Results for 'Lane Cooper'

950 found
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  1.  59
    Breathing is coupled with voluntary initiation of mental imagery.Timothy J. Lane - 2022 - NeuroImage 264.
    Previous research has suggested that bodily signals from internal organs are associated with diverse cortical and subcortical processes involved in sensory-motor functions, beyond homeostatic reflexes. For instance, a recent study demonstrated that the preparation and execution of voluntary actions, as well as its underlying neural activity, are coupled with the breathing cycle. In the current study, we investigated whether such breathing-action coupling is limited to voluntary motor action or whether it is also present for mental actions not involving any overt (...)
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  2.  16
    Indication of dynamic neurovascular coupling from inconsistency between EEG and fMRI indices across sleep–wake states.Timothy J. Lane - 2019 - Sleep and Biological Rhythms 17:423-431.
    Neurovascular coupling (NVC), the transient regional hyperemia following the evoked neuronal responses, is the basis of blood oxygenation level-dependent techniques and is generally adopted across physiological conditions, including the intrinsic resting state. However, the possibility of neurovascular dissociations across physiological alterations is indicated in the literature. To examine the NVC stability across sleep–wake states, we used electroencephalography (EEG) as the index of neural activity and functional magnetic resonance imaging (fMRI) as the measure of cerebrovascular response. Eight healthy adults were recruited (...)
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  3.  36
    Abnormal Functional Relationship of Sensorimotor Network With Neurotransmitter-Related Nuclei via Subcortical-Cortical Loops in Manic and Depressive Phases of Bipolar Disorder.Timothy J. Lane - 2020 - Schizophrenia Bulletin 46 (1):163–174.
    Objective Manic and depressive phases of bipolar disorder (BD) show opposite psychomotor symptoms. Neuronally, these may depend on altered relationships between sensorimotor network (SMN) and subcortical structures. The study aimed to investigate the functional relationships of SMN with substantia nigra (SN) and raphe nuclei (RN) via subcortical-cortical loops, and their alteration in bipolar mania and depression, as characterized by psychomotor excitation and inhibition. -/- Method In this resting-state functional magnetic resonance imaging (fMRI) study on healthy (n = 67) and BD (...)
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  4. Too fast or too slow? Time and neuronal variability in bipolar disorder—A combined theoretical and empirical investigation.Timothy Lane & Georg Northoff - forthcoming - Schizophrenia Bulletin 44 (1):54-64.
    Time is an essential feature in bipolar disorder (BP). Manic and depressed BP patients perceive the speed of time as either too fast or too slow. The present article combines theoretical and empirical approaches to integrate phenomenological, psychological, and neuroscientific accounts of abnormal time perception in BP. Phenomenology distinguishes between perception of inner time, ie, self-time, and outer time, ie, world-time, that desynchronize or dissociate from each other in BP: inner time speed is abnormally slow (as in depression) or fast (...)
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  5.  37
    Occipital gamma-aminobutyric acid and glutamate-glutamine alterations in major depressive disorder: An mrs study and meta-analysis.Timothy J. Lane - 2021 - Psychiatry Research: Neuroimaging 308.
    The neurotransmitters GABA and glutamate have been suggested to play a role in Major Depressive Disorder (MDD) through an imbalance between cortical inhibition and excitation. This effect has been highlighted in higher brain areas, such as the prefrontal cortex, but has also been posited in basic sensory cortices. Based on this, magnetic resonance spectroscopy (MRS) was used to investigate potential changes to GABA+ and glutamate+glutamine (Glx) concentrations within the occipital cortex in MDD patients (n = 25) and healthy controls (n (...)
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  6. Functional blindsight and its diagnosis.Timothy Joseph Lane - 2024 - Frontiers in Neurology 15.
    Even when brain scans fail to detect a striate lesion, functional evidence for blindsight can be adduced. In the aftermath of an automobile accident, JK became blind. Results of ophthalmic exams indicated that the blindness must be cortical. Nevertheless, multiple MRI scans failed to detect structural damage to the striate cortex. Prior to the accident JK had been an athlete; after the accident he retained some athletic abilities, arousing suspicions that he might be engaged in fraud. His residual athletic abilities—e.g., (...)
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  7. Timing disownership experiences in the rubber hand illusion.Lane Timothy - 2017 - Cognitive Research: Principles and Implications 2 (4):1-14.
