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  1. Phylogenetic Inference and the Misplaced Premise of Substitution Rates.Kirk Fitzhugh - 2021 - Acta Biotheoretica 69 (4):799-819.
    Three competing ‘methods’ have been endorsed for inferring phylogenetic hypotheses: parsimony, likelihood, and Bayesianism. The latter two have been claimed superior because they take into account rates of sequence substitution. Can rates of substitution be justified on its own accord in inferences of explanatory hypotheses? Answering this question requires addressing four issues: (1) the aim of scientific inquiry, (2) the nature of why-questions, (3) explanatory hypotheses as answers to why-questions, and (4) acknowledging that neither parsimony, likelihood, nor Bayesianism are inferential (...)
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  • Filosofia da Linguagem.Sagid Salles - 2020 - In Rodrigo Reis Lastra Cid & Luiz helvécio Marques Segundo (eds.), Problemas Filosóficos. Editora UFPel. pp. 453-489.
    Este artigo é uma breve introdução à filosofia da linguagem. Ele se concentra nos problemas que surgem a partir de dois conceitos centrais: referência e significado. Em particular, o foco central é no problema fundacional da referência e no problema descritivo do significado, assim como a relação entre eles. Embora esta de modo algum seja uma introdução exaustiva ao tema, muitos conceitos centrais são clarificados, como por exemplo teoria da referência, termo singular, termo geral, teoria do significado, composicionalidade, conteúdo, significado (...)
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  • Contrastando reconstrucciones con herramientas computacionales: una aplicación a la cladística.Ariel Jonathan Roffé - 2020 - Dissertation, Universidad de Buenos Aires (Uba)
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  • Handbook of Evolutionary Thinking in the Sciences.Thomas Heams, Philippe Huneman, Guillaume Lecointre & Marc Silberstein (eds.) - 2015 - Springer.
    The Darwinian theory of evolution is itself evolving and this book presents the details of the core of modern Darwinism and its latest developmental directions. The authors present current scientific work addressing theoretical problems and challenges in four sections, beginning with the concepts of evolution theory, its processes of variation, heredity, selection, adaptation and function, and its patterns of character, species, descent and life. The second part of this book scrutinizes Darwinism in the philosophy of science and its usefulness in (...)
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  • A pragmatic approach to the possibility of de-extinction.Matthew H. Slater & Hayley Clatterbuck - 2018 - Biology and Philosophy 33 (1-2):4.
    A number of influential biologists are currently pursuing efforts to restore previously extinct species. But for decades, philosophers of biology have regarded “de-extinction” as conceptually incoherent. Once a species is gone, it is gone forever. We argue that a range of metaphysical, biological, and ethical grounds for opposing de-extinction are at best inconclusive and that a pragmatic stance that allows for its possibility is more appealing.
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  • A new cladistics of cladists.Malte C. Ebach, Juan J. Morrone & David M. Williams - 2008 - Biology and Philosophy 23 (1):153-156.
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  • The individuality thesis (3 ways).Matthew H. Haber - 2016 - Biology and Philosophy 31 (6):913-930.
    I spell out and update the individuality thesis, that species are individuals, and not classes, sets, or kinds. I offer three complementary presentations of this thesis. First, as a way of resolving an inconsistent triad about natural kinds; second, as a phylogenetic systematics theoretical perspective; and, finally, as a novel recursive account of an evolved character. These approaches do different sorts of work, serving different interests. Presenting them together produces a taxonomy of the debates over the thesis, and isolates ways (...)
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  • Kinship Past, Kinship Present: Bio-Essentialism in the Study of Kinship.Robert A. Wilson - 2016 - American Anthropologist 118 (3).
    In this article, I reconsider bio-essentialism in the study of kinship, centering on David Schneider’s influential critique that concluded that kinship was “a non-subject” (1972:51). Schneider’s critique is often taken to have shown the limitations of and problems with past views of kinship based on biology, genealogy, and reproduction, a critique that subsequently led those reworking kinship as relatedness in the new kinship studies to view their enterprise as divorced from such bio-essentialist studies. Beginning with an alternative narrative connecting kinship (...)
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  • The demise of mental representations.Edward S. Reed - 1981 - Behavioral and Brain Sciences 4 (2):297-298.
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  • Species as individuals: Logical, biological, and philosophical problems.Michael Ruse - 1981 - Behavioral and Brain Sciences 4 (2):299-300.
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  • Natural kinds.Stephen P. Schwartz - 1981 - Behavioral and Brain Sciences 4 (2):301-302.
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  • Interactionism is good, but not good enough.Esther Thelen - 1988 - Behavioral and Brain Sciences 11 (4):650-650.
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  • Developmental explanation and the ontogeny of birdsong: Nature/nurture redux.Timothy Johnston - 1988 - Behavioral and Brain Sciences 11 (4):617-630.
