Evolutionary psychology presupposes relations between theories of different domains that the two traditional models, reduction and autonomy, cannot properly account for. We aim to construct a model of relations between theories that succeeds where traditional models fail. We show that the multiple realizability argument, on which the autonomist model is thought to rest, is compatible with reductionism and, following Kim, that an autonomist reading of the argument deprives psychology of its scientific status. We therefore opt for a reductionist model compatible (...) with functionalism and multiple realizability, but show that, within evolutionary psychology at least, the very application of the conditions of reduction requires strong interactions between psychology and various other adjacent disciplines. We also show that reduction must be preceded in evolutionary psychology by an of the reduction base, which brings still other disciplines into play. Finally, we present a model of the interaction between disciplines we believe accounts best for these relations and discuss the problems facing this kind of enterprise. (shrink)

It has been argued that most truths about macroscopic states of affairs are entailed by a (hypothetical) complete descriptionPof the world in microscopic terms. In principle, micro-reductive explanations of non-microphysical truths could be constructeda priori.Against this claim, I show that reductive explanation requires knowledge about the phenomena to be reduced which cannot bea prioriextracted from microphysical information alone. Such reductions proceed in two steps: a “reductionR0” (“role-occupant”) establishes that a macroproperty M plays a certain causal role (specified in macro-terms), while (...) a “reductionMM” (“micro-macro”) establishes that some microproperty gives rise toM. (shrink)

In this essay, I explore a metaphor in geometry for the debate between the unity and the disunity of science, namely, the possibility of putting a global coordinate system (or a chart) on a manifold. I explain why the former is a good metaphor that shows what it means (and takes in principle) for science to be unified. I then go through some of the existing literature on the unity/disunity debate and show how the metaphor sheds light on some of (...) the views and arguments. (shrink)

My main aim in this paper is to show that influential antireductionist arguments such as Fodor's, Kitcher's, and Dupré's state stronger conclusions than they actually succeed in establishing. By putting to the fore the role of metaphysical presuppositions in these arguments, I argue that they are convincing only as 'temporally qualified argument', and not as 'generally valid ones'. I also challenge the validity of the strategy consisting in drawing metaphysical lessons from the failure of reductionist programmes. What most of these (...) antireductionist standpoints have in common is a pretension to methodological imports. I conclude by explaining why, in order to remain relevant for scientific practice, antireductionist arguments should stay clear of metaphysics, for the latter, I argue, does not mix well with a taste for methodological prescriptions. (shrink)

Why has it been so difficult to integrate paleontology and mainstream evolutionary biology? Two common answers are: (1) the two fields have fundamentally different aims, and (2) the tensions arise out of disciplinary squabbles for funding and prestige. This paper examines the role of fossil data in phylogeny reconstruction in order to assess these two explanations. I argue that while cladistics has provided a framework within which to integrate fossil character data, the stratigraphic (temporal) component of fossil data has been (...) harder to integrate. A close examination of how fossil data have been used in phylogeny reconstruction suggests that neither explanation is adequate. While some of the tensions between the fields may be intellectual turf wars, the second explanation downplays the genuine difficulty of combining the distinctive data of the two fields. Furthermore, it is simply not the case that the two fields pursue completely distinct aims. Systematists do disagree about precisely how to represent phylogeny (e.g., minimalist cladograms or trees with varying levels of detail) but given that every tree presupposes a pattern of branching (a cladogram), these aims are not completely distinct. The central problem has been developing methods that allow scientists to incorporate the distinctive bodies of data generated by these two fields. Further case studies will be required to determine if this explanation holds for other areas of interaction between paleontology and neontology. (shrink)

In his 'The Disorder of Things' John Dupré presents an objection to reductionism which I call the 'anti-essentialist objection': it is that reductionism requires essentialism, and essentialism is false. I unpack the objection and assess its cogency. Once the objection is clearly in view, it is likely to appeal to those who think conceptual analysis a bankrupt project. I offer on behalf of the reductionist two strategies for responding, one which seeks to rehabilitate conceptual analysis and one (more concessive) which (...) avoids commitment to any such analysis. (shrink)