    Some investigators of the rubber hand illusion (RHI) have suggested that when standard RHI induction procedures are employed, if the rubber hand is experienced by participants as owned, their corresponding biological hands are experienced as disowned. Others have demurred: drawing upon a variety of experimental data and conceptual considerations, they infer that experience of the RHI might include the experience of a supernumerary limb, but that experienced disownership of biological hands does not occur. Indeed, some investigators even categorically deny that (...)
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  8.  19
    Reactivity of intrinsic activity temporal structure to a behavioural state change is correlated with depressive symptoms.Timothy Joseph Lane - 2020 - European Journal of Neuroscience 52.
    The brain’s intrinsic activity plays a fundamental role in its function. In normal conditions this activity is responsive to behavioural context, changing as an individual switches between directed tasks and task‐free conditions. A key feature of such changes is the movement of the brain between corresponding critical and sub‐critical states, with these dynamics supporting efficient cognitive processing. Breakdowns in processing efficiency can occur, however, in brain disorders such as depression. It was therefore hypothesised that depressive symptoms would be related to (...)
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  9. Resting state glutamate predicts elevated pre-stimulus alpha during self-relatedness: A combined EEG-MRS study on 'rest-self' overlap.Yu Bai, Timothy Lane, Georg Northoff & et al - 2015 - Social Neuroscience:DOI:10.1080/17470919.2015.107258.
    Recent studies have demonstrated neural overlap between resting state activity and self-referential processing. This “rest-self” overlap occurs especially in anterior cortical midline structures like the perigenual anterior cingulate cortex (PACC). However, the exact neurotemporal and biochemical mechanisms remain to be identified. Therefore, we conducted a combined electroencephalography (EEG)-magnetic resonance spectroscopy (MRS) study. EEG focused on pre-stimulus (e.g., prior to stimulus presentation or perception) power changes to assess the degree to which those changes can predict subjects’ perception (and judgment) of subsequent (...)
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  10.  27
    The neurophysiological basis of the discrepancy between objective and subjective sleep during the sleep onset period: an EEG-fMRI study.Timothy Joseph Lane - 2018 - Sleep 41 (6):1-10.
    Subjective perception of sleep is not necessarily consistent with electroencephalography (EEG) indications of sleep. The mismatch between subjective reports and objective measures is often referred to as “sleep state misperception.” Previous studies evince that this mismatch is found in both patients with insomnia and in normal sleepers, but the neurophysiological mechanism remains unclear. The aim of the study is to explore the neurophysiological basis of this mechanism, from the perspective of both EEG power and functional magnetic resonance imaging (fMRI) fluctuations. (...)
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  11.  36
    Temporal Preparation, Impulsivity and Short-Term Memory in Depression.Timothy Joseph Lane - 2019 - Frontiers in Behavioral Neuroscience 13.
    Patient suffering of major depressive disorder (MDD) often complain that subjective time seems to “drag” with respect to physical time. This may point toward a generalized dysfunction of temporal processing in MDD. In the present study, we investigated temporal preparation in MDD. “Temporal preparation” refers to an increased readiness to act before an expected event; consequently, reaction time should be reduced. MDD patients and age-matched controls were required to make a saccadic eye movement between a central and an eccentric visual (...)
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  12.  31
    From local to global and back: An exploratory study on cross-scale desynchronization in schizophrenia and its relation to thought disorders.Timothy Joseph Lane - 2021 - Schizophrenia Research 231:10-12.
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  13. intrinsic neural activity predisposes susceptibility to a body illusion.Timothy Joseph Lane - 2022 - Cerebral Cortex 1 (3):1-12.
    Susceptibility to the rubber hand illusion (RHI) varies. To date, however, there is no consensus explanation of this variability. Previous studies, focused on the role of multisensory integration, have searched for neural correlates of the illusion. But those studies have failed to identify a sufficient set of functionally specific neural correlates. Because some evidence suggests that frontal α power is one means of tracking neural instantiations of self, we hypothesized that the higher the frontal α power during the eyes-closed resting (...)
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  14. Intrinsic brain activity of subcortical-cortical sensorimotor system and psychomotor alterations in schizophrenia and bipolar disorder.Timothy Joseph Lane - 2020 - Schizophrenia Research 215.