    Despite several decades of criticism, dichotomous thinking about behavioral development remains widespread and influential. This is particularly true in study of birdsong development, where it has become increasingly common to diagnose songs, elements of songs, or precursors of songs as either innate or learned on the basis of isolation-rearing experiments. The theory of sensory templates has encouraged both the dichotomous approach and an emphasis on structural rather than functional aspects of song development. As a result, potentially important lines of investigation (...)
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  • Os dinossauros de Hennig: sobre a importância do monofiletismo para a sistemática biológica.Charles Morphy Dias dos Santos - 2008 - Scientiae Studia 6 (2):179-200.
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  • The Statistical Frame of Mind in Systematic Biology from Quantitative Zoology to Biometry.Joel Hagen - 2003 - Journal of the History of Biology 36 (2):353-384.
    The twentieth century witnessed a dramatic increase in the use of statistics by biologists, including systematists. The modern synthesis and new systematics stimulated this development, particularly after World War II. The rise of "the statistical frame of mind " resulted in a rethinking of the relationship between biological and mathematical points of view, the roles of objectivity and subjectivity in systematic research, the implications of new computing technologies, and the place of systematics among the biological disciplines.
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  • Moving Past the Systematics Wars.Beckett Sterner & Scott Lidgard - 2018 - Journal of the History of Biology 51 (1):31-67.
    It is time to escape the constraints of the Systematics Wars narrative and pursue new questions that are better positioned to establish the relevance of the field in this time period to broader issues in the history of biology and history of science. To date, the underlying assumptions of the Systematics Wars narrative have led historians to prioritize theory over practice and the conflicts of a few leading theorists over the less-polarized interactions of systematists at large. We show how shifting (...)
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  • When is a cladist not a cladist?Aleta Quinn - 2017 - Biology and Philosophy 32 (4):581-598.
    The term “cladist” has distinct meanings in distinct contexts. Communication between philosophers, historians, and biologists has been hindered by different understandings of the term in various contexts. In this paper I trace historical and conceptual connections between several broadly distinct senses of the term “cladist”. I propose seven specific definitions that capture distinct contemporary uses. This serves to disambiguate some cases where the meaning is unclear, and will help resolve apparent disagreements that in fact result from conflicting understandings of the (...)
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  • The normative structure of mathematization in systematic biology.Beckett Sterner & Scott Lidgard - 2014 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 46 (1):44-54.
    We argue that the mathematization of science should be understood as a normative activity of advocating for a particular methodology with its own criteria for evaluating good research. As a case study, we examine the mathematization of taxonomic classification in systematic biology. We show how mathematization is a normative activity by contrasting its distinctive features in numerical taxonomy in the 1960s with an earlier reform advocated by Ernst Mayr starting in the 1940s. Both Mayr and the numerical taxonomists sought to (...)
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  • Metaphysics and common usage.David L. Hull - 1981 - Behavioral and Brain Sciences 4 (2):290-291.
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  • ‘Species-typicality’: Can individuals have typical parts?Timothy D. Johnston - 1981 - Behavioral and Brain Sciences 4 (2):291-292.
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  • The world represented as a hierarchy of nature may not require “species”.Stanley N. Salthe - 1981 - Behavioral and Brain Sciences 4 (2):300-301.
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  • Developmental creationism.Gordon M. Burghardt - 1988 - Behavioral and Brain Sciences 11 (4):632-632.
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  • Well-Structured Biology: Numerical Taxonomy's Epistemic Vision for Systematics.Beckett Sterner - 2014 - In Andrew Hamilton (ed.), Patterns in Nature. University of California Press. pp. 213-244.
    What does it look like when a group of scientists set out to re-envision an entire field of biology in symbolic and formal terms? I analyze the founding and articulation of Numerical Taxonomy between 1950 and 1970, the period when it set out a radical new approach to classification and founded a tradition of mathematics in systematic biology. I argue that introducing mathematics in a comprehensive way also requires re-organizing the daily work of scientists in the field. Numerical taxonomists sought (...)
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  • A Theory of Conceptual Advance: Explaining Conceptual Change in Evolutionary, Molecular, and Evolutionary Developmental Biology.Ingo Brigandt - 2006 - Dissertation, University of Pittsburgh
    The theory of concepts advanced in the dissertation aims at accounting for a) how a concept makes successful practice possible, and b) how a scientific concept can be subject to rational change in the course of history. Traditional accounts in the philosophy of science have usually studied concepts in terms only of their reference; their concern is to establish a stability of reference in order to address the incommensurability problem. My discussion, in contrast, suggests that each scientific concept consists of (...)
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  • Population-genetic trees, maps, and narratives of the great human diasporas.Marianne Sommer - 2015 - History of the Human Sciences 28 (5):108-145.
