Results for 'Mark T. F. Murphy'

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  1. Patchworks.Mark F. Sharlow - manuscript
    This book is a collection of some of my writings that do not fit the mold of standard philosophical articles. These writings range over several topics, including religion, free will, human dignity, the nature of persons, and a few others. The longest item in the collection is an archive of my blog, The Unfinishable Scroll, as it existed when the book was put together. That blog covers many philosophical topics, including some I haven't discussed elsewhere. Also in the collection are (...)
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  2. P-model Alternative to the T-model.Mark D. Roberts - 2004 - Web Journal of Formal, Computational and Logical Linguistics 5:1-18.
    Standard linguistic analysis of syntax uses the T-model. This model requires the ordering: D-structure > S-structure > LF, where D-structure is the sentences deep structure, S-structure is its surface structure, and LF is its logical form. Between each of these representations there is movement which alters the order of the constituent words; movement is achieved using the principles and parameters of syntactic theory. Psychological analysis of sentence production is usually either serial or connectionist. Psychological serial models do not accommodate the (...)
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  3. Gametogênese Animal: Espermatogênese e Ovogênese.Emanuel Isaque Cordeiro da Silva - manuscript
    GAMETOGÊNESE -/- Emanuel Isaque Cordeiro da Silva Instituto Agronômico de Pernambuco Departamento de Zootecnia – UFRPE Embrapa Semiárido -/- • _____OBJETIVO -/- Os estudantes bem informados, estão a buscando conhecimento a todo momento. O estudante de Veterinária e Zootecnia, sabe que a Reprodução é uma área de primordial importância para sua carreira. Logo, o conhecimento da mesma torna-se indispensável. No primeiro trabalho da série fisiologia reprodutiva dos animais domésticos, foi abordado de forma clara, didática e objetiva os mecanismos de diferenciação (...)
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  4. Absolutism, Utilitarianism and Agent-Relative Constraints.Mark T. Nelson - 2022 - International Philosophical Quarterly 62 (2):243-252.
    Absolutism—the idea that some kinds of acts are absolutely wrong and must never be done—plays an important role in medical ethics. Nicholas Denyer has defended it from some influential consequentialist critics who have alleged that absolutism is committed to “agent-relative constraints” and therefore intolerably complex and messy. Denyer ingeniously argues that, if there are problems with agent-relative constraints, then they are problems for consequentialism, since it contains agent-relative constraints, too. I show that, despite its ingenuity, Denyer’s argument does not succeed. (...)
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  5. And now for something completely different: the Elementary Process Theory. Revised, updated and extended 2nd edition of the dissertation with almost the same title.Marcoen J. T. F. Cabbolet - 2022 - Utrecht: Eburon Academic Publishers.
    On the one hand, theories of modern physics are very successful in their areas of application. But on the other hand, the irreconcilability of General Relativity (GR) and Quantum Electrodynamics (QED) suggests that these theories of modern physics are not the final answer regarding the fundamental workings of the universe. This monograph takes the position that the key to advances in the foundations of physics lies in the hypothesis that massive systems made up of antimatter are repulsed by the gravitational (...)
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  6. A categorical model of the Elementary Process Theory incorporating Special Relativity.Marcoen J. T. F. Cabbolet - 2022 - In And now for something completely different: the Elementary Process Theory. Revised, updated and extended 2nd edition of the dissertation with almost the same title. Utrecht: Eburon Academic Publishers. pp. 399-452.
    The purpose of this paper is to show that the Elementary Process Theory (EPT) agrees with the knowledge of the physical world obtained from the successful predictions of Special Relativity (SR). For that matter, a recently developed method is applied: a categorical model of the EPT that incorporates SR is fully specified. Ultimate constituents of the universe of the EPT are modeled as point-particles, gamma-rays, or time-like strings, all represented by integrable hyperreal functions on Minkowski space. This proves that the (...)
