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  1. Contingency and Inherency in Evolutionary Developmental Biology.Werner Callebaut - 2009 - In Mauricio Suárez, Mauro Dorato & Miklós Rédei (eds.), EPSA Philosophical Issues in the Sciences · Launch of the European Philosophy of Science Association. Dordrecht, Netherland: Springer. pp. 1--7.
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  • Visions of evolution: self-organization proposes what natural selection disposes.David Batten, Stanley Salthe & Fabio Boschetti - 2008 - Biological Theory 3 (1):17-29.
    This article reviews the seven “visions” of evolution proposed by Depew and Weber , concluding that each posited relationship between natural selection and self-organization has suited different aims and approaches. In the second section of the article, we show that these seven viewpoints may be collapsed into three fundamentally different ones: natural selection drives evolution; self-organization drives evolution; and natural selection and self-organization are complementary aspects of the evolutionary process. We then argue that these three approaches are not mutually exclusive, (...)
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  • The Essence of Scientific Theories.David L. Hull - 2006 - Biological Theory 1 (1):17-19.
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  • Plant individuality: a solution to the demographer’s dilemma.Ellen Clarke - 2012 - Biology and Philosophy 27 (3):321-361.
    The problem of plant individuality is something which has vexed botanists throughout the ages, with fashion swinging back and forth from treating plants as communities of individuals (Darwin 1800 ; Braun and Stone 1853 ; Münch 1938 ) to treating them as organisms in their own right, and although the latter view has dominated mainstream thought most recently (Harper 1977 ; Cook 1985 ; Ariew and Lewontin 2004 ), a lively debate conducted mostly in Scandinavian journals proves that the issues (...)
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  • Evolutionary Epistomology and the Scientific Method.A. J. Clark - 1986 - Philosophica 37.
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  • Methodological suggestions from a comparative psychology of knowledge processes.Donald T. Campbell - 1959 - Inquiry: An Interdisciplinary Journal of Philosophy 2 (1-4):152 – 182.
    Introductory Abstract Philosophers of science, in the course of making a sharp distinction between the tasks of the philosopher and those of the scientist, have pointed to the possibility of an empirical science of induction. A comparative psychology of knowledge processes is offered as one aspect of this potential enterprise. From fragments of such a psychology, methodological suggestions are drawn relevant to several chronic problems in the social sciences, including the publication of negative results from novel explorations, the operational diagnosis (...)
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  • Blind variation and selective retentions in creative thought as in other knowledge processes.Donald T. Campbell - 1960 - Psychological Review 67 (6):380-400.
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  • Scientific perspectivism: A philosopher of science’s response to the challenge of big data biology.Werner Callebaut - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):69-80.
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  • Scientific perspectivism: A philosopher of science's response to the challenge of big data biology.Werner Callebaut - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):69-80.
    Big data biology—bioinformatics, computational biology, systems biology (including ‘omics’), and synthetic biology—raises a number of issues for the philosophy of science. This article deals with several such: Is data-intensive biology a new kind of science, presumably post-reductionistic? To what extent is big data biology data-driven? Can data ‘speak for themselves?’ I discuss these issues by way of a reflection on Carl Woese’s worry that “a society that permits biology to become an engineering discipline, that allows that science to slip into (...)
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  • Beyond Generalized Darwinism. I. Evolutionary Economics from the Perspective of Naturalistic Philosophy of Biology.Werner Callebaut - 2011 - Biological Theory 6 (4):338-350.
    This is the first of two articles in which I reflect on “generalized Darwinism” as currently discussed in evolutionary economics. I approach evolutionary economics by the roundabouts of evolutionary epistemology and the philosophy of biology, and contrast evolutionary economists’ cautious generalizations of Darwinism with “imperialistic” proposals to unify the behavioral sciences. I then discuss the continued resistance to biological ideas in the social sciences, focusing on the issues of naturalism and teleology. In the companion article (Callebaut, Biol Theory 6. doi: (...)
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  • Complexity, Hypersets, and the Ecological Perspective on Perception-Action.Anthony Chemero & M. T. Turvey - 2007 - Biological Theory 2 (1):23-36.
    The ecological approach to perception-action is unlike the standard approach in several respects. It takes the animal-in-its-environment as the proper scale for the theory and analysis of perception-action, it eschews symbol based accounts of perception-action, it promotes self-organization as the theory-constitutive metaphor for perception-action, and it employs self-referring, non-predicative definitions in explaining perception-action. The present article details the complexity issues confronted by the ecological approach in terms suggested by Rosen and introduces non-well-founded set theory as a potentially useful tool for (...)