I critically evaluate Bickle’s version of scientific theory reduction. I press three main points. First, a small point, Bickle modifies the new wave account of reduction developed by Paul Churchland and Clifford Hooker by treating theories as set-theoretic structures. But that structuralist gloss seems to lose what was distinctive about the Churchland-Hooker account, namely, that a corrected theory must be specified entirely by terms and concepts drawn from the basic reducing theory. Set-theoretic structures are not terms or concepts but the (...) structures that they describe. Second, and more serious, a familiar problem for classical positivist account of reduction resurfaces within this newest wave of thinking, namely, commitment to property identities and inter-theoretic bridge laws (a problem I discussed at more length in "Collapse of the New Wave"). Indeed, this problem is exacerbated by Bickle’s conciliatory treatment of property plasticity, since he is willing to grant that a large number of special science terms denote multiply realized properties, at least if realistically construed. Still, in the end, Bickle sidesteps the reduction of properties by appealing to Hooker’s "function-to-structure token reduction." This is an interesting move with an intriguing concept of reduction. But problems remain. For, third, Bickle and Hooker's function-to-structure token reduction is actually a guised form of eliminative materialism. But that should be unacceptable since the position extends well beyond any modest revisionism for suspect items from a folk theory, say, in folk psychology or folk biology. Instead, it applies to functional terms and concepts employed throughout well-developed and explanatorily successful sciences. (shrink)

In this paper I pour a little cold water on claims of global supervenience, not by arguing that they are false, and not by arguing that they possess no philosophical utility whatsoever, but by building a case for the following conditional conclusion: if you expect claims of global supervenience to play a certain role in a certain metaphysical project, then you will be disappointed, since they cannot play such a role. The metaphysical project is to give an illuminating and suitably (...) physicalist account of the relations between properties instantiated at different levels of reality. The paper makes a prima facie case for holding that claims of global supervenience can provide no illumination in such an account, a case that emerges when the metaphysics of global supervenience is probed a little more deeply than is customary. (shrink)

The present work is focussed on the completeness of physics, or what is here called the Completeness Thesis: the claim that the domain of the physical is causally closed. Two major questions are tackled: How best is the Completeness Thesis to be formulated? What can be said in defence of the Completeness Thesis? My principal conclusions are that the Completeness Thesis can be coherently formulated, and that the evidence in favour if it significantly outweighs that against it. In opposition to (...) those who argue that formulation is impossible because no account of what is to count as physical can be provided, I argue that as long as the purpose of the argument in which the account is to be used are borne in mind there are no significant difficulties. The account of the physical which I develop holds as physical whatever is needed to fix the likelihood of pre-theoretically given physical effects, and hypothesises in addition that no chemical, biological or psychological factors will be needed in this way. The thus formulated Completeness Thesis is coherent, and has significant empirical content. In opposition to those who defend the doctrine of emergentism by means of philosophical arguments I contend that those arguments are flawed, setting up misleading dichotomies between needlessly attenuated alternatives and assuming the truth of what is to be proved. Against those who defend emergentism by appeal to the evidence, I argue that the history of science since the nineteenth century shows clearly that the empirical credentials of the view that the world is causally closed at the level of a small number of purely physical forces and types of energy is stronger than ever, and the credentials of emergentism correspondingly weaker. In opposition to those who argue that difficulties with reductionism point to the implausibility of the Completeness Thesis I argue that completeness in no way entails the kinds of reductionism which give rise to the difficulties in question. I argue further that the truth of the Completeness Thesis is in fact compatible with a great deal of taxonomic disorder and the impossibility of any general reduction of non-fundamental descriptions to fundamental ones. In opposition to those who argue that the epistemological credentials of fundamental physical laws are poor, and that those laws should in fact be seen as false, I contend that truth preserving accounts of fundamental laws can be developed. Developing such an account, I test it by considering cases of the composition of forces and causes, where what takes place is different to what is predicted by reference to any single law, and argue that viewing laws as tendencies allows their truth to be preserved, and sense to be made of both the experimental discovery of laws, and the fact that composition enables accurate prediction in at least some cases. (shrink)