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  15. What Subjective Experiences Determine the Perception of Falling Asleep During the Sleep Onset Period?C. M. Yang & Timothy Lane - 2010 - Consciousness and Cognition 19 (4):1084-1092.
    Sleep onset is associated with marked changes in behavioral, physiological, and subjective phenomena. In daily life though subjective experience is the main criterion in terms of which we identify it. But very few studies have focused on these experiences. This study seeks to identify the subjective variables that reflect sleep onset. Twenty young subjects took an afternoon nap in the laboratory while polysomnographic recordings were made. They were awakened four times in order to assess subjective experiences that correlate with the (...)
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  16. Why and Where to Fund Carbon Capture and Storage.Kian Mintz-Woo & Joe Lane - 2021 - Science and Engineering Ethics 27 (6):70.
    This paper puts forward two claims about funding carbon capture and storage. The first claim is that there are moral justifications supporting strategic investment into CO2 storage from global and regional perspectives. One argument draws on the empirical evidence which suggests carbon capture and storage would play a significant role in a portfolio of global solutions to climate change; the other draws on Rawls' notion of legitimate expectations and Moellendorf's Anti-Poverty principle. The second claim is that where to pursue this (...)
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  17.  59
    DLPFC-PPC-cTBS effects on metacognitive awareness.Antonio Martin & Timothy J. Lane - 2023 - Cortex 167:41-50.
    Background Neuroimaging and lesion studies suggested that the dorsolateral prefrontal and posterior parietal cortices mediate visual metacognitive awareness. The causal evidence provided by non-invasive brain stimulation, however, is inconsistent. -/- Objective/hypothesis Here we revisit a major figure discrimination experiment adding a new Kanizsa figure task trying to resolve whether bilateral continuous theta-burst transcranial magnetic stimulation (cTBS) over these regions affects perceptual metacognition. Specifically, we tested whether subjective visibility ratings and/or metacognitive efficiency are lower when cTBS is applied to these two (...)
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  18. Spontaneous activity in default-mode network predicts ascriptions of self-relatedness to stimuli.Pengmin Qin, Georg Northoff, Timothy Lane & et al - 2016 - Social Cognitive and Affective Neuroscience:xx-yy.
    Spontaneous activity levels prior to stimulus presentation can determine how that stimulus will be perceived. It has also been proposed that such spontaneous activity, particularly in the default-mode network (DMN), is involved in self-related processing. We therefore hypothesised that pre-stimulus activity levels in the DMN predict whether a stimulus is judged as self-related or not. Method: Participants were presented in the MRI scanner with a white noise stimulus that they were instructed contained their name or another. They then had to (...)
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  19. Switching to the rubber hand.S. L. Yeh & Timothy Joseph Lane - 2017 - Frontiers in Psychology 8.
    Inducing the rubber hand illusion (RHI) requires that participants look at an imitation hand while it is stroked in synchrony with their occluded biological hand. Previous explanations of the RHI have emphasized multisensory integration, and excluded higher cognitive functions. We investigated the relationship between the RHI and higher cognitive functions by experimentally testing task switch (as measured by switch cost) and mind wandering (as measured by SART score); we also included a questionnaire for attentional control that comprises two subscales, attention-shift (...)
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  20. GABAA Receptor Deficits Predict Recovery in Patients With Disorders of Consciousness: A Preliminary Multimodal [11C]Flumazenil PET and fMRI Study.Pengmin Qin, Georg Northoff, Timothy Lane & et al - 2015 - Human Brain Mapping:DOI: 10.1002/hbm.22883.
    Disorders of consciousness (DoC)—that is, unresponsive wakefulness syndrome/vegetative state and minimally conscious state—are debilitating conditions for which no reliable markers of consciousness recovery have yet been identified. Evidence points to the GABAergic system being altered in DoC, making it a potential target as such a marker.
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  21. Higher-order thought and pathological self: The case of somatoparaphrenia.Caleb Liang & Timothy Lane - 2009 - Analysis 69 (4):661-668.
    According to Rosenthal’s Higher-Order Thought (HOT) theory of consciousness, first-order mental states become conscious only when they are targeted by HOTs that necessarily represent the states as belonging to self. On this view a state represented as belonging to someone distinct from self could not be a conscious state. Rosenthal develops this view in terms of what he calls the ‘thin immunity principle’ (TIP). According to TIP, when I experience a conscious state, I cannot be wrong about whether it is (...)
