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Theoretical Biology

Andesite Press (2017)

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  1. On the Organism-Environment Distinction in Psychology.Daniel K. Palmer - 2004 - Behavior and Philosophy 32 (2):317 - 347.
    Most psychology begins with a distinction between organism and environment, where the two are implicitly (and sometimes explicitly) conceptualized as flipsides of a skin-severed space. This paper examines that conceptualization. Dewey and Bentley's (1949) account of firm naming is used to show that psychologists have, in general, (1) employed the skin as a morphological criterion for distinguishing organisms from backgrounds, and (2) equated background with environment. This two-step procedure, which in this article is named the morphological conception of organism, is (...)
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  • Does Species Evolution Follow Scale Laws? First Applications of the Scale Relativity Theory to Fossil and Living-beings.Jean Chaline - 2010 - Foundations of Science 15 (3):279-302.
    We have demonstrated, using the Cantor dust method, that the statistical distribution of appearance and disappearance of rodents species (Arvicolid rodent radiation in Europe) follows power laws strengthening the evidence for a fractal structure set. Self-similar laws have been used as model for the description of a huge number of biological systems. With Nottale we have shown that log-periodic behaviors of acceleration or deceleration can be applied to branching macroevolution, to the time sequences of major evolutionary leaps (global life tree, (...)
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  • The Philosophy of Anti‑Dumping as the Affirmation of Life.Arran Gare - 2023 - Biosemiotics 16:1-21.
    Michael Marder in Dump Philosophy claims that that there has been so much dumping with modern civilization that we now live in a dump, with those parts of our environment not contaminated by dumping, now rare. The growth of the dump is portrayed as the triumph of nihilism, predicted by Nietzsche as the outcome of life denying Neoplatonist metaphysics. Marder’s proposed solution, characterized as “undumping”, is to accept the dump and to promote reinterpretations and informal communities within the dump. It (...)
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  • Agential Teleosemantics.Tiago Rama - 2022 - Dissertation, Autonomous University of Barcelona
    The field of the philosophy of biology is flourishing in its aim to evaluate and rethink the view inherited from the previous century ---the Modern Synthesis. Different research areas and theories have come to the fore in the last decades in order to account for different biological phenomena that, in the first instance, fall beyond the explanatory scope of the Modern Synthesis. This thesis is anchored and motivated by this revolt in the philosophy of biology. -/- The central target in (...)
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  • Organisms as subjects: Jakob von Uexküll and Adolf Portmann on the autonomy of living beings and anthropological difference.Filip Jaroš & Carlo Brentari - 2022 - History and Philosophy of the Life Sciences 44 (3):1-23.
    This paper focuses on the links between Jakob von Uexküll’s theoretical biology and Adolf Portmann’s conception of organic life. Its main purpose is to show that Uexküll and Portmann not only share a view of the living being as an autonomous and holistically organized entity, but also base this view on the seminal idea of the subjectivity of the organism. In other words, the respective holistic principles securing the autonomy of the living being—the Bauplan, for Uexküll; the Innerlichkeit, for Portmann—share (...)
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  • Biosemiotics and Applied Evolutionary Epistemology: A Comparison.Nathalie Gontier & M. Facoetti - 2021 - In Nathalie Gontier & M. Facoetti (eds.), In: Pagni E., Theisen Simanke R. (eds) Biosemiotics and Evolution. Interdisciplinary Evolution Research, vol 6. Springer, Cham. Cham: pp. 175-199.
    Both biosemiotics and evolutionary epistemology are concerned with how knowledge evolves. (Applied) Evolutionary Epistemology thereby focuses on identifying the units, levels, and mechanisms or processes that underlie the evolutionary development of knowing and knowledge, while biosemiotics places emphasis on the study of how signs underlie the development of meaning. We compare the two schools of thought and analyze how in delineating their research program, biosemiotics runs into several problems that are overcome by evolutionary epistemologists. For one, by emphasizing signs, biosemiotics (...)