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  7. The JTB+S definition of knowledge: solving Gettier's problem.Marcoen J. T. F. Cabbolet - manuscript
    The JTB definition of knowledge has been shown by Gettier to be incomplete: its three conditions are necessary for knowledge, but not sufficient. We argue that the JTB definition can be completed with a very simple fourth condition, namely that the justification for the belief in p must be sufficient to exclude ¬p. It is shown that the resulting JTB+S definition solves the Gettier problem.
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  8. Man as Trinity of Body, Spirit, and Soul.Marcoen J. T. F. Cabbolet - 2022 - In And now for something completely different: the Elementary Process Theory. Revised, updated and extended 2nd edition of the dissertation with almost the same title. Utrecht: Eburon Academic Publishers. pp. 319-370.
    Although there are several monistic and dualistic approaches to the mind-body problem on the basis of classical or quantum mechanics, thus far no consensus exists about a solution. Recently, the Elementary Process Theory (EPT) has been developed: this corresponds with a fundamentally new disciplinary matrix for the study of physical reality. The purpose of the present research was to investigate the mind-body problem within this newly developed disciplinary matrix. The main finding is that the idea of a duality of body (...)
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  9. Tell-Tale Signs of Pseudoskepticism (Bogus Skepticism).Marcoen J. T. F. Cabbolet - manuscript
    Pseudoskepticism, which typically is portraying someone's work as despicable with scientifically unsound polemics, is a modern day threat to the traditional standard of discussion in science and popular science. This essay gives seven tell-tale signs by which pseudoskepticism can be recognized.
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  10. A pluralist view on theories.Marcoen J. T. F. Cabbolet - 2022 - In And now for something completely different: the Elementary Process Theory. Revised, updated and extended 2nd edition of the dissertation with almost the same title. Utrecht: Eburon Academic Publishers. pp. 193-198.
    In philosophy of science, several views have been espoused on the meaning of the term 'theory'; among these are the syntactic view and the semantic view. But even after decades of debate, no consensus has been reached on an all-encompassing positively defined view on theories. Here we take that to mean that the outcome of the debate is that such an all-encompassing view is nonexisting. Correspondingly, the purpose of this paper is to present a pluralist view on theories: it is (...)
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  11. Unobservability of short-lived particles: ground for skepticism about observational claims in elementary particle physics.Marcoen J. T. F. Cabbolet - manuscript
    The physics literature contains many claims that elementary particles have been observed: such observational claims are, of course, important for the development of existential knowledge. Regarding claimed observations of short-lived unstable particles in particular, the use of the word 'observation' is based on the convention in physics that the observation of a short-lived unstable particle can be claimed when its predicted decay products have been observed with a significance of 5 sigma. This paper, however, shows that this 5 sigma convention (...)
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  12. A Semi-Classical Model of the Elementary Process Theory Corresponding to Non-Relativistic Classical Mechanics.Marcoen J. T. F. Cabbolet - 2022 - In And now for something completely different: the Elementary Process Theory. Revised, updated and extended 2nd edition of the dissertation with almost the same title. Utrecht: Eburon Academic Publishers. pp. 255-287.
    Currently there are at least four sizeable projects going on to establish the gravitational acceleration of massive antiparticles on earth. While general relativity and modern quantum theories strictly forbid any repulsive gravity, it has not yet been established experimentally that gravity is attraction only. With that in mind, the Elementary Process Theory (EPT) is a rather abstract theory that has been developed from the hypothesis that massive antiparticles are repulsed by the gravitational field of a body of ordinary matter: the (...)
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  13. The Importance of Developing a Foundation for Naive Category Theory.Marcoen J. T. F. Cabbolet - 2015 - Thought: A Journal of Philosophy 4 (4):237-242.
    Recently Feferman has outlined a program for the development of a foundation for naive category theory. While Ernst has shown that the resulting axiomatic system is still inconsistent, the purpose of this note is to show that nevertheless some foundation has to be developed before naive category theory can replace axiomatic set theory as a foundational theory for mathematics. It is argued that in naive category theory currently a ‘cookbook recipe’ is used for constructing categories, and it is explicitly shown (...)