    From the 1960s, mathematical and computational tools have been developed to arrive at human population trees from various kinds of serological and molecular data. Focusing on the work of the Italian-born population geneticist Luigi Luca Cavalli-Sforza, I follow the practices of tree-building and mapping from the early blood-group studies to the current genetic admixture research. I argue that the visual language of the tree is paralleled in the narrative of the human diasporas, and I show how the tree was actually (...)
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  • The metaphysics of individuality and its consequences for systematic biology.E. O. Wiley - 1981 - Behavioral and Brain Sciences 4 (2):302-303.
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  • The polythetic perspective.Donald D. Jensen - 1988 - Behavioral and Brain Sciences 11 (4):637-637.
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  • Phylogenetic classification.Claudio Gnoli - 2006 - Knowledge Organization 33 (3):138-152.
    One general principle in the construction of classification schemes is that of grouping phenomena to be classified according to their shared origin in evolution or history (phylogenesis). In general schemes, this idea has been applied by several classificationists in identifying a series of integrative levels, each originated from the previous ones, and using them as the main classes. In special schemes, common origin is a key principle in many domains: examples are given from the classification of climates, of organisms, and (...)
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  • Pheneticism reconsidered.Tim Lewens - 2012 - Biology and Philosophy 27 (2):159-177.
    The pheneticist philosophy holds that biological taxa are clusters of entities united by a form of all-things-considered resemblance. This view of taxonomy has come in for almost universal criticism from philosophers, and has received little praise from biologists, over the past 30 years or so. This article defends a modest pheneticism, understood as part of a pluralist view of taxonomy. First, phenetic approaches to taxonomy are alive and well in biological practice, especially in the areas of microbiology and botany. Second, (...)
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  • What is wrong with the DSM?Rachel Cooper - 2004 - History of Psychiatry 15 (1):5-25.
    The DSM is the main classification of mental disorders used by psychiatrists in the United States and, increasingly, around the world. Although widely used, the DSM has come in for fierce criticism, with many commentators believing it to be conceptually flawed in a variety of ways. This paper assesses some of these philosophical worries. The first half of the paper asks whether the project of constructing a classification of mental disorders that ‘cuts nature at the joints’ makes sense. What is (...)
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  • Pattern Cladistics and the ‘Realism–Antirealism Debate’ in the Philosophy of Biology.Francisco Vergara-Silva - 2009 - Acta Biotheoretica 57 (1-2):269-294.
    Despite the amount of work that has been produced on the subject over the years, the ‘transformation of cladistics’ is still a misunderstood episode in the history of comparative biology. Here, I analyze two outstanding, highly contrasting historiographic accounts on the matter, under the perspective of an influential dichotomy in the philosophy of science: the opposition between Scientific Realism and Empiricism. Placing special emphasis on the notion of ‘causal grounding’ of morphological characters in modern developmental biology’s theories, I arrive at (...)
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  • Non-essentialist methods in pre-Darwinian taxonomy.Mary P. Winsor - 2003 - Biology and Philosophy 18 (3):387-400.
    The current widespread belief that taxonomic methods used before Darwin were essentialist is ill-founded. The essentialist method developed by followers of Plato and Aristotle required definitions to state properties that are always present. Polythetic groups do not obey that requirement, whatever may have been the ontological beliefs of the taxonomist recognizing such groups. Two distinct methods of forming higher taxa, by chaining and by examplar, were widely used in the period between Linnaeus and Darwin, and both generated polythetic groups. Philosopher (...)
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  • Organism-environment mutuality epistemics, and the concept of an ecological niche.Thomas R. Alley - 1985 - Synthese 65 (3):411 - 444.
    The concept of an ecological niche (econiche) has been used in a variety of ways, some of which are incompatible with a relational or functional interpretation of the term. This essay seeks to standardize usage by limiting the concept to functional relations between organisms and their surroundings, and to revise the concept to include epistemic relations. For most organisms, epistemics are a vital aspect of their functional relationships to their surroundings and, hence, a major determinant of their econiche. Rejecting the (...)
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  • Description: Its meaning, epistemology, and use with emphasis on information science.Birger Hjørland - 2023 - Journal of the Association for Information Science and Technology 74 (13):1532-1549.
    This study examines the concept of “description” and its theoretical foundations. The literature about it is surprisingly limited, and its usage is vague, sometimes even conflicting. Description should be considered in relation to other processes, such as representation, data capturing, and categorizing, which raises the question about what it means to describe something. Description is often used for any type of predication but may better be limited to predications based on observations. Research aims to establish criteria for making optimal descriptions; (...)
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  • Taxa hold little information about organisms: Some inferential problems in biological systematics.Thomas A. C. Reydon - 2019 - History and Philosophy of the Life Sciences 41 (4):40.