Two ways are considered of formulating a version of retentive physicalism, the view that in some important sense everything is physical, even though there do exist properties, e.g. higher-level scientific ones, which cannot be type-identified with physical properties. The first way makes use of disjunction, but is rejected on the grounds that the results yield claims that are either false or insufficiently materialist. The second way, realisation physicalism, appeals to the correlative notions of a functional property and its realisation, and (...) states, roughly, that any actual property whatsoever is either itself a physical property or else is, ultimately, realised by instances of physical properties. Realisation physicalism is distinctive since it makes no claims of identity whatsoever, and involves no appeal to the dubious concept of supervenience. After an attempt to formulate realisation physicalism more precisely, I explore a way in which, in principle, we could obtain evidence of its truth. (shrink)

Unity of science was once a very popular idea among both philosophers and scientists. But it has fallen out of fashion, largely because of its association with reductionism and the challenge from multiple realisation. Pluralism and the disunity of science are the new norm, and higher-level natural kinds and special science laws are considered to have an important role in scientific practice. What kind of reductionism does multiple realisability challenge? What does it take to reduce one phenomenon to another? How (...) do we determine which kinds are natural? What is the ontological basis of unity? In this Element, Tuomas Tahko examines these questions from a contemporary perspective, after a historical overview. The upshot is that there is still value in the idea of a unity of science. We can combine a modest sense of unity with pluralism and give an ontological analysis of unity in terms of natural kind monism. This title is available as Open Access on Cambridge Core. (shrink)

The debate between the defenders of explanatory unification and explanatory pluralism has been ongoing from the beginning of cognitive science and is one of the central themes of its philosophy. Does cognitive science need a grand unifying theory? Should explanatory pluralism be embraced instead? Or maybe local integrative efforts are needed? What are the advantages of explanatory unification as compared to the benefits of explanatory pluralism? These questions, among others, are addressed in this Synthese’s special issue. In the introductory paper, (...) we discuss the background of the questions, distinguishing integrative theorizing from building unified theories. On the one hand, integrative efforts involve collaboration between various disciplines, fields, approaches, or theories. These efforts could even be quite temporary, without establishing any long-term institutionalized fields or disciplines, but could also contribute to developing new interfield theories. On the other hand, unification can rely on developing complete theories of mechanisms and representations underlying all cognition, as Newell’s “unified theories of cognition”, or may appeal to grand principles, as predictive coding. Here, we also show that unification in contemporary cognitive science goes beyond reductive unity, and may involve various forms of joint efforts and division of explanatory labor. This conclusion is one of the themes present in the content of contributions constituting the special issue. (shrink)