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  14. The Philosophical Work of Mark Sharlow: an Introduction and Guide.Mark F. Sharlow - manuscript
    Provides an overview of Mark Sharlow's philosophical work with summaries of his positions. Includes references and links to his writings.
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  15. Why Delight in Screamed Vocals? Emotional Hardcore and the Case against Beautifying Pain.Sean T. Murphy - forthcoming - British Journal of Aesthetics.
    Emotional hardcore and other music genres featuring screamed vocals are puzzling for the appreciator. The typical fan attaches appreciative value to musical screams of emotional pain all the while acknowledging it would be inappropriate to hold similar attitudes towards their sonically similar everyday counterpart: actual human screaming. Call this the screamed vocals problem. To solve the problem, I argue we must attend to the anti-sublimating aims that get expressed in the emotional hardcore vocalist’s choice to scream the lyrics. Screamed vocals (...)
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  16. Divine Rationality, Divine Morality, and Divine Love: A Response to Jordan.Mark C. Murphy - 2018 - European Journal for Philosophy of Religion 10 (4):203-211.
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  17. ‘Fine, Invisible Threads’: Schopenhauer on the Cognitively Mediated Structure of Motivation.Sean T. Murphy - 2022 - Journal of Modern Philosophy 4 (1):1-22.
    The central claim of Schopenhauer’s account of human motivation is that ‘cognition is the medium of motives’. In light of motivation’s cognitively mediated structure, he contends that human beings are caused to act by ‘mere thoughts’, what he refers to metaphorically as ‘fine, invisible threads’. Despite this avowedly intellectualist handling of the subject, some commentators remain convinced that Schopenhauer is best read as accepting the ‘Humean truism’ that reason alone never motivates; rather, motivation always has its source in desire together (...)
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  18. Sontag on Impertinent Sympathy and Photographs of Evil.Sean T. Murphy - 2019 - In Colin Marshall (ed.), Comparative Metaethics: Neglected Perspectives on the Foundations of Morality. London: Routledge.
    This chapter corrects for Susan Sontag's undeserved neglect by contemporary ethical philosophers by bringing awareness to some of the unique metaethical insights born of her reflections on photographic representations of evil. I argue that Sontag's thought provides fertile ground for thinking about: (1) moral perception and its relation to moral knowledge; and (2) the epistemic and moral value of our emotional responses to the misery and suffering of others. I show that, contrary to standard moral perception theory (e.g. Blum 1994), (...)
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  19. Mechanistic Levels, Reduction, and Emergence.Mark Povich & Carl F. Craver - 2017 - In Stuart Glennan & Phyllis McKay Illari (eds.), The Routledge Handbook of Mechanisms and Mechanical Philosophy. Routledge. pp. 185-97.
    We sketch the mechanistic approach to levels, contrast it with other senses of “level,” and explore some of its metaphysical implications. This perspective allows us to articulate what it means for things to be at different levels, to distinguish mechanistic levels from realization relations, and to describe the structure of multilevel explanations, the evidence by which they are evaluated, and the scientific unity that results from them. This approach is not intended to solve all metaphysical problems surrounding physicalism. Yet it (...)
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  20. The Unfinishable Scroll and Beyond: Mark Sharlow's Blogs, July 2008 to March 2011.Mark F. Sharlow - manuscript
    An archive of Mark Sharlow's two blogs, "The Unfinishable Scroll" and "Religion: the Next Version." Covers Sharlow's views on metaphysics, epistemology, mind, science, religion, and politics. Includes topics and ideas not found in his papers.
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  21. Conscious Subjects in Detail: Readings in From Brain to Cosmos.Mark F. Sharlow - manuscript
    This document consists primarily of excerpts (chapters 5 and 10-12) from the author’s book From Brain to Cosmos. These excerpts address several traditional problems about the histories of conscious subjects, using the concept of subjective fact that the author developed earlier in the book. Topics include the persistence of conscious subjects through time, the unity or disunity of the self, and the possibility of splitting conscious subjects. (These excerpts depend heavily upon the author’s concept of subjective fact as developed in (...)