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  • “Semiotic Canalization”: a Process Directing the Use and Interpretation of Signals in Animal Interactions?Gabriel Francescoli - 2021 - Biosemiotics 14 (1):199-207.
    C. S. Peirce defined the sign as a means to communicate a form or habit embodied in the object to the interpretant, thus constraining (through a sign) the behavior of an interpreter to a limited series of effects. This is part of the process of “semiotic scaffolding” in which sign relations interlock and reinforce one another, providing directionality to the process. In biological evolutionary studies canalization is defined as the adjustment of developmental pathways by natural selection to bring about a (...)
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  • Naturalizing Models: New Perspectives in a Peircean Key.Alin Olteanu, Cary Campbell & Sebastian Feil - 2020 - Biosemiotics 13 (2):179-197.
    This paper reconsiders semiotic modelling in light of recent scholarship on Charles Peirce, particularly regarding his concept of proposition. Conceived in the vein of Peirce’s phenomenological categories as well as of his taxonomy of signs, semiotic modelling has mostly been thought of as ascending from simple, basic sign types to complex ones. This constitutes the backbone of most currently accepted semiotic modelling theories and entails the further acceptance of an unexamined a priori coherence between complexity of cognition and complexity of (...)
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  • Agency, Meaning, Perception and Mimicry: Perspectives from the Process of Life and Third Way of Evolution.R. I. Vane-Wright - 2019 - Biosemiotics 12 (1):57-77.
    The concept of biological mimicry is viewed as a ‘process of life’ theory rather than a ‘process of change’ theory—regardless of the historical interest and heuristic value of the subject for the study of evolution. Mimicry is a dynamic ecological system reflecting the possibilities for mutualism and parasitism created by a pre-established bipartite signal-based relationship between two organisms – a potential model and its signal receiver (potential operator). In a mimicry system agency and perception play essential, interconnected roles. Mimicry thus (...)
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  • Derrida's Territorial Knowledge of Justice.William Conklin - 2012 - In Ruth Buchanan, Stewart Motha & Sunday Pahuja (eds.), Reading Modern Law: Critical Methodologies and Sovereign Formations. Rutledge. pp. 102-129.
    Peter Fitzpatrick’s writings prove once and for all that it is possible for a law professor to write in beautiful English. His work also proves once and for all that the dominating tradition of Anglo-American legal philosophy and of law teaching has been barking up the wrong tree: namely, that the philosopher and professional law teachers can understand justice as nested in empty forms, better known as rules, doctrines, principles, policies, and other standards. The more rigorous our analysis or decomposition (...)
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  • Enactment and Construction of the Cognitive Niche: Toward an Ontology of the Mind- World Connection.Konrad Werner - 2020 - Synthese 197 (3):1313-1341.
    The paper discusses the concept of the cognitive niche and distinguishes the latter from the metabolic niche. By using these posits I unpack certain ideas that are crucial for the enactivist movement, especially for its original formulation proposed by Varela, Thompson and Rosh. Drawing on the ontology of location, boundaries, and parthood, I argue that enacting the world can be seen as the process of cognitive niche construction. Moreover, it turns out that enactivism—as seen through the lens of the conceptual (...)
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  • C. S. Peirce and Intersemiotic Translation.Joao Queiroz & Daniella Aguiar - 2015 - In Peter Pericles Trifonas (ed.), International Handbook of Semiotics. Dordrecht: Springer. pp. 201-215.
    Intersemiotic translation (IT) was defined by Roman Jakobson (The Translation Studies Reader, Routledge, London, p. 114, 2000) as “transmutation of signs”—“an interpretation of verbal signs by means of signs of nonverbal sign systems.” Despite its theoretical relevance, and in spite of the frequency in which it is practiced, the phenomenon remains virtually unexplored in terms of conceptual modeling, especially from a semiotic perspective. Our approach is based on two premises: (i) IT is fundamentally a semiotic operation process (semiosis) and (ii) (...)
