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  1. Steering Representations—Towards a Critical Understanding of Digital Twins.Paulan Korenhof, Vincent Blok & Sanneke Kloppenburg - 2021 - Philosophy and Technology 34 (4):1751-1773.
    Digital Twins are conceptualised in the academic technical discourse as real-time realistic digital representations of physical entities. Originating from product engineering, the Digital Twin quickly advanced into other fields, including the life sciences and earth sciences. Digital Twins are seen by the tech sector as the new promising tool for efficiency and optimisation, while governmental agencies see it as a fruitful means for improving decision-making to meet sustainability goals. A striking example of the latter is the European Commission who wishes (...)
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  • Hybrids and the Boundaries of Moral Considerability or Revisiting the Idea of Non-Instrumental Value.Magdalena Holy-Luczaj & Vincent Blok - 2019 - Philosophy and Technology 34 (2):223-242.
    The transgressive ontological character of hybrids—entities crossing the ontological binarism of naturalness and artificiality, e.g., biomimetic projects—calls for pondering the question of their ethical status, since metaphysical and moral ideas are often inextricably linked. The example of it is the concept of “moral considerability” and related to it the idea of “intrinsic value” understood as a non-instrumentality of a being. Such an approach excludes hybrids from moral considerations due to their instrumental character. In the paper, we revisit the boundaries of (...)
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  • The Machine Conception of the Organism in Development and Evolution: A Critical Analysis.Daniel J. Nicholson - 2014 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 48:162-174.
    This article critically examines one of the most prevalent metaphors in modern biology, namely the machine conception of the organism (MCO). Although the fundamental differences between organisms and machines make the MCO an inadequate metaphor for conceptualizing living systems, many biologists and philosophers continue to draw upon the MCO or tacitly accept it as the standard model of the organism. This paper analyses the specific difficulties that arise when the MCO is invoked in the study of development and evolution. In (...)
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  • Beyond categorical definitions of life: a data-driven approach to assessing lifeness.Christophe Malaterre & Jean-François Chartier - 2019 - Synthese 198 (5):4543-4572.
    The concept of “life” certainly is of some use to distinguish birds and beavers from water and stones. This pragmatic usefulness has led to its construal as a categorical predicate that can sift out living entities from non-living ones depending on their possessing specific properties—reproduction, metabolism, evolvability etc. In this paper, we argue against this binary construal of life. Using text-mining methods across over 30,000 scientific articles, we defend instead a degrees-of-life view and show how these methods can contribute to (...)
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  • Is the Cell Really a Machine?Daniel J. Nicholson - 2019 - Journal of Theoretical Biology 477:108–126.
    It has become customary to conceptualize the living cell as an intricate piece of machinery, different to a man-made machine only in terms of its superior complexity. This familiar understanding grounds the conviction that a cell's organization can be explained reductionistically, as well as the idea that its molecular pathways can be construed as deterministic circuits. The machine conception of the cell owes a great deal of its success to the methods traditionally used in molecular biology. However, the recent introduction (...)
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  • Everything Flows: Towards a Processual Philosophy of Biology.Daniel J. Nicholson & John Dupré (eds.) - 2018 - Oxford, United Kingdom: Oxford University Press.
    This collection of essays explores the metaphysical thesis that the living world is not made up of substantial particles or things, as has often been assumed, but is rather constituted by processes. The biological domain is organised as an interdependent hierarchy of processes, which are stabilised and actively maintained at different timescales. Even entities that intuitively appear to be paradigms of things, such as organisms, are actually better understood as processes. Unlike previous attempts to articulate processual views of biology, which (...)
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  • Reconceptualizing the Organism: From Complex Machine to Flowing Stream.Daniel J. Nicholson - 2018 - In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press.
    This chapter draws on insights from non-equilibrium thermodynamics to demonstrate the ontological inadequacy of the machine conception of the organism. The thermodynamic character of living systems underlies the importance of metabolism and calls for the adoption of a processual view, exemplified by the Heraclitean metaphor of the stream of life. This alternative conception is explored in its various historical formulations and the extent to which it captures the nature of living systems is examined. Following this, the chapter considers the metaphysical (...)