    The taxa that appear in biological classifications are commonly seen as representing information about the traits of their member organisms. This paper examines in what way taxa feature in the storage and retrieval of such information. I will argue that taxa do not actually store much information about the traits of their member organisms. Rather, I want to suggest, taxa should be understood as functioning to localize organisms in the genealogical network of life on Earth. Taxa store information about where (...)
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  • Psa 2018.Philsci-Archive -Preprint Volume- - unknown
    These preprints were automatically compiled into a PDF from the collection of papers deposited in PhilSci-Archive in conjunction with the PSA 2018.
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  • Species as Models.Jun Otsuka - 2019 - Philosophy of Science 86 (5):1075-1086.
    This article characterizes various species concepts in terms of set-theoretic models that license biological inferences and illustrates the logical connections among different species concepts. Species in this construal are abstract models, rather than biological or even tangible entities, and relate to individual organisms via representation, rather than the membership or mereological whole/part relationship. The proposal sheds new light on vexed issues of species and situates them within broader philosophical contexts of model selection, scientific representation, and scientific realism.
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  • Conceptual errors, different perspectives, and genetic analysis of song ontogeny.Paul C. Mundinger - 1988 - Behavioral and Brain Sciences 11 (4):643-644.
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  • In defense of innateness and of its critics.Jonathan Schull - 1988 - Behavioral and Brain Sciences 11 (4):646-647.
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  • The nature and nurture of birdsong.P. J. B. Slater - 1988 - Behavioral and Brain Sciences 11 (4):648-649.
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  • The nature/nurture debate: Same old wolf in new sheep's clothing?Horst D. Steklis - 1988 - Behavioral and Brain Sciences 11 (4):649-650.
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  • Nature/nurture and other dichotomies.Eugene S. Gollin - 1988 - Behavioral and Brain Sciences 11 (4):633-634.
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  • Distributional Information: A Powerful Cue for Acquiring Syntactic Categories.Martin Redington, Nick Chater & Steven Finch - 1998 - Cognitive Science 22 (4):425-469.
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  • A study of the science of taste: On the origins and influence of the core ideas.Robert P. Erickson - 2008 - Behavioral and Brain Sciences 31 (1):59-75.
    Our understanding of the sense of taste is largely based on research designed and interpreted in terms of the traditional four tastes: sweet, sour, salty, and bitter, and now a few more. This concept of basic tastes has no rational definition to test, and thus it has not been tested. As a demonstration, a preliminary attempt to test one common but arbitrary psychophysical definition of basic tastes is included in this article; that the basic tastes are unique in being able (...)
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  • Species, sets, and the derivative nature of philosophy.Leigh M. Valen - 1988 - Biology and Philosophy 3 (1):49-66.
    Concepts and methods originating in one discipline can distort the structure of another when they are applied to the latter. I exemplify this mostly with reference to systematic biology, especially problems which have arisen in relation to the nature of species. Thus the received views of classes, individuals (which term I suggest be replaced by units to avoid misunderstandings), and sets are all inapplicable, but each can be suitably modified. The concept of fuzzy set was developed to deal with species (...)
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  • Problemas Filosóficos: Uma Introdução à Filosofia / Philosophical Problems: An Introduction to Philosophy.Rodrigo Reis Lastra Cid & Luiz Helvécio Marques Segundo (eds.) - 2020 - Pelotas: Editora da UFPel / UFPel Publisher.
    De um modo geral, queríamos mostrar que a filosofia tem suas próprias áreas, mas tem também subáreas em interdisciplinaridade com as ciências. As ciências e as disciplinas acadêmicas em geral têm problemas, cuja a solução pode ser encontrada empiricamente, por meio de experimentos, entrevistas, documentos, ou formalmente, por meio de cálculos etc, porém os problemas das filosofias dessas disciplinas são justamente os problemas mais fundamentais dessas disciplinas, que fundam o quadro conceitual e de pesquisa das mesmas, e que só poderiam (...)
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  • Fifty shades of cladism.Andrew V. Z. Brower - 2018 - Biology and Philosophy 33 (1-2):8.
    Quinn offered seven definitions of “cladist” and discussed the context in which they are used in relation to historical and current debates in systematics. As a member of her study taxon, I offer some contextual color commentary, clarifications on the views of “pattern cladists” regarding monophyly, ancestors, synapomorphy and other concepts, a definition of “syncretist”, and some thoughts on cladistics and philosophy in the twenty first century.
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  • Units “of” selection: The end of “of”?F. J. Odling-Smee & H. C. Plotkin - 1981 - Behavioral and Brain Sciences 4 (2):295-296.
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  • Taxonomy is older than thinking: Epigenetic decisions.Andrew Packard - 1981 - Behavioral and Brain Sciences 4 (2):296-297.
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  • Nature/nurture reflux.Irene M. Pepperberg - 1988 - Behavioral and Brain Sciences 11 (4):645-646.
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