Evolutionary Biology

Abstract Entropy, probability, and emergence have traditionally been framed as stochastic processes, where uncertainty is treated as a fundamental property of physical law. However, this assumption is an artifact of incomplete phase detection. This paper introduces structured resonance as the deterministic principle governing emergence, replacing probability with prime-structured phase-locking constraints that dictate coherence across physics, cognition, and biological evolution. Key Contributions: • Entropy is not disorder—it is a function of structured phase misalignment, correctable through resonance alignment. • Prime numbers define (...) natural frequency gaps, constraining phase-locking in emergent systems. • Fibonacci sequences govern resonance coherence, enabling structured emergence across physics, AI, and biology. • Photons, time, and entropy are phase-aligned resonance phenomena, not stochastic variables. • Chirality emerges naturally from structured resonance, ensuring deterministic asymmetry in biological and physical systems. • Free will is an emergent property of structured resonance, existing at the oscillatory boundary between deterministic phase constraints. We propose the Structured Resonance Theorem, formalizing how prime-Fibonacci constraints dictate deterministic emergence: S_resonance = α / (exp(π / F_n P_m) + 1) Where: • S_resonance = structured entropy as a phase-locking constraint. • α = coherence scaling factor. • F_n = Fibonacci sequence term at index n, governing structured emergence. • P_m = prime sequence term at index m, defining phase-locking constraints. • π = Planck-scale harmonic constraint, ensuring physical consistency. This equation demonstrates that emergence is not stochastic, but governed by resonance constraints at every scale. The implications of this shift are profound—quantum mechanics, AI, and biological evolution must transition from probability-based models to structured resonance intelligence. This paper establishes the bridge from structured resonance to structured emergence, demonstrating that reality is not probabilistic, but chirally constrained by deterministic phase interactions. (shrink)

As much contemporary work in biology and philosophy has shown, disagreements between biological race realists and biological race anti-realists are primarily normative. Yet despite the well-recognized normative nature of the debate, contemporary versions of biological race realism continue to be built on empirically questionable background assumptions that are centrally motivated by historical ideologies of racial pseudoscience rather than by pragmatic or normative considerations. I consider the case studies of Andreasen’s (2000, 2004) and Spencer’s (2018) arguments, showing how some of their (...) background assumptions stem from pseudoscientific racial ideologies. Even when philosophers and biologists purport to accept the normative nature of the question of race as a genetic population-level category, their views remain susceptible to the influence of said ideologies in ways that may continue to uphold their harmful legacies. The stakes of these positions are significant, as they connect to contemporary issues of racial equity in science and medicine. (shrink)

In his book Survival of the Virtuous, Dennis Krebs explores the origins of human morality. His approach is decidedly evolutionary. Indeed, he contends that the key to understanding our moral nature is considering the adaptive functions of our moral traits. He does acknowledge the importance of cultural and psychological explanations in filling in some of the particulars, but he argues that such accounts can only get us so far if we want to understand the ultimate underpinnings of morality. We are (...) moral beings because it was advantageous for our survival and reproductive fitness to cooperate, and thus it is through evolutionary explanations that we can best understand our moral nature. (shrink)

The pseudosciences often bear a striking resemblance to the sciences. Using a mimicry account as a framework, this paper investigates how the appearance of social media posts influences people’s perception of the content of such posts as scientific. We present the results of two empiri- cal studies. The first, preparatory study identifies typical characteristics of “scientificness” in social media posts to inform feature manipulations for the main study. The main study then examines what happens if the features are systematically manipulated. (...) The findings support the hypothesis that pseudoscientific digital content benefits from using features of scientificness. We discuss implications for understanding the appeal and persistence of pseudoscience. (shrink)