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  • Neither Logical Empiricism nor Vitalism, but Organicism: What the Philosophy of Biology Was.Daniel J. Nicholson & Richard Gawne - 2015 - History and Philosophy of the Life Sciences 37 (4):345-381.
    Philosophy of biology is often said to have emerged in the last third of the twentieth century. Prior to this time, it has been alleged that the only authors who engaged philosophically with the life sciences were either logical empiricists who sought to impose the explanatory ideals of the physical sciences onto biology, or vitalists who invoked mystical agencies in an attempt to ward off the threat of physicochemical reduction. These schools paid little attention to actual biological science, and as (...)
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  • Two Purposes of Black Hole Production.Clément Vidal - 2012 - Foundations of Science 17 (1):13-15.
    Crane envisions the speculative conjecture that intelligent civilizations might want and be able to produce black holes in the very far future. He implicitly suggests two main purposes of this enterprise: (i) energy production and (ii) universe production. We discuss those two options. The commentary is obviously highly speculative and should be read accordingly.
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  • Development (and Evolution) of the Universe.Stanley N. Salthe - 2010 - Foundations of Science 15 (4):357-367.
    I distinguish Nature from the World. I also distinguish development from evolution. Development is progressive change and can be modeled as part of Nature, using a specification hierarchy. I have proposed a ‘canonical developmental trajectory’ of dissipative structures with the stages defined thermodynamically and informationally. I consider some thermodynamic aspects of the Big Bang, leading to a proposal for reviving final cause. This model imposes a ‘hylozooic’ kind of interpretation upon Nature, as all emergent features at higher levels would have (...)
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  • Ontography and Maieutics, or Speculative Notes on an Ethos for Umwelt Theory.Silver Rattasepp - 2022 - Biosemiotics 15 (2):357-372.
    There is renewed interest in questions of ontology in various fields, as there has been in biosemiotics. But for umwelt theory, ontology needs to be approached in particular ways, in order to avoid it from being yet another “philosophy of access”, part and parcel of the epistemology-ontology dyad, where “ontology” is the leftover of epistemology, or any sort of subjective constitution of things. The article engages in philosophical considerations about what kinds of assumptions and preliminary considerations should be made for (...)
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  • The problem of presentations: how it is that one object is perceptually given in multiple ways.Konrad Werner - 2022 - Synthese 200 (3):1-25.
    This paper answers a philosophical challenge that emerges when we problematize the seemingly trivial "fact" that, on the one hand, through our senses we are presented with a realm that is not of our own making; while, on the other hand, various perceivers are acquainted with diverse presentations of this realm, depending on their perspective and cognitive machinery. The challenge is dubbed here the problem of presentations. The paper draws on the idea of situation-dependent properties proposed by Susanna Schellenberg. However, (...)
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  • The affective and normative intentionality of skilled performance: a radical embodied approach.Laura Mojica & Melina Gastelum Vargas - 2021 - Synthese 199 (3-4):8205-8230.
    In this paper, we argue that the intentionality at play in skilled performance is not only inherently normative but also inherently affective. We take a radically embodied approach to the mind in which we conceive of cognitive agents as sensorimotor systems moved to maintain their biological and sociocultural identity, whose perception is direct and occurs in terms of affordances. Within this framework, we define skilled performance as the enactment of action and perception patterns in which the agent is intentionally oriented (...)
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  • What is it like to be the Metaphysical Subject? An Essay on Early Wittgenstein, our Epistemic Position, and Beyond.Konrad Werner - 2016 - Philosophia 44 (3):921-946.
    I argue that Ludwig Wittgenstein’s idea of the metaphysical subject sheds new light on subjective qualities of experience. In this article I draw first of all on the interpretations provided by Michael Kremer and James Conant. Subsequently, I conclude that “what is it like” means primarily “what is it like to see myself as the metaphysical subject”.
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  • Ecoacoustics and Multispecies Semiosis: Naming, Semantics, Semiotic Characteristics, and Competencies.Almo Farina, Alice Eldridge & Peng Li - 2021 - Biosemiotics 14 (1):141-165.