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  22. Subjective Facts and Other Minds: Readings in From Brain to Cosmos.Mark F. Sharlow - manuscript
    This document consists primarily of an excerpt (chapter 6) from the author’s book From Brain to Cosmos. That excerpt presents an analysis of the problem of knowledge of other minds, using the concept of subjective fact that the author developed earlier in the book. (Readers unfamiliar with that concept are strongly advised to read chapters 2 and 3 of From Brain to Cosmos first. See the last page of this document for details on how to obtain those chapters.).
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  23. Choosing Disabilities and Enhancements in Children: A Choice too Far?Timothy F. Murphy - 2009 - Reproductie Biomedicine Online 2009 (18 sup. 1):43-49.
    Some parents have taken steps to ensure that they have deaf children, a choice that contrasts with the interest that other parents have in enhancing the traits of their children. Julian Savulescu has argued that, morally speaking, parents have a duty to use assisted reproductive technologies to give their children the best opportunity of the best life. This view extends beyond that which is actually required of parents, which is only that they give children reasonable opportunities to form and act (...)
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  24. Beyond Physicalism and Idealism: Readings in From Brain to Cosmos.Mark F. Sharlow - manuscript
    This document consists primarily of an excerpt (chapter 13) from the author’s book From Brain to Cosmos. In that excerpt, the author presents a study of the notion of truth using the concept of subjective fact developed earlier in the book. The author argues that mind-body materialism is compatible with certain forms of metaphysical idealism. The chapter closes with some remarks on relativism with regard to truth. (This document depends heavily upon the concept of subjective fact developed in From Brain (...)
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  25. Do digital hugs work? Re-embodying our social lives online with digital tact.Mark M. James & John F. Leader - 2023 - Frontiers in Psychology 14 (910174):1-15.
    The COVID-19 pandemic led to social restrictions that often prevented us from hugging the ones we love. This absence helped some realize just how important these interactions are to our sense of care and connection. Many turned to digitally mediated social interactions to address these absences, but often unsatisfactorily. Some theorists might blame this on the disembodied character of our digital spaces, e.g., that interpersonal touch is excluded from our lives online. However, others continued to find care and connection in (...)
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  26. A Thought Experiment in Life Prolongation: The Tortoise Transformation.Timothy F. Murphy - 2013 - Journal of Bioethical Inquiry 12 (4):645–649.
    The value of extending the human lifespan remains a key philosophical debate in bioethics. In building a case against the extension of the species-typical human life, Nicolas Agar considers the prospect of transforming human beings near the end of their lives into Galapagos tortoises, which would then live on decades longer. A central question at stake in this transformation is the persistence of human consciousness as a condition of the value of the transformation. Agar entertains the idea that consciousness could (...)
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  27. The meadow, the sky, and the vision.Mark F. Sharlow - manuscript
    The year is 1965. A child stands at the top of a hill, looking out over a vast golden meadow. In the field below is a dirt trail. Bicycles sail by on the trail, carrying other children to their playful destinations. Beyond the far edge of the field is the sea. On the sea are boats and ships — distant descendants of the caravels and barkentines that once explored the unknown waters of Earth.
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  28. The afterlife of embryonic persons: what a strange place heaven must be.Timothy F. Murphy - 2012 - Reproductive Biomedicine Online 25:684-688.
    Some commentators argue that conception constitutes the onset of human personhood in a metaphysical sense. This threshold is usually invoked as the basis both for protecting zygotes and embryos from exposure to risks of death in clinical research and fertility medicine and for objecting to abortion, but it also has consequences for certain religious perspectives, including Catholicism whose doctrines directly engage questions of personhood and its meanings. Since more human zygotes and embryos are lost than survive to birth, conferral of (...)