This is a thesis about interdisciplinarity, scientific integration, and problem solving in sustainability science. Sustainability science is an emerging and highly interdisciplinary field that seeks to integrate vastly differentiated bodies of knowledge in addressing the challenge of transitioning contemporary societies towards sustainability. Interdisciplinarity is paramount. Interdisciplinarity in general, and in the context of sustainability science in particular, has often been associated with solving particular problems and problem solving is one important theme in this thesis. A central idea that is developed (...) is that of problem-feeding. Sometimes problems arise within one discipline that can only be solved with the help of another. This concept, that has predecessors in e.g. the work of Lindley Darden and Nancy Maull, is explored considerably. It is argued that in interdisciplinary contexts—such as sustainability science—where collaboration is sought it is important to maintain cross-boundary problem stability. That is to say, as the problem is transferred from one discipline to another transformations will often be necessary. These transformations then, need to be acceptable to all involved parties to maintain an active interdisciplinary connection. Another topic that is discussed both in the introductory essay and some of the papers included is that of scientific imperialism. Scientific imperialism—the infringement of one discipline upon the domain of another—is here suggested to be primarily a threat to in-terdisciplinary collaborations. A distinction is introduced between imperialist failures of expansionism and failures of replacement. These are labelled type-I and type-II imperialism respectively. Particular attention is devoted to the latter form. Type-II imperialism concerns cases where imperialist infringements fail as the imperial- izing framework replaces viable, or compatible alternatives. Such an error of replacement does, importantly, not imply that the framework or theory should be disregarded completely. This type of imperialist error can both be quite subtle, and damaging. For one, if one directs the attention to specific contexts knowledge is actually lost in the process. This is particularly serious in fields such as sustainability science that are, to such an large extent, aimed at influencing concrete policy. Finally, interdisciplinarity is difficult to achieve and in many cases represents a grand challenge in itself. There are however many different ways in which interdisciplinarity may be accomplished and different forms are suitable in different contexts. In a field such as sustainability science where complexity is such a prevalent feature, an inclusive, pluralist, approach is likely to be appropriate. (shrink)

Biochemical kinds such as proteins pose interesting problems for philosophers of science, as they can be studied from the points of view of both biology and chemistry. The relationship between the biological functions of biochemical kinds and the microstructures that they are related to is the key question. This leads us to a more general discussion about ontological reductionism, microstructuralism, and multiple realization at the biology-chemistry interface. On the face of it, biochemical kinds seem to pose a challenge for ontological (...) reductionism and hence motivate a dual theory of chemical and biological kinds, a type of pluralism about natural kinds. But it will be argued that the challenge, which is based on multiple realization, can be addressed. The upshot is that there are reasonable prospects for ontological reductionism about biochemical kinds, which corroborates natural kind monism. (shrink)

In this paper I argue that non-reductive physicalism (NRP) continues to rely on the ontological aspect of the layer cake model of the world (LCM). NRP is a post-unity account of the relationship between phenomena in the world in the sense that it has been developed in response to the perceived failure of the unity of science thesis. The LCM constitutes a framework for the organisation of phenomena in the world. It articulates the idea that phenomena in the world are (...) organised into levels. Specifically, that phenomena are layered into distinct, hierarchical levels of organisation. Historically, the unity of science thesis and the LCM have been intertwined; the LCM being the framework within which a unity of science might be possible. My argument will demonstrate that, despite a move away from unity of science positions, the LCM persists in post-unity accounts. In order to argue for this thesis, I present a close analysis of Oppenheim & Putnam’s classic presentation of the LCM; picking out the principle of hierarchic compositionality which, I argue, captures the ontological aspect of the LCM. I then demonstrate how NRP continues to rely upon the principle and, as a result, continues to support the ontological aspect of the LCM. This result is significant. It shows that whilst the rejection of the reductionist aspect of the thesis has served as the basis for post-unity positions these positions do not engage directly with the framework within which reduction might be facilitated – the LCM. Furthermore, it demonstrates that pluralist or disunity accounts of the relationship between phenomena in the world will also have to engage directly with the framework of the LCM in order to avoid being merely anti-reductionist. (shrink)

Despite the ubiquity of “levels of organization” in the scientific literature, a nascent “levels skepticism” now claims that the concept of levels is an inherently flawed, misleading, or otherwise inadequate notion for understanding how life scientists produce knowledge about the natural world. However, levels skeptics rely on the maligned “layer-cake” account of levels stemming from Oppenheim and Putnam’s defense of the unity of science for their critical commentary. Recourse to layer-cake levels is understandable, as it is arguably the default conception (...) of levels in philosophy. However, relying on this conception of levels undermines the initial plausibility of general dismissals of the concept, because the problems skeptics identify within the “basic idea” of the concept “levels” are merely ones already widely acknowledged in this conception. I illustrate this “guilt by association” by looking at the embedded role of “levels” in articulating intertheoretical reductionism during the latter part of the 20th century. I conclude by suggesting a methodological framework focusing on local usage patterns as a promising means for future analysis of the levels concept. (shrink)