    Biosemiotics to date has focused on the exchange of signals between organisms, in line with bioacoustics; consideration of the wider acoustic environment as a semiotic medium is under-developed. The nascent discipline of ecoacoustics, that investigates the role of environmental sound in ecological processes and dynamics, fills this gap. In this paper we introduce key ecoacoustic terminology and concepts in order to highlight the value of ecoacoustics as a discipline in which to conceptualise and study intra- and interspecies semiosis. We stress (...)
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  • Philosophical Intuition Is the Capacity to Recognize one’s Epistemic Position. An Old-Fashion Approach Based on Russell, Carnap, Wittgenstein, and Husserl.Konrad Werner - 2020 - Philosophia 48 (5):1725-1751.
    Philosophical intuition has become one of the most debated problems in recent years, largely due to the rise of the movement called experimental philosophy which challenged the conviction that philosophers have some special insight into abstract ideas such as being, knowledge, good and evil, intentional action, etc. In response to the challenge, some authors claim that there is a special cognitive faculty called philosophical intuition which delivers justification to philosophical theses, while some others deny it based on experimental results. A (...)
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  • The role of regulation in the origin and synthetic modelling of minimal cognition.Leonardo Bich & Alvaro Moreno - 2016 - Biosystems 148:12-21.
    In this paper we address the question of minimal cognition by investigating the origin of some crucial cognitive properties from the very basic organisation of biological systems. More specifically, we propose a theoretical model of how a system can distinguish between specific features of its interaction with the environment, which is a fundamental requirement for the emergence of minimal forms of cognition. We argue that the appearance of this capacity is grounded in the molecular domain, and originates from basic mechanisms (...)
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  • Creating the Umwelt: From Chance to Choice.S. N. Salthe - 2014 - Biosemiotics 7 (3):351-359.
    Individual semiotic systems interpreting their environment are not well understood from the externalist approach typical of the scientific method. Science constructs probabilities describing large populations of systems, not individuals. The Umwelt, as the individually experienced/created aspects of the habitat aspect of its population’s ecological niche, is given an internalist understanding within the framework of the compositional hierarchy. Vagueness is an important aspect of the internalist condition. It is selectively reduced momentarily by creative choices that can have a Peircean semiotic formulation, (...)
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  • Exaptation in the Co-evolution of Technology and Mind: New Perspectives from Some Old Literature.Oliver Schlaudt - 2022 - Philosophy and Technology 35 (2):1-26.
    The term exaptation, describing the phenomenon that an existing trait or tool proves to be of new adaptive value in a new context, is flourishing in recent literature from cultural evolution and cognitive archaeology. Yet there also exists an older literature from the nineteenth and twentieth centuries which studied more or less systematically the phenomenon of “change of function” in culture and tool use. Michel Foucault and Ludwig Noiré, who devoted themselves to the history of social institutions and material tools, (...)
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  • Cognitive confinement: theoretical considerations on the construction of a cognitive niche, and on how it can go wrong.Konrad Werner - 2019 - Synthese 198 (7):6297-6328.
    This paper aims to elucidate a kind of ignorance that is more fundamental than a momentary lack of information, but also not a kind of ignorance that is built into the subject’s cognitive apparatus such that the subject can’t do anything about it. The paper sets forth the notion of cognitive confinement, which is a contingent, yet relatively stable state of being structurally or systematically unable to gain information from an environment, determined by patterns of interaction between the subject and (...)
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  • How Low Can You Go? BioEnactivism, Cognitive Biology and Umwelt Ontology.Darian Meacham - 2016 - Humana Mente 9 (31).
    The viability of enactivist philosophy in providing descriptions of biological phenomena across the phylogenetic spectrum relies in large part on the scalability of its central concepts, i.e. whether they remain operative at varying levels of biological complexity. In this paper, I will examine the possibility of scaling two deeply intertwined concepts: cognition and surrounding world. Contra some indications from Varela and others, I will argue that the concept of embodied cognition can be scaled down below the level of the organism. (...)