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  29. Gay Science: Assisted Reproductive Technologies and the Sexual Orientation of Children.Timothy F. Murphy - 2005 - Reproductive Biomedicine Online 10 (Sup. 1):102-106.
    There are no technologies at the present time that would allow parents to select the sexual orientation of their children. But what if there were? Some commentators believe that parents should be able to use those techniques so long as they are effective and safe. Others believe that these techniques are unethical because of the dangers they pose to homosexual men and women in general. Both sides point to motives and consequences when trying to analyse the ethics of this question. (...)
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  30. Genetic modifications for personal enhancement: a defense.Timothy F. Murphy - 2013 - Journal of Medical Ethics (4):2012-101026.
    Bioconservative commentators argue that parents should not take steps to modify the genetics of their children even in the name of enhancement because of the damage they predict for values, identities and relationships. Some commentators have even said that adults should not modify themselves through genetic interventions. One commentator worries that genetic modifications chosen by adults for themselves will undermine moral agency, lead to less valuable experiences and fracture people's sense of self. These worries are not justified, however, since the (...)
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  31. The National Center for Biomedical Ontology.Mark A. Musen, Natalya F. Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne Story & Barry Smith - 2012 - Journal of the American Medical Informatics Association 19 (2):190-195.
    The National Center for Biomedical Ontology is now in its seventh year. The goals of this National Center for Biomedical Computing are to: create and maintain a repository of biomedical ontologies and terminologies; build tools and web services to enable the use of ontologies and terminologies in clinical and translational research; educate their trainees and the scientific community broadly about biomedical ontology and ontology-based technology and best practices; and collaborate with a variety of groups who develop and use ontologies and (...)
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  32. (1 other version)Adoption First? The Disposition of Human Embryos.Timothy F. Murphy - 2013 - Journal of Medical Ethics 40 (6):2013-101525.
    Anja Karnein has suggested that because of the importance of respect for persons, law and policy should require some human embryos created in vitro to be available for adoption for a period of time. If no one comes forward to adopt the embryos during that time, they may be destroyed (in the case of embryos left over from fertility medicine) or used in research (in the case of embryos created for that purpose or left over from fertility medicine). This adoption (...)
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  33. What's really wrong with the argument from design?Mark F. Sharlow - manuscript
    This document is an edited transcript of an impromptu talk by Mark F. Sharlow. In this talk, Dr. Sharlow examines one of the common arguments for God’s existence. He suggests that this argument is wrong, but not for the reason that skeptics usually cite. Instead, he points out a deeper error — and shows that by understanding this mistake, we can gain new insights into evolution and design.
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  34. Constitutive relevance & mutual manipulability revisited.Carl F. Craver, Stuart Glennan & Mark Povich - 2021 - Synthese 199 (3-4):8807-8828.
    An adequate understanding of the ubiquitous practice of mechanistic explanation requires an account of what Craver termed “constitutive relevance.” Entities or activities are constitutively relevant to a phenomenon when they are parts of the mechanism responsible for that phenomenon. Craver’s mutual manipulability account extended Woodward’s account of manipulationist counterfactuals to analyze how interlevel experiments establish constitutive relevance. Critics of MM argue that applying Woodward’s account to this philosophical problem conflates causation and constitution, thus rendering the account incoherent. These criticisms, we (...)
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  35. The directionality of distinctively mathematical explanations.Carl F. Craver & Mark Povich - 2017 - Studies in History and Philosophy of Science Part A 63:31-38.
    In “What Makes a Scientific Explanation Distinctively Mathematical?” (2013b), Lange uses several compelling examples to argue that certain explanations for natural phenomena appeal primarily to mathematical, rather than natural, facts. In such explanations, the core explanatory facts are modally stronger than facts about causation, regularity, and other natural relations. We show that Lange's account of distinctively mathematical explanation is flawed in that it fails to account for the implicit directionality in each of his examples. This inadequacy is remediable in each (...)
