a minimum of jargon in order to appeal to all readers, from professional biologists to those concerned that Darwinism is a naturalistic religion that is forced on school children despite their own Christian convictions. Openly revealing his own beliefs, Ruse presents readers with all the information and critical tools they need to make an informed decision on evolutionary theory. (shrink)

Many solar systems in the universe may be expected to contain rocky planets that have accreted organic compounds. These compounds are likely to be universally found. In addition, the chemistry of sulfur, phosphorus, and iron is likely to dominate energy transductions and monomer activation, leading to the eventual emergence of polymers. Proteins and polynucleotides provide living matter with function, structure, and information. The conceptual puzzle regarding their emergence is discussed. The fitness of various elements to serve various roles is analyzed (...) from the viewpoint of electron orbitals. Elements with d orbitals are of central importance. (shrink)

A simple molecular system is described consisting of the reciprocal linkage between an autocatalytic cycle and a self-assembling encapsulation process where the molecular constituents for the capsule are products of the autocatalysis. In a molecular environment sufficiently rich in the substrates, capsule growth will also occur with high predictability. Growth to closure will be most probable in the vicinity of the most prolific autocatalysis and will thus tend to spontaneously enclose supportive catalysts within the capsule interior. If subsequently disrupted in (...) the presence of new substrates, the released components will initiate production of additional catalytic and capsule components that will spontaneously re-assemble into one or more autocell replicas, thereby reconstituting and sometimes reproducing the original. In a diverse molecular environment, cycles of disruption and enclosure will cause auto-cells to incidentally encapsulate other molecules as well as reactive substrates. To the extent that any captured molecule can be incorporated into the autocatalytic process by virtue of structural degeneracy of the catalytic binding sites, the altered autocell will incorporate the new type of component into subsequent replications. Such altered autocells will be progenitors of “lineages” with variant characteristics that will differentially propagate with respect to the availability of commonly required substrates. Autocells are susceptible to a limited form of evolution, capable of leading to more efficient, more environmentally fitted, and more complex forms. This provides a simple demonstration of the plausibility of open-ended reproduction and evolvability without self-replicating template molecules or maintenance of persistent nonequilibrium chemistry. This model identifies an intermediate domain between prebiotic and biotic systems and bridges the gap from nonequilibrium thermodynamics to life. (shrink)

Presenting an ardent defence of Charles Darwin's theory of evolution, this book offers a clear and comprehensive exposition of Darwin's thinking. Michael Ruse brings the story up to date, examining the origins of life, the fossil record, and the mechanism of natural selection. Rival theories are explored, from punctuated equilibrium to human evolution . The philosophical and religious implications of Darwinism are discussed, including a discussion of Creationism and its modern day offshoot, Intelligent Design Theory. Ruse draws upon the most (...) recent discoveries, writing with a minimum of jargon in order to appeal to all readers, from professional biologists to those concerned that Darwinism is a naturalistic religion that is forced on school children despite their own Christian convictions. Openly revealing his own beliefs, Ruse presents readers with all the information and critical tools they need to make an informed decision on evolutionary theory. (shrink)