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  • The logic of information: a theory of philosophy as conceptual design.Luciano Floridi - 2019 - Oxford, England: Oxford University Press.
    Luciano Floridi presents an innovative approach to philosophy, conceived as conceptual design. His starting-point is that reality provides the data which we transform into information. He explores how we make, transform, refine, and improve the objects of our knowledge, and defends the radical idea that knowledge is design.
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  • (1 other version)Is defining life pointless? Operational definitions at the frontiers of biology.Leonardo Bich & Sara Green - 2017 - Synthese 195 (9):3919-3946.
    Despite numerous and increasing attempts to define what life is, there is no consensus on necessary and sufficient conditions for life. Accordingly, some scholars have questioned the value of definitions of life and encouraged scientists and philosophers alike to discard the project. As an alternative to this pessimistic conclusion, we argue that critically rethinking the nature and uses of definitions can provide new insights into the epistemic roles of definitions of life for different research practices. This paper examines the possible (...)
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  • A critical hermeneutic reflection on the paradigm-level assumptions underlying responsible innovation.Job Timmermans & Vincent Blok - 2018 - Synthese 198 (Suppl 19):4635-4666.
    The current challenges of implementing responsible innovation can in part be traced back to the assumptions behind the ways of thinking that ground the different pre-existing theories and approaches that are shared under the RI-umbrella. Achieving the ideals of RI, therefore not only requires a shift on an operational and systemic level but also at the paradigm-level. In order to develop a deeper understanding of this paradigm shift, this paper analyses the paradigm-level assumptions that are being brought forward by the (...)
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  • Understanding Scientific Understanding.Henk W. de Regt - 2017 - New York: Oup Usa.
    Understanding is a central aim of science and highly important in present-day society. But what precisely is scientific understanding and how can it be achieved? This book answers these questions, through philosophical analysis and historical case studies, and presents a philosophical theory of scientific understanding that highlights its contextual nature.
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  • (1 other version)Is defining life pointless? Operational definitions at the frontiers of Biology.Leonardo Bich & Sara Green - 2017 - Synthese:1-28.
    Despite numerous and increasing attempts to define what life is, there is no consensus on necessary and sufficient conditions for life. Accordingly, some scholars have questioned the value of definitions of life and encouraged scientists and philosophers alike to discard the project. As an alternative to this pessimistic conclusion, we argue that critically rethinking the nature and uses of definitions can provide new insights into the epistemic roles of definitions of life for different research practices. This paper examines the possible (...)
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  • Synthetic biology as red herring.Beth Preston - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4b):649-659.
    It has become commonplace to say that with the advent of technologies like synthetic biology the line between artifacts and living organisms, policed by metaphysicians since antiquity, is beginning to blur. But that line began to blur 10,000 years ago when plants and animals were first domesticated; and has been thoroughly blurred at least since agriculture became the dominant human subsistence pattern many millennia ago. Synthetic biology is ultimately only a late and unexceptional offshoot of this prehistoric development. From this (...)
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  • The mismeasure of machine: Synthetic biology and the trouble with engineering metaphors.Maarten Boudry & Massimo Pigliucci - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):660-668.
    The scientific study of living organisms is permeated by machine and design metaphors. Genes are thought of as the ‘‘blueprint’’ of an organism, organisms are ‘‘reverse engineered’’ to discover their functionality, and living cells are compared to biochemical factories, complete with assembly lines, transport systems, messenger circuits, etc. Although the notion of design is indispensable to think about adaptations, and engineering analogies have considerable heuristic value (e.g., optimality assumptions), we argue they are limited in several important respects. In particular, the (...)
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  • Synthetic Modeling and Mechanistic Account: Material Recombination and Beyond.Tarja Knuuttila & Andrea Loettgers - 2013 - Philosophy of Science 80 (5):874-885.
    Recently, Bechtel and Abrahamsen have argued that mathematical models study the dynamics of mechanisms by recomposing the components and their operations into an appropriately organized system. We will study this claim through the practice of combinational modeling in circadian clock research. In combinational modeling, experiments on model organisms and mathematical/computational models are combined with a new type of model—a synthetic model. We argue that the strategy of recomposition is more complicated than what Bechtel and Abrahamsen indicate. Moreover, synthetic modeling as (...)