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  • Evolutionary Developmental Biology.Laura Nuño de la Rosa & G. Müller (eds.) - 2018 - Springer.
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  • The Structure of Scientific Revolutions.Thomas S. Kuhn - 1962 - Chicago, IL: University of Chicago Press. Edited by Ian Hacking.
    Thomas S. Kuhn's classic book is now available with a new index.
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  • Economic Behavior—Evolutionary Versus Behavioral Perspectives.Ulrich Witt - 2011 - Biological Theory 6 (4):388-398.
    Behavioral economics focuses mainly on how limitations of the human cognitive apparatus, risk attitudes, and human sociality affect decision making. The former two lead to deviations from rationality standards, the latter to deviations from rational self-interest. Some of these research interests are also shared by evolutionary psychology which, however, explains the observed deviations by features of the human genetic endowment conjectured to have evolved under fierce selection pressure in early human phylogeny. Important as the decision-making theoretical perspective of the two (...)
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  • Generative entrenchment and an evolutionary developmental biology for culture.William C. Wimsatt - 2006 - Behavioral and Brain Sciences 29 (4):364-366.
    Mesoudi et al.'s new synthesis for cultural evolution closely parallels the evolutionary synthesis of Neo-Darwinism. It too draws inspiration from population genetics, recruits other fields, and, unfortunately, also ignores development. Enculturation involves many serially acquired skills and dependencies that allow us to build a rich cumulative culture. The newer synthesis, evolutionary developmental biology, provides a key tool, generative entrenchment, to analyze them. (Published Online November 9 2006).
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  • Selection without replicators: the origin of genes, and the replicator/interactor distinction in etiobiology.John S. Wilkins, Ian Musgrave & Clem Stanyon - 2012 - Biology and Philosophy 27 (2):215-239.
    Genes are thought to have evolved from long-lived and multiply-interactive molecules in the early stages of the origins of life. However, at that stage there were no replicators, and the distinction between interactors and replicators did not yet apply. Nevertheless, the process of evolution that proceeded from initial autocatalytic hypercycles to full organisms was a Darwinian process of selection of favourable variants. We distinguish therefore between Neo-Darwinian evolution and the related Weismannian and Central Dogma divisions, on the one hand, and (...)
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  • Internal factors in evolution.Lancelot Law Whyte - 1964 - Acta Biotheoretica 17 (1):208.
    It is likely that internal factors play an important role in restricting the possible avenues of evolutionary change from any starting point. Internal selective processes operating on premutational disturbances, on mutations, and on developmental phases may usefully be separated from the adaptive selection of phenotypes. The precise structural and morphological consequences of internal factors should soon become an isolable problem owing to a) the observational correlation of definite changes in hereditary specificity with particular developmental consequences; and b) the progressive theoretical (...)
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  • Herbert Simon’s Silent Revolution.Werner Callebaut - 2007 - Biological Theory 2 (1):76-86.
    Simon’s bounded rationality , the first scientific research program to seriously take the cognitive limitations of decision makers into account, has often been conflated with his more restricted concept of satisficing—choosing an alternative that meets or exceeds specified criteria, but that is not guaranteed to be unique or in any sense “the best.” Proponents of optimization often dismiss bounded rationality out of hand with the following “hallway syllogism” : bounded rationality “boils down to” satisficing; satisficing is “simply” a theory of (...)
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  • Modeling in biology and economics.Michael Weisberg, Samir Okasha & Uskali Mäki - 2011 - Biology and Philosophy 26 (5):613-615.
    Much of biological and economic theorizing takes place by modeling, the indirect study of real-world phenomena by the construction and examination of models. Books and articles about biological and economic theory are often books and articles about models, many of which are highly idealized and chosen for their explanatory power and analytical convenience rather than for their fit with known data sets. Philosophers of science have recognized these facts and have developed literatures about the nature of models, modeling, idealization, as (...)
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  • Learning Versus Evolution: From Biology to Game Theory.Bernard Walliser - 2011 - Biological Theory 6 (4):311-319.
    Two main schemes explain how a system adapts to its environment. Evolutionary models are grounded on three usual processes (variation, transmission, selection) acting at the population level. Learning models are concerned with the endogenous search for a better performance at the individual level. The first ones were initially favored by biology and the second well illustrated by game theory. The article examines first how game theory went to evolution and how biology later considered learning. It shows some examples of a (...)
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  • Selection Is Entailed by Self-Organization and Natural Selection Is a Special Case.Rod Swenson - 2010 - Biological Theory 5 (2):167-181.