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  36. Poetry's Secret Truth.Mark F. Sharlow - manuscript
    Poetry, it is said, can reveal truth. Yet despite the best efforts of philosophers and poets to describe this truth, very few understand what kinds of truth poetry can convey.* One fact seems clear: only a few of the truths of poetry can be captured equally well in prose. Poetry also conveys truths of a different kind — truths that seem to exist on a level entirely different level from that of ordinary, factual truth. Some poems try to teach moral (...)
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  37. Tomorrow Is for Freedom.Mark F. Sharlow - manuscript
    The four talks in this collection are based on impromptu lectures by Mark Sharlow. Explores the topics of freedom, justice, punishment, capitalism, distributism, and the limits of government.
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  38. Which Systems Are Conscious?Mark F. Sharlow - manuscript
    This document consists primarily of an excerpt (chapter 14) from the author’s book From Brain to Cosmos. In that excerpt, the author uses the concept of subjective fact developed earlier in the book to address a question about consciousness: which physical systems (organisms or machines) are conscious? (This document depends heavily upon the concept of subjective fact developed in From Brain to Cosmos. Readers unfamiliar with that concept are strongly advised to read chapters 2 and 3 of From Brain to (...)
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  39. An Introduction to Subjective Facts: Readings in From Brain to Cosmos.Mark F. Sharlow - manuscript
    This collection serves as an introduction to the concept of subjective fact, which plays a central role in some of the author's philosophical writings. The collection contains two book chapters and a paper. The first chapter (Chapter 2 of From Brain to Cosmos) begins with an informal characterization of the concept of subjective fact. Then it fleshes out this concept with examples, gives a more precise characterization, and addresses some potential weaknesses of the concept. This chapter shows how subjective fact (...)
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  40. Time and Subjective Facts: Readings in From Brain to Cosmos.Mark F. Sharlow - manuscript
    This document consists primarily of excerpts (chapters 5 and 7-9) from the author’s book From Brain to Cosmos. These excerpts address some traditional philosophical problems about temporal flux and identity through time, using the concept of subjective fact that the author developed earlier in the book. (Readers unfamiliar with that concept are strongly advised to read chapters 2 and 3 of From Brain to Cosmos first. See the last page of this document for details on how to obtain those chapters.).
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  41. Knowledge of How Things Seem to You: Readings in From Brain to Cosmos.Mark F. Sharlow - manuscript
    This document consists primarily of an excerpt (chapter 4) from the author’s book From Brain to Cosmos. That excerpt presents a study of a specific problem about knowledge: the logical justification of one’s knowledge of the immediate past. (This document depends heavily upon the concept of subjective fact that the author developed in chapters 2 and 3 of From Brain to Cosmos. Readers unfamiliar with that concept are strongly advised to read those chapters first. See the last page of this (...)
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  42. Personal Identity and Subjective Time: Readings in From Brain to Cosmos.Mark F. Sharlow - manuscript
    This document consists primarily of an excerpt (chapter 5) from the author’s book From Brain to Cosmos. That excerpt presents an analysis of personal identity through time, using the concept of subjective fact that the author developed earlier in the book. (Readers unfamiliar with that concept are strongly advised to read chapters 2 and 3 of From Brain to Cosmos first. See the last page of this document for details on how to obtain those chapters.).
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  43. Because without Cause: Non-Causal Explanations in Science and Mathematics. [REVIEW]Mark Povich & Carl F. Craver - 2018 - Philosophical Review 127 (3):422-426.
    Lange’s collection of expanded, mostly previously published essays, packed with numerous, beautiful examples of putatively non-causal explanations from biology, physics, and mathematics, challenges the increasingly ossified causal consensus about scientific explanation, and, in so doing, launches a new field of philosophic investigation. However, those who embraced causal monism about explanation have done so because appeal to causal factors sorts good from bad scientific explanations and because the explanatory force of good explanations seems to derive from revealing the relevant causal (or (...)