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  • Why Machine-Information Metaphors are Bad for Science and Science Education.Massimo Pigliucci & Maarten Boudry - 2011 - Science & Education 20 (5-6):471.
    Genes are often described by biologists using metaphors derived from computa- tional science: they are thought of as carriers of information, as being the equivalent of ‘‘blueprints’’ for the construction of organisms. Likewise, cells are often characterized as ‘‘factories’’ and organisms themselves become analogous to machines. Accordingly, when the human genome project was initially announced, the promise was that we would soon know how a human being is made, just as we know how to make airplanes and buildings. Impor- tantly, (...)
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  • Metaphors we live by.George Lakoff & Mark Johnson - 1980 - Chicago: University of Chicago Press. Edited by Mark Johnson.
    The now-classic Metaphors We Live By changed our understanding of metaphor and its role in language and the mind. Metaphor, the authors explain, is a fundamental mechanism of mind, one that allows us to use what we know about our physical and social experience to provide understanding of countless other subjects. Because such metaphors structure our most basic understandings of our experience, they are "metaphors we live by"--metaphors that can shape our perceptions and actions without our ever noticing them. In (...)
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  • (2 other versions)The phenomenon of life: toward a philosophical biology.Hans Jonas - 1966 - Evanston, Ill.: Northwestern University Press.
    A classic of phenomenology and existentialism and arguably Jonas's greatest work, The Phenomenon of Life sets forth a systematic and comprehensive philosophy -- ...
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  • Mind in Life: Biology, Phenomenology, and the Sciences of Mind.Evan Thompson - 2007 - Cambridge, Mass.: Harvard University Press.
    The question has long confounded philosophers and scientists, and it is this so-called explanatory gap between biological life and consciousness that Evan ...
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  • A feeling for the (micro)organism? Yeastiness, organism agnosticism and whole genome synthesis.Jane Calvert & Erika Szymanski - 2020 - New Genetics and Society 39 (4):385-403.
    Synthetic biologists attempt to apply engineering principles to biological systems. This involves treating organisms as “chassis” – neutral frames into which synthetic constructs can be inserted, rather than living entities with distinctive features. Here we focus on a particularly charismatic organism – Saccharomyces cerevisiae (brewer's yeast) – and the attempt to make a synthetic version of its genome. We argue that the “personality” of the yeast and the affective relationship scientists (and others) have to it, challenges the “organism agnosticism” of (...)
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  • Toward a Terrestrial Turn in Philosophy of Technology.Pieter Lemmens, Vincent Blok & Jochem Zwier - 2017 - Techné: Research in Philosophy and Technology 21 (2/3):114-126.
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  • Is synthetic biology mechanical biology?Sune Holm - 2015 - History and Philosophy of the Life Sciences 37 (4):413-429.
    A widespread and influential characterization of synthetic biology emphasizes that synthetic biology is the application of engineering principles to living systems. Furthermore, there is a strong tendency to express the engineering approach to organisms in terms of what seems to be an ontological claim: organisms are machines. In the paper I investigate the ontological and heuristic significance of the machine analogy in synthetic biology. I argue that the use of the machine analogy and the aim of producing rationally designed organisms (...)
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  • Reengineering Metaphysics: Modularity, Parthood, and Evolvability in Metabolic Engineering.Catherine Kendig & Todd T. Eckdahl - 2017 - Philosophy, Theory, and Practice in Biology 9 (8).
    The premise of biological modularity is an ontological claim that appears to come out of practice. We understand that the biological world is modular because we can manipulate different parts of organisms in ways that would only work if there were discrete parts that were interchangeable. This is the foundation of the BioBrick assembly method widely used in synthetic biology. It is one of a number of methods that allows practitioners to construct and reconstruct biological pathways and devices using DNA (...)
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  • Mind, Matter, and Metabolism.Peter Godfrey-Smith - 2016 - Journal of Philosophy 113 (10):481-506.
    I discuss the bearing on the mind-body problem of some general characteristics of living systems, including the physical basis of metabolism and the relation between living activity and cognitive capacities in simple organisms. I then attempt to describe stages in the history of animal life important to the evolution of subjective experience. Features of the biological basis of cognition are used to criticize arguments against materialism that draw on the conceivability of a separation between mental and physical. I also argue (...)