Some explanations in social science, psychology and biology belong to a higher level than other explanations. And higher explanations possess the virtue of abstracting away from the details of lower explanations, many philosophers argue. As a result, these higher explanations are irreplaceable. And this suggests that there are genuine higher laws or patterns involving social, psychological and biological states. I show that this ‘abstractness argument’ is really an argument schema, not a single argument. This is because the argument uses the (...) ‘is lower than’ relation, and this relation admits of different readings. I then suggest four rigorous definitions of the ‘is lower than’ relation, and show that the abstractness argument’s prospects are much brighter for some of these definitions than for others. To show this, I evaluate the so-called ‘disjunctive threat’ to the abstractness argument. (shrink)

Some explanations are relatively abstract: they abstract away from the idiosyncratic or messy details of the case in hand. The received wisdom in philosophy is that this is a virtue for any explanation to possess. I argue that the apparent consensus on this point is illusory. When philosophers make this claim, they differ on which of four alternative varieties of abstractness they have in mind. What’s more, for each variety of abstractness there are several alternative reasons to think that the (...) variety of abstractness in question is a virtue. I identify the most promising reasons, and dismiss some others. The paper concludes by relating this discussion to the idea that explanations in biology, psychology and social science cannot be replaced by relatively micro explanations without loss of understanding. (shrink)

Philosophers have traditionally addressed the issue of scientific unification in terms of theoretical reduction. Reductive models, however, cannot explain the occurrence of unification in areas of science where successful reductions are hard to find. The goal of this essay is to analyse a concrete example of integration in biology—the developmental synthesis—and to generalize it into a model of scientific unification, according to which two fields are in the process of being unified when they become explanatorily relevant to each other. I (...) conclude by suggesting that this methodological conception of unity, which is independent of the debate on the metaphysical foundations of science, is closely connected to the notion of interdisciplinarity. 1 Introduction2 Some Troubles with Theory Reduction3 Interfield and Mechanistic Unification4 Foundations of the Developmental Synthesis5 Explanatory Relevance6 Concluding Remarks. (shrink)

Convincing disputes about explanatory reductionism in the philosophy of biology require a clear and precise understanding of what a reductive explanation in biology is. The central aim of this book is to provide such an account by revealing the features that determine the reductive character of a biological explanation. Chapters I-IV provide the ground, on which I can then, in Chapter V, develop my own account of explanatory reduction in biology: Chapter I reveals the meta-philosophical assumptions that underlie my analysis (...) of reduction, Chapter II introduces the previous debate about reduction in the philosophy of biology by pointing out the most crucial lessons one should learn from this debate, Chapter III critically discusses the two perspectives on explanatory reduction that have been proposed in the philosophy of biology so far, and Chapter IV clarifies in what ways the issue of reduction is entangled with the issue of explanation. In Chapter V I present my own account of explanatory reduction. My main claim is that reductive explanations in the biological sciences possess three main characteristics: they explain the behavior of a biological system S, first, exclusively in terms of factors that are located on a lower level of organization than S, second, by focusing on factors that are internal to S , and third, by describing the genuine parts of S only as “parts in isolation”. This account is ontic because it traces the reductivity of an explanation back to certain relations that exist in the world. (shrink)

This paper aims to show that there is a lot of philosophy in the philosophy of chemistry—not only in the problems and questions specific to chemistry, which this science brings up in philosophical discussions, but also in the topics of wider interest like reductionism and emergence, for which chemistry proves to be an ideal case study. The fact that chemical entities and properties are amenable to a quantitative understanding, to measurement and experiment to a greater extent than those in psychology (...) or biology, makes chemistry an ideal case study for those interested in reductionism and emergence. (shrink)