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  22.  60
    Depressive rumination is correlated with brain responses during self-related processing.Tzu-Yu Hsu & Timothy J. Lane - 2021 - Journal of Psychiatry and Neuroscience 46:E518-E527.
    Background: Rumination, a tendency to focus on negative self-related thoughts, is a central symptom of depression. Studying the self-related aspect of such symptoms is challenging because of the need to distinguish self effects from the emotional content of task stimuli. This study employed an emotionally neutral self-related paradigm to investigate possible altered self-processing in depression and its link to rumination. Methods: People with major depressive disorder (n = 25) and controls (n = 25) underwent task-based electro-encephalogram recording. We studied late (...)
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  23. Toward an explanatory framework for mental ownership.Timothy Lane - 2012 - Phenomenology and the Cognitive Sciences 11 (2):251-286.
    Philosophical and scientific investigations of the proprietary aspects of self—mineness or mental ownership—often presuppose that searching for unique constituents is a productive strategy. But there seem not to be any unique constituents. Here, it is argued that the “self-specificity” paradigm, which emphasizes subjective perspective, fails. Previously, it was argued that mode of access also fails to explain mineness. Fortunately, these failures, when leavened by other findings (those that exhibit varieties and vagaries of mineness), intimate an approach better suited to searching (...)
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  24. Review of: Philosophy and Psychiatry: Problems, Intersections, and New Perspectives. [REVIEW]Lane Timothy - 2017 - Notre Dame Philosophical Review 16:1-6.
    If we already had a periodic table of mental illness in hand, there would be less need for a book of this type. Although some psychiatrists do think of themselves as chemists, the analogy is without warrant. Not only does psychiatry lack an analogue of the periodic table, its principal tool -- the Diagnostic and Statistical Manual of Mental Disorders (DSM) -- is a contentious document. Even subsequent to the publication of DSM-III in 1980, which was intended to serve as (...)
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  25. Self-Consciousness and Immunity.Timothy Lane & Caleb Liang - 2011 - Journal of Philosophy 108 (2):78-99.
    Sydney Shoemaker, developing an idea of Wittgenstein’s, argues that we are immune to error through misidentification relative to the first-person pronoun. Although we might be liable to error when “I” (or its cognates) is used as an object, we are immune to error when “I” is used as a subject (as when one says, “I have a toothache”). Shoemaker claims that the relationship between “I” as-subject and the mental states of which it is introspectively aware is tautological: when, say, we (...)
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  26. Self, belonging, and conscious experience: A critique of subjectivity theories of consciousness.Timothy Lane - 2015 - In Rocco Gennaro (ed.), Disturbed consciousness: New essays on psychopathology and theories of consciousness. MIT Press. pp. 103-140.
    Subjectivity theories of consciousness take self-reference, somehow construed, as essential to having conscious experience. These theories differ with respect to how many levels they posit and to whether self-reference is conscious or not. But all treat self-referencing as a process that transpires at the personal level, rather than at the subpersonal level, the level of mechanism. -/- Working with conceptual resources afforded by pre-existing theories of consciousness that take self-reference to be essential, several attempts have been made to explain seemingly (...)
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  27. Semantic dispositionalism and the rule‐following paradox.Elek Lane - 2022 - Metaphilosophy 53 (5):685-695.
    In virtue of what does a sign have meaning? This is the question raised by Wittgenstein's rule-following considerations. Semantic dispositionalism is a (type of) theory that purports to answer this question. The present paper argues that semantic dispositionalism faces a heretofore unnoticed problem, one that ultimately comes down to its reliance on unanalyzed notions of repeated types of signs. In the context of responding to the rule-following paradox—and offering a putative solution to it—this amounts to simply assuming a solution to (...)
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  28. Attention and memory-driven effects in action studies.Philip Tseng, Timothy Lane & Bruce Bridgeman - 2016 - Behavioral and Brain Sciences 39.
    : We provide empirical examples to conceptually clarify some items on Firestone & Scholl’s (F&S’s) checklist, and to explain perceptual effects from an attentional and memory perspective. We also note that action and embodied cognition studies seem to be most susceptible to misattributing attentional and memory effects as perceptual, and identify four characteristics unique to action studies and possibly responsible for misattributions.