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  • Mind After Uexküll: A Foray Into the Worlds of Ecological Psychologists and Enactivists.Tim Elmo Feiten - 2020 - Frontiers in Psychology 11.
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  • Are Verbal-Narrative Models More Suitable than Mathematical Models as Information Processing Devices for Some Behavioral (Biosemiotic) Problems?Gabriel Francescoli - 2019 - Biological Theory 14 (3):171-176.
    This article argues that many, if not most, behavior descriptions and sequencing are in essence an interpretation of signs, and are evaluated as sequences of signs by researchers. Thus, narrative analysis, as developed by Barthes and others, seems best suited to be used in behavioral/biosemiotic studies rather than mathematical modeling, and is very similar to some classic ethology methods. As our brain interprets behaviors as signs and attributes meaning to them, narrative analysis seems more suitable than mathematical modeling to describe (...)
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  • “Darwin und die englische Moral”: The Moral Consequences of Uexküll’s Umwelt Theory. [REVIEW]Jonathan Beever & Morten Tønnessen - 2013 - Biosemiotics 6 (3):437-447.
    Uexküll’s 1917 critique of what he calls the “English morality”, written during World War I, points the contemporary reader toward important implications of the translation of descriptive scientific models to normative ethical theories. A key figure motivating biosemiotics, Uexküll presents here a darker side: one where his Umwelt theory seems to motivate a bio-cultural hierarchy of value and worth, where some human beings are worth more than others precisely because of the constraints of their Umwelten. The first English translation of (...)
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  • Adaptivity and emergence in organisms and devices.Peter Cariani - 1991 - World Futures 32 (2):111-132.
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  • The emergence of value: human norms in a natural world.Lawrence Cahoone - 2023 - Albany: State University of New York Press.
    Argues that truth, moral right, political right, and aesthetic value may be understood as arising out of a naturalist account of humanity, if naturalism is rightly conceived.
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  • The Orders of Nature.Lawrence Cahoone - 2013 - State University of New York Press.
    A systematic theory of naturalism, bridging metaphysics and the science of complexity and emergence.
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  • Material sign processes and emergent ecosocial organization.Jay L. Lemke - 2000 - In P. B. Andersen, Claus Emmeche, N. O. Finnemann & P. V. Christiansen (eds.), Downward Causation. Aarhus, Denmark: University of Aarhus Press. pp. 181--213.
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  • Umwelträume and Multisensory Integration. Mirror Perspectives on the Subject–Object Dichotomy.Jonathan Hope - 2010 - Biosemiotics 3 (1):93-105.
    This paper concerns epistemic developments in the field of sensory perception. I argue that Uexküll’s concept of the Umwelträume and certain principles of multisensory integration explain and describe in similar terms the manner in which different sensory modalities interact. Indeed, they both concern knowledge, describing in spatial terms how the mind makes itself up, makes up its objects, and how the objects, in turn, make up the mind. My intention is to set side by side these two trends of thought (...)
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  • Reconstructing the Worlds of Wildlife: Uexküll, Hediger, and Beyond.Matthew Chrulew - 2020 - Biosemiotics 13 (1):137-149.
    The theoretical biology of Jakob von Uexküll has had significant conceptual and practical afterlives, in Continental philosophy, biosemiotics and elsewhere. This paper will examine the utilisation of Uexküll in twentieth-century zoo biology and its significance for relating to wildlife in hybrid environments. There is an important though rarely analysed line of inheritance from von Uexküll to Heini Hediger, the Swiss zoo director and animal psychologist. Hediger’s fundamental theoretical position began from the construction of the world from the animal’s point of (...)
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  • A zoosemiotic approach to the transactional model of communication.Nelly Mäekivi & Mirko Cerrone - 2021 - Semiotica 2021 (242):39-62.