    In their book, Darwinism Evolving: Systems Dynamics and the Genealogy of Natural Selection, Depew and Weber (1995) argued for the need to address the relationship between self-organization and natural selection in evolutionary theory, and focused on seven “visions” for doing so. Recently, Batten et al. (2008) in a paper in this journal, entitled “Visions of evolution: self-organization proposes what natural selection disposes,” picked up the issue with the work of Depew and Weber as a starting point. While the efforts of (...)
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  • Selection Is Entailed by Self-Organization and Natural Selection Is a Special Case.Rod Swenson - 2010 - Biological Theory 5 (2):167-181.
    In their book, Darwinism Evolving: Systems Dynamics and the Genealogy of Natural Selection, Depew and Weber argued for the need to address the relationship between self-organization and natural selection in evolutionary theory, and focused on seven “visions” for doing so. Recently, Batten et al. in a paper in this journal, entitled “Visions of evolution: self-organization proposes what natural selection disposes,” picked up the issue with the work of Depew and Weber as a starting point. While the efforts of both sets (...)
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  • The Structure of scientific theories.Frederick Suppe (ed.) - 1974 - Urbana,: University of Illinois Press.
    Suppe, F. The search for philosophic understanding of scientific theories (p. [1]-241)--Proceedings of the symposium.--Bibliography, compiled by Rew A. Godow, Jr. (p. [615]-646).
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  • The evolution and evolvability of culture.Kim Sterelny - 2006 - Mind and Language 21 (2):137-165.
    Joseph Henrich and Richard McElreath begin their survey of theories of cultural evolution with a striking historical example. They contrast the fate of the Bourke and Wills expedition — an attempt to explore some of the arid areas of inland Australia — with the routine survival of the local aboriginals in exactly the same area. That expedition ended in failure and death, despite the fact that it was well equipped, and despite the fact that those on the expedition were tough (...)
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  • The Evolution and Evolvability of Culture.Kim Sterelny - 2006 - Mind and Language 21 (2):137-165.
    In this paper I argue, first, that human lifeways depend on cognitive capital that has typically been built over many generations. This process of gradual accumulation produces an adaptive fit between human agents and their environments; an adaptive fit that is the result of hidden‐hand, evolutionary mechanisms. To explain distinctive features of human life, we need to understand how cultures evolve. Second, I distinguish a range of different evolutionary models of culture. Third, I argue that none of meme‐based models, dual (...)
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  • Darwinian spaces: Peter Godfrey-Smith on selection and evolution.Kim Sterelny - 2011 - Biology and Philosophy 26 (4):489-500.
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  • Bio-ontologies as tools for integration in biology.Sabina Leonelli - 2008 - Biological Theory 3 (1):7-11.
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  • Modest Evolutionary Naturalism.Ronald N. Giere - 2006 - Biological Theory 1 (1):52-60.
    I begin by arguing that a consistent general naturalism must be understood in terms of methodological maxims rather than metaphysical doctrines. Some specific maxims are proposed. I then defend a generalized naturalism from the common objection that it is incapable of accounting for the normative aspects of human life, including those of scientific practice itself. Evolutionary naturalism, however, is criticized as being incapable of providing a sufficient explanation of categorical moral norms. Turning to the epistemological norms of science itself, particularly (...)
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  • Interdisciplinary modeling: a case study of evolutionary economics.Collin Rice & Joshua Smart - 2011 - Biology and Philosophy 26 (5):655-675.
    Biologists and economists use models to study complex systems. This similarity between these disciplines has led to an interesting development: the borrowing of various components of model-based theorizing between the two domains. A major recent example of this strategy is economists’ utilization of the resources of evolutionary biology in order to construct models of economic systems. This general strategy has come to be called evolutionary economics and has been a source of much debate among economists. Although philosophers have developed literatures (...)
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  • The three faces of ecological fitness.Kent A. Peacock - 2011 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 42 (1):99-105.
    This paper argues that fitness is most usefully understood as those properties of organisms that are explanatory of survival in the broadest sense, not merely descriptive of reproductive success. Borrowing from Rosenberg and Bouchard , fitness in this sense is ecological in that it is defined by the interactions between organisms and environments. There are three sorts of ecological fitness: the well-documented ability to compete, the ability to cooperate , and a third sense of fitness that has received insufficient attention (...)
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  • Size doesn’t matter: towards a more inclusive philosophy of biology. [REVIEW]Maureen A. O’Malley & John Dupré - 2007 - Biology and Philosophy 22 (2):155-191.