In a recent article in this journal (Foundations of Chemistry, 7 (2005), 125–148) Lombardi and Labarca call into question a thesis of ontological reduction to which several writers on reduction subscribe despite rejecting a thesis of epistemological reduction. Lombardi and Labarca advocate instead a pluralistic ontology inspired by Putnam’s internal realism. I suggest that it is not necessary to go so far, and that a more critical view of the ontological reduction espoused by the authors they criticise circumvents the need (...) to resort to their radical alternative. (shrink)

Token physicalism is often viewed as a modest and unproblematic physicalist commitment, as contrasted with type physicalism. This paper argues that the prevalence of functional individuation in biology creates serious problems for token physicalism, because the latter requires that biological entities can be individuated physically and without reference to biological functioning. After characterizing the main philosophical roles for token physicalism, I describe the distinctive uses of functional individuation in models of biological processes. I then introduce some requirements on token identity (...) claims that arise from a position on individuation and identity known as sortalism. An examination of biological examples shows that these sortalist requirements cannot be plausibly met due to differences between individuation by functional biological criteria and by physical criteria. Even without assuming sortalism, token physicalism faces the more basic problem of excluding functionally irrelevant detail from the individuation of biological tokens. I close by suggesting that the philosophical roles for token identity are better fulfilled by a notion of token composition, which promotes a hierarchical picture of individuality. (shrink)

Traditionally, interdisciplinarity has been taken to require conceptual or theoretical integration. However, in the emerging field of sustainability science this kind of integration is often lacking. Indeed sometimes it is regarded as an obstacle to interdisciplinarity. Drawing on examples from sustainability science, we show that problem-feeding, i.e. the transfer of problems, is a common and fruitful-looking way of connecting disparate disciplines and establishing interdisciplinarity. We identify two species of problem-feeding: unilateral and bilateral. Which of these is at issue depends on (...) whether solutions to the problem are fed back to the discipline in which the problem originated. We suggest that there is an interesting difference between the problem-feeding approach to interdisciplinarity and the traditional integrative perspective suggested by among others Erich Jantsch and his colleagues. The interdisciplinarity resulting from problem-feeding between researchers can be local and temporary and does not require collaboration between proximate disciplines. By contrast, to make good sense of traditional integrative interdisciplinarity we must arguably associate it with a longer-term, global form of close, interdisciplinary collaboration. (shrink)

Convergent scientific realism entails that science will sooner or later arrive at the final theory of the fundamental constituents of matter. At that stage, all fundamental truths about nature will be discovered so that the search for basic principle seems bound to come to a halt. I explore options for a non-convergent scientific realism that allows for sustained progress in basic research. I defend the views that the coherence of non-convergent realism requires an emergence claim and that this claim can (...) be supported. I develop the example of the relation between equivalence classes among biological functions and their physiological realizations. Given strongly emergent laws in the sense elaborated in the paper, progress in basic research may survive the discovery of the laws governing the tinymost parts of matter. (shrink)

Philosophers of science have in recent years become increasingly interested in the notion of interdisciplinarity. One important form interdisciplinarity can take is that of a dynamic exchange of problems and solutions between disciplines—what has recently been called problem-feeding. On this model problems arising within specific disciplines are sometimes solved more effectively by, or in collaboration with, other disciplines. In this paper we explore this model as a framework for thinking about, and actively structuring, interdisciplinary research. We point to the applicability (...) of the problem-feeding model, and to some of the prerequisites of problem-feeding interdisciplinarity, highlighting in particular the harmonisation of goals and the establishment of mutual trust between disciplines. (shrink)