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  44. God: the Next Version.Mark F. Sharlow - manuscript
    This short e-book is (in the author's words) "an attempt to open up new and better ways of thinking about God." The author draws together insights from philosophy of religion, philosophy of mind, and ontology to construct a conception of God that avoids both supernaturalism and simplistic forms of pantheism.
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  45. The unfinishable book.Mark F. Sharlow - manuscript
    This is not a normal book. It is a collection of transcripts of talks that I gave between the year 2003 and now. I gave most of these talks on the spur of the moment, without making notes ahead of time. (“Impromptu” is the usual term for that dangerous way of speaking.) One of the “talks” is not a transcript, but a set of notes for a talk I never gave. Any organization or order in the talks is purely coincidental—or (...)
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  46. Can machines have first-person properties?Mark F. Sharlow - manuscript
    One of the most important ongoing debates in the philosophy of mind is the debate over the reality of the first-person character of consciousness.[1] Philosophers on one side of this debate hold that some features of experience are accessible only from a first-person standpoint. Some members of this camp, notably Frank Jackson, have maintained that epiphenomenal properties play roles in consciousness [2]; others, notably John R. Searle, have rejected dualism and regarded mental phenomena as entirely biological.[3] In the opposite camp (...)
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  47. Beyond avatars and arrows: Testing the mentalizing and submentalizing hypotheses with a novel entity paradigm.Evan Westra, Brandon F. Terrizzi, Simon T. van Baal, Jonathan S. Beier & John Michael - forthcoming - Quarterly Journal of Experimental Psychology.
    In recent years, there has been a heated debate about how to interpret findings that seem to show that humans rapidly and automatically calculate the visual perspectives of others. In the current study, we investigated the question of whether automatic interference effects found in the dot-perspective task (Samson, Apperly, Braithwaite, Andrews, & Bodley Scott, 2010) are the product of domain-specific perspective-taking processes or of domain-general “submentalizing” processes (Heyes, 2014). Previous attempts to address this question have done so by implementing inanimate (...)
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  48. Cross-National Associations Among Cyberbullying Victimization, Self-Esteem, and Internet Addiction: Direct and Indirect Effects of Alexithymia.Sebastian Wachs, Alexander T. Vazsonyi, Michelle F. Wright & Gabriela Ksinan Jiskrova - 2020 - Frontiers in Psychology 11.
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  49. Harvesting the Promise of AOPs: An assessment and recommendations.Annamaria Carusi, Mark R. Davies, Giovanni De De Grandis, Beate I. Escher, Geoff Hodges, Kenneth M. Y. Leung, Maurice Wheelan, Catherine Willet & Gerald T. Ankley - 2018 - Science of the Total Environment 628:1542-1556.
    The Adverse Outcome Pathway (AOP) concept is a knowledge assembly and communication tool to facilitate the transparent translation of mechanistic information into outcomes meaningful to the regulatory assessment of chemicals. The AOP framework and associated knowledgebases (KBs) have received significant attention and use in the regulatory toxicology community. However, it is increasingly apparent that the potential stakeholder community for the AOP concept and AOP KBs is broader than scientists and regulators directly involved in chemical safety assessment. In this paper we (...)
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  50. The Ontology for Biomedical Investigations.Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H. Brush, Bill Bug, Marcus C. Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Frank Gibson, Alejandra Gonzalez-Beltran, Melissa A. Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez-Boussard, Mark Jensen, Yu Lin, Allyson L. Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A. Overton, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Daniel Schober, Barry Smith, Larisa N. Soldatova, Christian J. Stoeckert, Chris F. Taylor, Carlo Torniai, Jessica A. Turner, Randi Vita, Patricia L. Whetzel & Jie Zheng - 2016 - PLoS ONE 11 (4):e0154556.
    The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are conducted. OBI re-uses ontologies that provide a representation of biomedical knowledge from the Open Biological and Biomedical Ontologies (OBO) project and adds the ability to describe how this knowledge was derived. We here describe the state of OBI and several applications that are using it, such as adding semantic expressivity to (...)
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