    Philosophers of biology, along with everyone else, generally perceive life to fall into two broad categories, the microbes and macrobes, and then pay most of their attention to the latter. ‘Macrobe’ is the word we propose for larger life forms, and we use it as part of an argument for microbial equality. We suggest that taking more notice of microbes – the dominant life form on the planet, both now and throughout evolutionary history – will transform some of the philosophy (...)
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  • Paradigm change in evolutionary microbiology.Maureen A. O’Malley & Yan Boucher - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36 (1):183-208.
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  • From genetic to genomic regulation: iterativity in microRNA research.Maureen A. O’Malley, Kevin C. Elliott & Richard M. Burian - 2010 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 41 (4):407-417.
    The discovery and ongoing investigation of microRNAs suggest important conceptual and methodological lessons for philosophers and historians of biology. This paper provides an account of miRNA research and the shift from viewing these tiny regulatory entities as minor curiosities to seeing them as major players in the post-transcriptional regulation of genes. Conceptually, the study of miRNAs is part of a broader change in understandings of genetic regulation, in which simple switch-like mechanisms were reinterpreted as aspects of complex cellular and genome-wide (...)
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  • Human Behavior and Cognition in Evolutionary Economics.Richard R. Nelson - 2011 - Biological Theory 6 (4):293-300.
    My brand of evolutionary economics recognizes, highlights, that modern economies are always in the process of changing, never fully at rest, with much of the energy coming from innovation. This perspective obviously draws a lot from Schumpeter. Continuing innovation, and the creative destruction that innovation engenders, is driving the system. There are winners and losers in the process, but generally the changes can be regarded as progress. The processes through which economic activity and performance evolve has a lot in common (...)
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  • Synthetic Biology: A Bridge Between Functional and Evolutionary Biology.Michel Morange - 2009 - Biological Theory 4 (4):368-377.
    The interests of synthetic biologists may appear to differ greatly from those of evolutionary biologists. The engineering of organisms must be distinguished from the tinkering action of evolution; the ambition of synthetic biologists is to overcome the limits of natural evolution. But the relations between synthetic biology and evolutionary biology are more complex than this abrupt opposition: Synthetic biology may play an important role in the increasing interactions between functional and evolutionary biology. In practice, synthetic biologists have learnt to submit (...)
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  • Paradigm change in evolutionary microbiology.Maureen A. O’Malley & Yan Boucher - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36 (1):183-208.
    Thomas Kuhn had little to say about scientific change in biological science, and biologists are ambivalent about how applicable his framework is for their disciplines. We apply Kuhn’s account of paradigm change to evolutionary microbiology, where key Darwinian tenets are being challenged by two decades of findings from molecular phylogenetics. The chief culprit is lateral gene transfer, which undermines the role of vertical descent and the representation of evolutionary history as a tree of life. To assess Kuhn’s relevance to this (...)
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  • Values in Science.Ernan McMullin - 1982 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1982 (4):3-28.
    This paper argues that the appraisal of theory is in important respects closer in structure to value-judgement than it is to the rule-governed inference that the classical tradition in philosophy of science took for granted.
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  • Values in science.Ernan McMullin - 2012 - Zygon 47 (4):686-709.
    In this essay, which was his presidential address to the Philosophy of Science Association, Ernan McMullin argued that the watershed between “classic” philosophy of science and the “new” philosophy of science can best be understood by analyzing the change in our perception of the role played by values in science. He begins with some general remarks about the nature of value, goes on to explore some of the historical sources for the claim that judgement in science is value‐laden, and concludes (...)
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  • Models, mathematics and metaphors.R. C. Lewontin - 1963 - Synthese 15 (1):222 - 244.
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  • Cultural Niche Construction: An Introduction.Kevin N. Laland & Michael J. O’Brien - 2011 - Biological Theory 6 (3):191-202.
    Niche construction is the process whereby organisms, through their activities and choices, modify their own and each other’s niches. By transforming natural-selection pressures, niche construction generates feedback in evolution at various different levels. Niche-constructing species play important ecological roles by creating habitats and resources used by other species and thereby affecting the flow of energy and matter through ecosystems—a process often referred to as “ecosystem engineering.” An important emphasis of niche construction theory (NCT) is that acquired characters play an evolutionary (...)
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  • Metaphors we live by.George Lakoff & Mark Johnson - 1980 - Chicago: University of Chicago Press. Edited by Mark Johnson.