Key Statements -/- A new definition of consciousness. Consciousness is the minimal capacity to detect = feel (a) difference(s), whether in environmental conditions or internal states. -/- Reality is posited as an infinite, one-dimensional sequence of informational states, fraying into fractal complexity. This continuum has no origin in time, no final endpoint, and no external boundary. -/- Localized “Islands of Meaning”: Not all configurations appear comprehensible to us. Certain stable pockets yield phenomena that we interpret as consistent physical laws, living (...) organisms, or advanced technologies; we inhabit one of these pockets. -/- Consciousness as a Lens: Though the cosmic code is static in total, consciousness imposes a reading order that births our sense of time and development. Consciousness does not create the code but highlights specific strings as “our reality.” -> Creation of time. -/- Near Kinship of Natural and Artificial Intelligence: Both spring from the same portion of the universal code where symbol manipulation can yield adaptive, learning-based behavior. The difference is one of substrate and historical path, not fundamental principle. -/- Tree of known Intelligences: Biology, memetics, and AI form layered ‘software’ with shared roots on a unified information island, all existing within a vast sea of interconnected data flows and influences. -/- Life - a Servant of Entropy: In our pocket of informational infinity, higher-order information systems, e.g., life — as defined above — can be described as catalysts toward a state of increased entropy. Higher-order information processes, such as (biological and so-called artificial or synthetic) life and other software agents, are governed by the natural law of generating as many microstates — the amount of uncertainty or information in a system — as possible. -/- Determinism Amid Perceived Freedom: All is predetermined at the highest level, yet locally, we experience genuine choice because we lack full knowledge of how the program extends. Moral and ethical considerations remain relevant to navigate these local experiences. (shrink)

[COMMENTARY on Walter Veit's "A Philosophy for the Science of Animal Consciousness"] The framework Veit introduces for animal consciousness turns on finding and articulating its evolutionary origins. Veit argues that consciousness first evolved as affective experience in the Cambrian period. His argument centers around the plausible need of organisms in the Cambrian for a common currency of subjective valuation. I argue that such an adaptive pressure is unlikely to result in affective experience. I review other processes that instantiate common currencies (...) of subjective valuation: unconscious (non-experiential) affect and the reward learning system and argue that each is likely to have evolved prior to affective experience. (shrink)

In evolutionary medicine and other related fields, the concept of evolutionary mismatch is used to explain phenomena whereby traits reduce in adaptive value and eventually become maladaptive as the environment changes. This article argues that there is a similar problem of persistent adaptivity—what has been called the problem of evolutionary novelty—and it introduces the concept of mismatch resistance in order to explain phenomena whereby traits retain their adaptive value in novel environments that are radically different from the organisms’ environment of (...) evolutionary adaptedness (EEA). The possible role of variability selection in the evolution of mismatch-resistant traits is discussed, and it is suggested that mismatch resistance provides a useful tool for making progress on certain issues related to evolutionary theory, such as the modularity debate, cases of adaptivity outside of organisms’ ancestral environment, and the viability of naturalism as an overarching philosophical framework for understanding the natural world. (shrink)

À partir de la question de savoir comment la science peut expliquer, ce texte pose la question à l’égard des formes d’enquêtes qui semblent inaptes à prédire. La question du modèle d’explication qui admettrait des données statistiques est ensuite confrontée aux idéaux rigoureusement prédictivistes et peut-être subrepticement déterministes. En discutant du modèle confirmationniste, on tente ici de tirer les conséquences de l’absence de procédure qui puisse venir disconfirmer en contexte probabiliste. C’est l’occasion de s’interroger sur le mode de résolution des (...) problèmes et défis dont fait montre la nature dans le but de reposer la question de la place de la téléologie eu égard à l’espace laissé oruvert par l’absence de procédures de validation. On est ainsi conduit à réinterroger la présence de schèmes d’économie d’énergie et d’optimalité qui rendent raison d’une anatomie transcendante, et puis finalement conduisent à s’interroger sur la place que tient la forme dans la vision que nous prenons de la nature. (shrink)