The purpose of this essay is to present and analyse the basic assumptions of Leszek Nowak’s conception of the unity of science. According to Nowak, the unity of science is manifested in the common application of the method of idealisation in scientific research. In accordance with his conception, regardless of the discipline they represent, researchers go through the same stages in building a theory. Two key ones among them are: introducing idealising assumptions into the representation and then their concretisation. In (...) this view, idealisation is the basis of the scientific method, while other cognitive procedures complement it. Nowak’s conception has particular relevance in the context of the dispute between naturalism and anti-naturalism and in the context of the continuing rift between social scientists and natural scientists. It calls into question the anti-naturalist thesis of the ontological uniqueness of social sciences and the resulting methodological consequences. I argue that Nowak’s conception is a cognitively valuable contribution to the contemporary epistemology of science, but it also has weaknesses, mainly due to the limitations of applying the idealisation-concretisation scheme in research practice. For it turns out, as I point out in this essay, that many idealising assumptions are not subject to concretisation and that concretisations do not always condition an increase in the explanatory and/or predictive power of the representations. (shrink)

Critics of multiple realizability have recently argued that we should concentrate solely on actual here-and-now realizations that are found in nature. The possibility of alternative, but unactualized, realizations is regarded as uninteresting because it is taken to be a question of pure logic or an unverifiable scenario of science fiction. However, in the biological context only a contingent set of realizations is actualized. Drawing on recent work on the theory of neutral biological spaces, the paper shows that we can have (...) ways of assessing the modal dimension of multiple realizability that do not have to rely on mere conceivability. (shrink)

Nonreductive physicalism faces serious problems regarding causal exclusion, causal heterogeneity, and the nature of realization. In this paper I advance solutions to each of those problems. The proposed solutions all depend crucially on embracing modal counterpart theory. Hence, the paper’s thesis: counterpart theory saves nonreductive physicalism. I take as my inspiration the view that mental tokens are constituted by physical tokens in the same way statues are constituted by lumps of clay. I break from other philosophers who have pursued this (...) line, however, in that I hold that constitution is identity. Much of the value of the comparison to statues and lumps is that it calls to mind the resources used to defend constitution-as-identity, most notably that of counterpart theory. Along the way, I discuss the virtues of a trope ontology, modal objections to token identity theories, the prospects of conditional analyses of causal powers, the subset account of realization, and the grounding problem. I also endorse a novel, empirical argument in favor of counterpart theory. (shrink)

Kincaid argues that molecular biology provides little support for the reductionist program, that biochemistry does not reveal common mechanisms, indeed that biochemical theory obstructs discovery. These assertions clash with biologists' stated advocacy of reductionist programs and their claims about the consequent unity of experimental biology. This striking disagreement goes beyond differences in meaning granted to the terms. More significant is Kincaid's misunderstanding of what biochemists do, for a closer look at scientific practice-- and one of Kincaid's examples--reveals substantial progress toward (...) explaining biological function with biochemical models. With the molecular detail emerge unifying generalizations as well as further aspects of the functional processes. (shrink)

Pluralism is often put forth as a counter-position to reductionism. In this essay, I argue that reductionism and pluralism are in fact consistent. I propose that there are several potential goals for reductions and that the proper form of a reduction should be considered in tandem with the goal that it aims to achieve. This insight provides a basis for clarifying what version of reductionism are currently defended, for explicating the notion of a fundamental level of explanation, and for showing (...) how one can be both a reductionist and a pluralist. (shrink)

Metaphor influences the construction of biological models and theories and the analysis of its use can reveal important tools of thought. Some aspects of biological organisation are investigated through the analysis of metaphors associated with treating biosystems as a kind of text. In particular, the use of glue and verbs is considered. Some of the reasons why glue is important in the construction of hierarchies are pursued in the light of specific examples, and some of the conceptual links between glue (...) in biology and other domains is discussed. Verbs are shown to be important in the construction of networks. Some of the relations between glue, verb and text are considered and the text metaphor is placed within a much broader context of ideas associated with form, relation and system. The paper concludes with comments on the nature of biological information and the need for extending or better understanding the verbal vocabulary. (shrink)