    The now-classic Metaphors We Live By changed our understanding of metaphor and its role in language and the mind. Metaphor, the authors explain, is a fundamental mechanism of mind, one that allows us to use what we know about our physical and social experience to provide understanding of countless other subjects. Because such metaphors structure our most basic understandings of our experience, they are "metaphors we live by"--metaphors that can shape our perceptions and actions without our ever noticing them. In (...)
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  • The end of the adaptive landscape metaphor?Jonathan Kaplan - 2008 - Biology and Philosophy 23 (5):625-638.
    The concepts of adaptive/fitness landscapes and adaptive peaks are a central part of much of contemporary evolutionary biology; the concepts are introduced in introductory texts, developed in more detail in graduate-level treatments, and are used extensively in papers published in the major journals in the field. The appeal of visualizing the process of evolution in terms of the movement of populations on such landscapes is very strong; as one becomes familiar with the metaphor, one often develops the feeling that it (...)
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  • A general account of selection: Biology, immunology, and behavior.David L. Hull, Rodney E. Langman & Sigrid S. Glenn - 2001 - Behavioral and Brain Sciences 24 (3):511-528.
    Authors frequently refer to gene-based selection in biological evolution, the reaction of the immune system to antigens, and operant learning as exemplifying selection processes in the same sense of this term. However, as obvious as this claim may seem on the surface, setting out an account of “selection” that is general enough to incorporate all three of these processes without becoming so general as to be vacuous is far from easy. In this target article, we set out such a general (...)
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  • Underqualified—maximal generality in Darwinian explanation: a response to Matt Gers.Geoffrey M. Hodgson & Thorbjørn Knudsen - 2012 - Biology and Philosophy 27 (4):607-614.
    Gers (Biol Philos, 2011) provides a positive and constructive view of the project to generalise Darwinian principles in Geoffrey Hodgson and Thorbjørn Knudsen’s Darwin’s Conjecture. We note considerable overlap with his work and ours, and also with important recent work of Godfrey-Smith ( 2009 ), which Gers cites extensively. But we also note that there are differences in research objectives between Gers and Godfrey-Smith, on the one hand, and ourselves, on the other. Gers and Godfrey-Smith focus on the elucidation of (...)
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  • Generalized Darwinism and Evolutionary Economics: From Ontology to Theory.Geoffrey M. Hodgson & Thorbjørn Knudsen - 2011 - Biological Theory 6 (4):326-337.
    Despite growing interest in evolutionary economics since the 1980s, a unified theoretical approach has so far been lacking. Methodological and ontological discussions within evolutionary economics have attempted to understand and help rectify this failure, but have revealed in turn further differences of perspective. One aim of this article is to show how different approaches relate to different levels of abstraction. A second purpose is to show that generalized Darwinism is some way from the most abstract level, and illustrates how it (...)
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  • The Structuralist View of Economic Theories: A Review Essay: The Case of General Equilibrium in Particular.D. Wade Hands - 1985 - Economics and Philosophy 1 (2):303-335.
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  • Formalization and the Meaning of “Theory” in the Inexact Biological Sciences.James Griesemer - 2013 - Biological Theory 7 (4):298-310.
    Exact sciences are described as sciences whose theories are formalized. These are contrasted to inexact sciences, whose theories are not formalized. Formalization is described as a broader category than mathematization, involving any form/content distinction allowing forms, e.g., as represented in theoretical models, to be studied independently of the empirical content of a subject-matter domain. Exactness is a practice depending on the use of theories to control subject-matter domains and to align theoretical with empirical models and not merely a state of (...)
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  • Development, culture, and the units of inheritance.James Griesemer - 2000 - Philosophy of Science 67 (3):368.
    Developmental systems theory (DST) expands the unit of replication from genes to whole systems of developmental resources, which DST interprets in terms of cycling developmental processes. Expansion seems required by DST's argument against privileging genes in evolutionary and developmental explanations of organic traits. DST and the expanded replicator brook no distinction between biological and cultural evolution. However, by endorsing a single expanded unit of inheritance and leaving the classical molecular notion of gene intact, DST achieves only a nominal reunification of (...)
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  • The role of information and replication in selection processes.Peter Godfrey-Smith - 2001 - Behavioral and Brain Sciences 24 (3):538-538.
    Hull et al. argue that information and replication are both essential ingredients in any selection process. But both information and replication are found in only some selection processes, and should not be included in abstract descriptions of selection intended to help researchers discover and describe selection processes in new domains.
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  • Review of Peter Godfrey-Smith: Complexity and the Function of Mind in Nature[REVIEW]D. M. Walsh - 1997 - British Journal for the Philosophy of Science 48 (4):613-617.
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