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  29. When actions feel alien: An explanatory model.Timothy Lane - 2014 - In Tzu-Wei Hung (ed.), Communicative Action. Springer Science+Business. pp. 53-74.
    It is not necessarily the case that we ever have experiences of self, but human beings do regularly report instances for which self is experienced as absent. That is there are times when body parts, mental states, or actions are felt to be alien. Here I sketch an explanatory framework for explaining these alienation experiences, a framework that also attempts to explain the “mental glue” whereby self is bound to body, mind, or action. The framework is a multi-dimensional model that (...)
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  30. Existentialism: A Reconstruction.David E. Cooper - 1990 - Malden, Mass.: Wiley-Blackwell.
    First published in 1990, _Existentialism_ is widely regarded as a classic introductory survey of the topic, and has helped to renew interest in existentialist philosophy. The author places existentialism within the great traditions of philosophy, and argues that it deserves as much attention from analytic philosophers as it has always received on the continent.
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  31. Causal Inference from Noise.Nevin Climenhaga, Lane DesAutels & Grant Ramsey - 2021 - Noûs 55 (1):152-170.
    "Correlation is not causation" is one of the mantras of the sciences—a cautionary warning especially to fields like epidemiology and pharmacology where the seduction of compelling correlations naturally leads to causal hypotheses. The standard view from the epistemology of causation is that to tell whether one correlated variable is causing the other, one needs to intervene on the system—the best sort of intervention being a trial that is both randomized and controlled. In this paper, we argue that some purely correlational (...)
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  32. Excursus on Wittgenstein's Rule-Following Considerations.Elek Lane - 2017 - Nordic Wittgenstein Review 6 (1):53-83.
    In this essay, I seek to demonstrate the interplay of philosophical voices – particularly, that of a platonist voice and a community-agreement-view voice – that drives Wittgenstein’s rule-following dialectic forward; and I argue that each voice succumbs to a particular form of dialectical oscillation that renders its response to the problem of rule-following philosophically inadequate. Finally, I suggest that, by seeing and taking stock of the dilemma in which these responses to the skeptical problem are caught, we can come to (...)
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  33.  90
    The minimal self hypothesis.Timothy Lane - 2020 - Consciousness and Cognition 85:103029.
    For millennia self has been conjectured to be necessary for consciousness. But scant empirical evidence has been adduced to support this hypothesis. Inconsistent explications of “self” and failure to design apt experiments have impeded progress. Advocates of phenomenological psychiatry, however, have helped explicate “self,” and employed it to explain some psychopathological symptoms. In those studies, “self” is understood in a minimalist sense, sheer “for-me-ness.” Unfortunately, explication of the “minimal self” (MS) has relied on conceptual analysis, and applications to psychopathology have (...)
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  34. Mental Ownership and Higher Order Thought.Timothy Lane & Caleb Liang - 2010 - Analysis 70 (3):496-501.
    Mental ownership concerns who experiences a mental state. According to David Rosenthal (2005: 342), the proper way to characterize mental ownership is: ‘being conscious of a state as present is being conscious of it as belonging to somebody. And being conscious of a state as belonging to somebody other than oneself would plainly not make it a conscious state’. In other words, if a mental state is consciously present to a subject in virtue of a higher-order thought (HOT), then the (...)
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  35. Buddhism, Beauty, and Virtue.David Cooper - 2017 - In Kathleen J. Higgins, Shakti Maira & Sonia Sikka (eds.), Artistic Visions and the Promise of Beauty: Cross-Cultural Perspectives. Springer. pp. 123-138.
    The chapter challenges hyperbolic claims about the centrality of appreciation of beauty to Buddhism. Within the texts, attitudes are more mixed, except for a form of 'inner beauty' - the beauty found in the expression of virtues or wisdom in forms of bodily comportment. Inner beauty is a stable presence throughout Buddhist history, practices, and art.
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  36. The trajectory of self.Timothy Lane, Niall W. Duncan, Tony Cheng & Georg Northoff - 2016 - Trends in Cognitive Sciences 20 (7):481-482.
    In a recent Opinion article, Sui and Humphreys [1] argue that experimental findings suggest self is ‘special’, in that self-reference serves a binding function within human cognitive economy. Contrasting their view with other functionalist positions, chiefly Dennett's [2], they deny that self is a convenient fiction and adduce findings to show that a ‘core self representation’ serves as an ‘integrative glue’ helping to bind distinct types of information as well as distinct stages of psycho- logical processing. In other words, where (...)