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  • Metaphors We Live By.George Lakoff & Mark Johnson - 1980 - Ethics 93 (3):619-621.
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  • Towards a processual microbial ontology.Eric Bapteste & John Dupre - 2013 - Biology and Philosophy 28 (2):379-404.
    Standard microbial evolutionary ontology is organized according to a nested hierarchy of entities at various levels of biological organization. It typically detects and defines these entities in relation to the most stable aspects of evolutionary processes, by identifying lineages evolving by a process of vertical inheritance from an ancestral entity. However, recent advances in microbiology indicate that such an ontology has important limitations. The various dynamics detected within microbiological systems reveal that a focus on the most stable entities (or features (...)
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  • Technology and the character of contemporary life: a philosophical inquiry.Albert Borgmann - 1984 - Chicago: University of Chicago Press.
    Blending social analysis and philosophy, Albert Borgmann maintains that technology creates a controlling pattern in our lives.
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  • Is metabolism necessary?M. A. Boden - 1999 - British Journal for the Philosophy of Science 50 (2):231-248.
    Metabolism is a criterion of life. Three senses are distinguished. The weakest allows strong A-Life: virtual creatures having physical existence in computer electronics, but not bodies, are classes as 'alive'. The second excludes strong A-Life but allows that some non-biochemical A-Life robots could be classed as alive. The third, which stresses the body's self-production by energy budgeting and self-equilibrating energy exchanges of some (necessary) complexity, excludes both strong A-Life and living non-biochemical robots.
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  • The Third Lens: Metaphor and the Creation of Modern Cell Biology.Andrew S. Reynolds - 2018 - Chicago: University of Chicago Press.
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  • (1 other version)Toward a Philosophy of Technosciences.Sacha Loeve & Bernadette Bensaude Vincent - 2018 - In Bernadette Bensaude Vincent, Xavier Guchet & Sacha Loeve (eds.), French Philosophy of Technology: Classical Readings and Contemporary Approaches. Cham: Springer Verlag. pp. 169-186.
    The term “technoscience” gained philosophical significance in the 1970s but it aroused ambivalent views. On the one hand, several scholars have used it to shed light on specific features of recent scientific research, especially with regard to emerging technologies that blur boundaries ; on the other hand, as a matter of fact “technoscience” did not prompt great interest among philosophers. In the French area, a depreciative meaning prevails: “technoscience” means the contamination of science by management and capitalism. Some even argue (...)
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  • How a ‘drive to make’ shapes synthetic biology.Pablo Schyfter - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4b):632-640.
    A commitment to ‘making’—creating or producing things—can shape scientific and technological fields in important ways. This article demonstrates this by exploring synthetic biology, a field committed to making use of advanced techniques from molecular biology in order to make with living matter. I describe and analyse how this field’s ‘drive to make’ shapes its organisational, methodological, epistemological, and ontological character. Synthetic biologists’ ambition to make helps determine how their field demarcates itself, sets appropriate methods and practices, construes the purpose and (...)
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  • Biological Interests, Normative Functions, and Synthetic Biology.Sune Holm - 2012 - Philosophy and Technology 25 (4):525-541.
    In this paper, I discuss the aetiological account of biological interests, developed by Varner, in the context of artefactual organisms envisioned by current research in synthetic biology. In “Sections 2–5”, I present Varner's theory and criticise it for being incapable of ascribing non-derivative interests to artefactual organisms due to their lack of a history of natural selection. In “Sections 6–7”, I develop a new alternative to Varner's account, building on the organisational theory of biological teleology and function. I argue that (...)
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  • A functional account of degrees of minimal chemical life.Mark A. Bedau - 2012 - Synthese 185 (1):73-88.
    This paper describes and defends the view that minimal chemical life essentially involves the chemical integration of three chemical functionalities: containment, metabolism, and program (Rasmussen et al. in Protocells: bridging nonliving and living matter, 2009a ). This view is illustrated and explained with the help of CMP and Rasmussen diagrams (Rasmussen et al. In: Rasmussen et al. (eds.) in Protocells: bridging nonliving and living matter, 71–100, 2009b ), both of which represent the key chemical functional dependencies among containment, metabolism, and (...)