    The analysis of social communication in other-than-human animals poses several theoretical challenges due to the complexity of individual and extra-individual variables. Some previous studies have found a valuable solution in Uexküll’s work by expanding and adapting its usage for the study of communication in a heurtistic manner. An Umwelt analysis provides a theoretical toolbox, which allows researchers to take an emic perspective on the lives and phenomenal world of other animals. However, Umwelt and its elaborations do not allow for a (...)
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  • Inside / Outside.Stanley N. Salthe - 2009 - Biosemiotics 2 (2):247-253.
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  • Georges Canguilhem et la question de la « subjectivité » vitale.Ciprian Jeler - 2014 - Meta: Research in Hermeneutics, Phenomenology, and Practical Philosophy 6 (2):506-525.
    This paper outlines a hypothesis regarding the close connection between two problems in Georges Canguilhem’s work. The first problem is that of Canguilhem’s insistence to include considerations about natural selection in his work and of the role that this notion could play therein. The second problem consists in Canguilhem’s tendency to often use the term “life” as the subject of his sentences, even though this tendency may seem to at least partially contradict some of the central theses advanced in his (...)
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  • A Semiotic Interpretation of the Innate Releasing Mechanism Concept and Other Ethological Triadic Relations.Gabriel Francescoli - 2017 - Biosemiotics 10 (3):461-468.
    This paper tries to link Ethology to Biosemiotics by analysing the similarities between some triadic relationships like biosemiotics’ Object—Representamen—Interpretant and the one established in Ethology between Sign-stimuli— Innate Releasing Mechanism—Modal Action Pattern, or the one potentially established in communication networks comprising Sender—Receiver—Eavesdropper. I argue here that a collaborative relationship is supported by the fact that the observational method used by Ethology is based on the triadic relationship Sender—Receiver—Eavesdropper. This method, by introducing the human observer at the Interpreter/Eavesdropper place, is not (...)
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  • Introduction.Tim Ireland & Paul Cobley - 2022 - Biosemiotics 15 (2):187-192.
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  • Vivoscapes: an Ecosemiotic Contribution to the Ecological Theory.Almo Farina & Philip James - forthcoming - Biosemiotics:1-13.
    Vivoscape, from Latin ‘vivo’ and the English ‘scape’ is presented as a new ecosemiotic agency that integrates the interactions between biological and ecological components of a taxon with the environment. According to this model, the interactions between species and the environment are fused into a new functional unity driven by external and internal events. Sensorial and relational channels are used by a taxon to sense external energy gradients, matter, information and to return actions and proactions in an external operational environment. (...)
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  • The Spatiality of Being.Tim Ireland - 2015 - Biosemiotics 8 (3):381-401.
    Space is a product of semiosis. It is a condition pertinent to an organism’s semiotic freedom, which is articulated by the organism as a consequence of its capacity to manipulate the world in the course of its unfolding interaction with its environment. Spatial configuration is thus the result of agency inherent in the organism-in-its-environment. Space, a consequence of social cohesion, is effected through constraints and processes of enaction which are semiotic. These processes are productive and offer architects a novel means (...)
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  • Generativity in biology.Ramsey Affifi - 2015 - Phenomenology and the Cognitive Sciences 14 (1):149-162.
    The behavior of an organism, according to Merleau-Ponty, lays out a milieu through which significant phenomena of varying degrees of optimality elicit adjustment. This leads to the dialectical co-emergence of milieu and aptitude that is both the product and the condition of life. What is present as a norm soliciting optimization is species-specific, but it also depends on the needs of the organism and its prior experience. Although a rich entry point into biological phenomenology, Merleau-Ponty’s work does not adequately describe (...)
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  • From Peirce’s Semiotics to Information-Sign-Symbol.Gennaro Auletta - 2016 - Biosemiotics 9 (3):451-466.
    Peirce is the father of semiotics. However, his theory was developed long before the developments in information theory. The codification procedures studied by the latter turn out to be crucial also for biology. At the root of both information and semiosis there are equivalence classes. In the case of biological systems, we speak of functional equivalence classes. Equivalence classes represent the grid that organism impose on biochemical processes and signals of the external or internal environment. The whole feedback circuit that (...)
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