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  37. Trans as Bodily Becoming: Rethinking the Biological as Diversity, Not Dichotomy.Riki Lane - 2008 - Hypatia 24 (3):136 - 157.
    Feminist and trans theory challenges "the" binary sex/gender system, but can create a new binary opposition of subversive transgender versus conservative transsexual. This paper aims to shift debate concerning bodies as authentic/real versus constructed/mutable, arguing that such debate establishes a false dichotomy that may be overcome by reappraising scientific understandings of sex/gender. Much recent biology and neurology stresses nonlinearity, contingency, self-organization, and open-endedness. Engaging with this research offers ways around apparently interminable theoretical impasses.
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  38. Higher Order Thought and the Problem of Radical Confabulation.Timothy Lane & Caleb Liang - 2008 - Southern Journal of Philosophy 46 (1):69-98.
    Currently, one of the most influential theories of consciousness is Rosenthal's version of higher-order-thought (HOT). We argue that the HOT theory allows for two distinct interpretations: a one-component and a two-component view. We further argue that the two-component view is more consistent with his effort to promote HOT as an explanatory theory suitable for application to the empirical sciences. Unfortunately, the two-component view seems incapable of handling a group of counterexamples that we refer to as cases of radical confabulation. We (...)
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  39.  75
    Eyes-Open and Eyes-Closed Resting State Network Connectivity Differences.Junrong Han & Timothy Joseph Lane - 2023 - Brain Sciences 13.
    Resting state networks comprise several brain regions that exhibit complex patterns of interaction. Switching from eyes closed (EC) to eyes open (EO) during the resting state modifies these patterns of connectivity, but precisely how these change remains unclear. Here we use functional magnetic resonance imaging to scan healthy participants in two resting conditions (viz., EC and EO). Seven resting state networks were chosen for this study: salience network (SN), default mode network (DMN), central executive network (CEN), dorsal attention network (DAN), (...)
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  40. Perils of the Open Road.William Lane Craig & David P. Hunt - 2013 - Faith and Philosophy 30 (1):49-71.
    Open theists deny that God knows future contingents. Most open theists justify this denial by adopting the position that there are no future contingent truths to be known. In this paper we examine some of the arguments put forward for this position in two recent articles in this journal, one by Dale Tuggy and one by Alan Rhoda, Gregory Boyd, and Thomas Belt. The arguments concern time, modality, and the semantics of ‘will’ statements. We explain why we find none of (...)
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  41. Rationality and its contexts.Timothy Lane - 2016 - In Timothy Joseph Lane & Tzu-Wei Hung (eds.), Rationality: Constraints and Contexts. London, U.K.: Elsevier Academic Press. pp. 3-13.
    A cursory glance at the list of Nobel Laureates for Economics is sufficient to confirm Stanovich’s description of the project to evaluate human rationality as seminal. Herbert Simon, Reinhard Selten, John Nash, Daniel Kahneman, and others, were awarded their prizes less for their work in economics, per se, than for their work on rationality, as such. Although philosophical works have for millennia attempted to describe, explicate and evaluate individual and collective aspects of rationality, new impetus was brought to this endeavor (...)
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  42. A Hypothesis of Extraterrestrial Behavior (2nd edition).William C. Lane - manuscript
    Developments that suggest the universe is full of life make the Fermi paradox increasingly pressing, but our search for an extraterrestrial technological civilization (“ETC”) is handicapped by our ignorance of its probable nature and behavior. This paper offers a way around this problem by drawing on information theoretical concepts, including game theory and Bayesian probability. It argues that, whatever its ultimate goals, an ETC would have the same instrumental goals as other intelligent agents. Generically, these are self-preservation and the acquisition (...)
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  43. Resolution in §201 of the Philosophical Investigations.Elek Lane - 2020 - Australasian Journal of Philosophy 98 (2):393-402.
    It is widely thought that, in §201 of the Philosophical Investigations, Wittgenstein reveals himself to oppose a definite view or theory of rule-following. I argue that, due to the self-undermining character of that section, no such interpretation should be accepted. Then I sketch a reading of Wittgenstein’s method that accounts for the paradoxical nature of §201, and I show how this methodology is realized in his remarks on following a rule.