Reductionism is a central issue in the philosophy of biology. One common objection to reduction is that molecular explanation requires reference to higher-level properties, which I refer to as the context objection. I respond to this objection by arguing that a well-articulated notion of a mechanism and what I term mechanism extension enables one to accommodate the context-dependence of biological processes within a reductive explanation. The existence of emergent features in the context could be raised as an objection to the (...) possibility of reduction via this strategy. I argue that this objection can be overcome by showing that there is no tenable argument for the existence of emergent properties that are not susceptible to a reductive explanation. (shrink)

Although molecular biology has meant different things at different times, the term is often associated with a tendency to view cellular causation as conforming to simple linear schemas in which macro-scale effects are specified by micro-scale structures. The early achievements of molecular biologists were important for the formation of such an outlook, one to which the discovery of recombinant DNA techniques, and a number of other findings, gave new life even after the complexity of genotype–phenotype
relations had become apparent. Against this (...) background we outline how a range of scientific developments and conceptual considerations can be regarded as enabling and perhaps necessitating contemporary systems approaches. We suggest that philosophical ideas have a valuable part to play in making sense of complex scientific and disciplinary issues. (shrink)

This chapter contains sections titled: Highlights of Past Literature Current Work Future Work.

Since the discovery of dark matter in the 1980s, multiple experiments have been set up to detect dark matter particles through some other mode than gravity. Particle physicists provide detailed jus...

RESUMENSegún un punto de vista muy difundido, y alineado con la concepción nómica de la explicación causal, la biología funcional está sometida a un régimen de heteronomía explicativa en cuyo marco los fenómenos orgánicos deben explicarse causalmente recurriendo a leyes oriundas de la física y la química. En contra de esa perspectiva, la concepción experimental de la causación permite entender la naturaleza de muchas explicaciones biológicas que, sin hacer referencia a leyes causales - físicas, químicas o de cualquier otra naturaleza (...) - se legitiman por el hecho de ponernos en condiciones de controlar experimentalmente fenómenos relativos al funcionamiento y a la constitución de los organismos. Esas explicaciones suponen invariantes locales que muchas veces, pero no necesariamente, podrán llegar a ser caracterizados como instancias de leyes físico-químicas. ABSTRACTIn accordance with a widespread point of view, aligned with the nomological conception of causal explanation, Functional Biology is subjected to a regime of explanatory heteronomy under which, organic phenomena should be causally explained by using laws of Physics and Chemistry. Against this perspective, the experimental conception of causation allows us to understand the nature of many biological explanations that, without make any reference to causal laws - physical, chemical or of other nature - are legitimized because they permit the experimental control of phenomena that have to do with the functioning and development of organisms. These explanations involve local invariants that often, but not necessarily, may be characterized as instances of physical and chemical laws. (shrink)

The past decade or so has witnessed an increase in the number of philosophical discussions about emergence and reduction in science. However, many of these discussions (though not all) remain too abstract and theoretical, and are wanting with respect to concrete examples taken from the sciences. This dissertation studies the topics of reduction and emergence in the context of a case study. I focus on the case of chemistry and investigate how emergentism can help us secure the autonomy of this (...) discipline in relation to the underlying microphysics. I develop an account of emergence (called functional emergence) that is, I argue, capable of answering the question of why we have chemistry instead of just applied quantum mechanics. I argue that functionally emergent properties in chemistry -- properties that are defined by their behaviour, not by some shared microphysical constituent -- can help us defend the autonomy of chemistry; they allow for the existence of sui generis chemical regularities, which can be used in sui generis chemical explanations. Functional emergence generates difficulties for some accounts of inter-theoretic reduction, but unlike other theories of emergence it is compatible with weaker forms of reductionism. (shrink)