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  • Making Knowledge in Synthetic Biology: Design Meets Kludge.Maureen A. O’Malley - 2009 - Biological Theory 4 (4):378-389.
    Synthetic biology is an umbrella term that covers a range of aims, approaches, and techniques. They are all brought together by common practices of analogizing, synthesizing, mechanicizing, and kludging. With a focus on kludging as the connection point between biology, engineering, and evolution, I show how synthetic biology’s successes depend on custom-built kludges and a creative, “make-it-work” attitude to the construction of biological systems. Such practices do not fit neatly, however, into synthetic biology’s celebration of rational design. Nor do they (...)
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  • Leçons Sur les Phénomènes de la Vie Communs aux Animaux Et aux Végétaux.Claude Bernard - 1966 - Vrin.
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  • (2 other versions)The Phenomenon of Life: Toward a Philosophical Biology.Hans Jonas - 1966 - Les Etudes Philosophiques 22 (3):340-340.
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  • Machine metaphors and ethics in synthetic biology.Joachim Boldt - 2018 - Life Sciences, Society and Policy 14 (1):1-13.
    The extent to which machine metaphors are used in synthetic biology is striking. These metaphors contain a specific perspective on organisms as well as on scientific and technological progress. Expressions such as “genetically engineered machine”, “genetic circuit”, and “platform organism”, taken from the realms of electronic engineering, car manufacturing, and information technology, highlight specific aspects of the functioning of living beings while at the same time hiding others, such as evolutionary change and interdependencies in ecosystems. Since these latter aspects are (...)
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  • Living Machines: Metaphors We Live By.Nora S. Vaage - 2020 - NanoEthics 14 (1):57-70.
    Within biology and in society, living creatures have long been described using metaphors of machinery and computation: ‘bioengineering’, ‘genes as code’ or ‘biological chassis’. This paper builds on Lakoff and Johnson’s argument that such language mechanisms shape how we understand the world. I argue that the living machines metaphor builds upon a certain perception of life entailing an idea of radical human control of the living world, looking back at the historical preconditions for this metaphor. I discuss how design is (...)
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  • (2 other versions)The phenomenon of life, toward a philosophical biology.Hans Jonas - 1966 - Revue Philosophique de la France Et de l'Etranger 160:494-494.
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  • Technological biology? Things and kinds in synthetic biology.Pablo Schyfter - 2012 - Biology and Philosophy 27 (1):29-48.
    Social scientific and humanistic research on synthetic biology has focused quite narrowly on questions of epistemology and ELSI. I suggest that to understand this discipline in its full scope, researchers must turn to the objects of the field—synthetic biological artifacts—and study them as the objects in the making of a science yet to be made. I consider one fundamentally important question: how should we understand the material products of synthetic biology? Practitioners in the field, employing a consistent technological optic in (...)
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  • (1 other version)Toward a philosophy of technosciences.Bernadette Bensaude Vincent & Sacha Loeve - 2018 - In Bernadette Bensaude Vincent, Xavier Guchet & Sacha Loeve (eds.), French Philosophy of Technology: Classical Readings and Contemporary Approaches. Cham: Springer Verlag. pp. 169-186.
    The term " technoscience " gained philosophical significance in the 1970s but it aroused ambivalent views. On the one hand, several scholars have used it to shed light on specific features of recent scientific research, especially with regard to emerging technologies that blur boundaries (such as natural/artificial, machine/living being, knowing/making and so on); on the other hand, as a matter of fact " technoscience " did not prompt great interest among philosophers. In the French area, a depreciative meaning prevails: " (...)
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  • Synthetic biology and the technicity of biofuels.Adrian Mackenzie - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (2):190-198.
    The principal existing real-world application of synthetic biology is biofuels. Several ‘next generation biofuel’ companies—Synthetic Genomics, Amyris and Joule Unlimited Technologies—claim to be using synthetic biology to make biofuels. The irony of this is that highly advanced science and engineering serves the very mundane and familiar realm of transport. Despite their rather prosaic nature, biofuels could offer an interesting way to highlight the novelty of synthetic biology from several angles at once. Drawing on the French philosopher of technology and biology (...)
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