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  44. The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin L. Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud & Pankaj Jaiswal - 2018 - Nucleic Acids Research 46 (D1):D1168–D1180.
    The Planteome project provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology, and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides (...)
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  45. Neuroexistentialism, Eudaimonics, and Positive Illusions.Timothy Lane & Owen Flanagan - forthcoming - In Byron Kaldis (ed.), Mind and Society: Cognitive Science Meets the Philosophy of the Social Sciences. SYNTHESE Philosophy Library Studies in Epistemology, Logic, Methodology, & Philosophy of Science. Springer Science+Business.
    There is a distinctive form of existential anxiety, neuroexistential anxiety, which derives from the way in which contemporary neuroscience provides copious amounts of evidence to underscore the Darwinian message—we are animals, nothing more. One response to this 21st century existentialism is to promote Eudaimonics, a version of ethical naturalism that is committed to promoting fruitful interaction between ethical inquiry and science, most notably psychology and neuroscience. We argue that philosophical reflection on human nature and social life reveals that while working (...)
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  46. Is depressive rumination rational?Timothy Lane & Georg Northoff - 2016 - In Timothy Joseph Lane & Tzu-Wei Hung (eds.), Rationality: Constraints and Contexts. London, U.K.: Elsevier Academic Press. pp. 121-145.
    Most mental disorders affect only a small segment of the population. On the reasonable assumption that minds or brains are prone to occasional malfunction, these disorders do not seem to pose distinctive explanatory problems. Depression, however, because it is so prevalent and costly, poses a conundrum that some try to explain by characterizing it as an adaptation—a trait that exists because it performed fitness-enhancing functions in ancestral populations. Heretofore, proposed evolutionary explanations of depression did not focus on thought processes; instead, (...)
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  47. The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.Laurel Cooper, Ramona Walls, Justin Elser, Maria A. Gandolfo, Dennis W. Stevenson, Barry Smith & Others - 2013 - Plant and Cell Physiology 54 (2):1-23..
    The Plant Ontology (PO; http://www.plantontology.org/) is a publicly-available, collaborative effort to develop and maintain a controlled, structured vocabulary (“ontology”) of terms to describe plant anatomy, morphology and the stages of plant development. The goals of the PO are to link (annotate) gene expression and phenotype data to plant structures and stages of plant development, using the data model adopted by the Gene Ontology. From its original design covering only rice, maize and Arabidopsis, the scope of the PO has been expanded (...)
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  48. Living with Mystery: Virtue, Truth, and Practice.David E. Cooper - 2012 - European Journal for Philosophy of Religion 4 (3):1--13.
    This paper examines how a person’s life may be shaped by living with a sense of the mystery of reality. What virtues, if any, are encouraged by such a sense? The first section rehearses a radical ”doctrine of mystery’, according to which reality as it anyway is, independently of human perspectives, is ineffable. It is then argued that a sense of mystery may provide ”measure’ for human lives. For it is possible for a life to be ”consonant’ with this sense (...)
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  49. Readings of “Consciousness”: Hegel’s Phenomenology of Spirit.Agemir Bavaresco, Andrew Cooper, Andrew J. Latham & Thomas Raysmith - 2014 - Journal of General Philosophy 1 (1):15-26.
    This paper walks through four different approaches to Hegel's notion of Consciousness in the Phenomenology of Spirit. Through taking four different approaches our aim is to explore the multifaceted nature of the phenomenological movement of consciousness. The first part provides an overview of the three chapters of the section on Consciousness, namely Sense-Certainty, Perception and Force and the Understanding, attempting to unearth the implicit logic that undergirds Consciousness’ experience. The second part focuses specifically on the shape of Sense-Certainty, providing an (...)
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  50. Living God Pandeism: Evidential Support.William C. Lane - 2021 - Zygon 56 (3):566-590.
    Pandeism is the belief that God chose to wholly become our Universe, imposing principles at this Becoming that have fostered the lawful evolution of multifarious structures, including life and consciousness. This article describes and defends a particular form of pandeism: living God pandeism (LGP). On LGP, our Universe inherits all of God's unsurpassable attributes—reality, unity, consciousness, knowledge, intelligence, and effectiveness—and includes as much reality, conscious and unconscious, as is possible consistent with retaining those attributes. God and the Universe, together “God-and-Universe,” (...)
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