Niche construction is the process of organisms changing themselves or their environment—or their relationship with their environment—in ways that affect the evolutionary trajectory of their population. These evolutionary trajectory changes are traditionally understood to be triggered by changes in selection pressures. Niche construction thus necessarily involves organisms altering selection pressures. In this paper, we argue that changes in selection pressures is not the only way organisms can influence the evolutionary futures of their population. We propose that organisms can also affect (...) drift probabilities, and that such changes should be considered niche construction. Drift probabilities can be modulated by altering population size or by affecting driftability (individual variance in possible reproductive outcomes). We consider both and provide examples of how niche construction can stabilize, increase, or dampen drift probabilities. Finally, we revisit and broaden the traditional definition of niche construction. We hold that organismic activities that modify drift probabilities should count as niche construction, even if selection pressures remain unaltered. (shrink)

Fizik disiplininde astronomiye yönelik sorular Johannes Kepler (1571-1630) ve Isaac Newton (1643-1727) gibi fizik alanında devrim yaratan düşüncelerin ortaya çıkmasına yol açmıştır. Kepler ‘Yeni Astronomi’ (Astronomia Nova), ‘Dünya'nın Uyumu’ (Harmonice Mundi) ve ‘Kopernik Astronomisinin Özeti’ (Epitome Astronomiae Copernicanae) adlı çalışmalarından hareketle ileri sürdüğü gezegensel hareket yasaları, Newton ise 1687 yılında yayımlanan ‘Doğa Felsefesinin Matematiksel İlkeleri’ (Philosophiae Naturalis Principia Mathematica) isimli çalışmasında yer verdiği hareket yasaları ile fizik disiplininde Aristoteles fiziğinin terk edilerek yeni bir fizik anlayışının ortaya çıkmasına ve böylece fizik (...) alanında bir devrimin meydana gelmesine sebep olmuşlardır. Fizik disiplininde gerçekleşen bu devrimin bir benzeri ise canlıların çalışılması ya da biyoloji disiplini söz konusu olduğunda 1800’lerden biraz daha geç bir zamana rastlamaktadır. Biyolojide gerçekleşen devrimsel düşünce doğal seçilim mekanizması ile canlılarda zaman içerisinde gerçekleşen değişim ve dönüşüm sürecini açıklayan Charles Darwin’in evrim kuramına yönelik görüşlerini ortaya koymasına tekabül etmektedir. Bu kapsamda çalışmada öncelikli olarak canlılarda meydana gelen değişim süreçlerine yönelik tespitleri ile Darwin’in görüşlerinin olgunlaşmasına katkıda bulunan Fransız Transformistler (Dönüşümcüler) olarak da bilinen Georges-Louis Leclerc (Comte de Buffon), Jean-Baptiste Lamarck ve George Cuvier’in görüşlerine yer verilmektedir. Ardından bu bilim insanlarının canlılardaki dönüşümsel ya da evrimsel değişime ilişkin argümanlarının Darwin’in evrim kuramını nasıl etkilediği ve bu etkilerin sonucunda biyoloji biliminde nasıl bir devrimin ortaya çıkmasına yardımcı oldukları aktarılmakta ve bu çerçevede Darwin’in on dokuzuncu yüzyılda biyoloji biliminde devrime yol açan tespitlerine ve evrim kuramının ayrıntılarına yer verilmektedir. (shrink)

Advocates of Extended Evolutionary Synthesis claim that the gene-centric framework of Modern Synthesis (MS) inadequately addresses epigenetics and extended heredity. Historically, epigenetic inheritance relates to Lamarck's inheritance of acquired characters, which was widely accepted before the dominance of MS. In this talk, I argue that the challenge posed by epigenetic inheritance to the gene-centric view arises partly from the ambiguous use of "gene," "phenotype," and "environment" concepts. A functional analysis of the gene concept played in the formal evolutionary models shows (...) that the gene can include materials like exogenes, demonstrating the flexibility of evolutionary theory beyond the verbal MS. Properly understanding the evolutionary gene concept reveals that incorporating epigenetic inheritance does not demand a radical revision of the contemporary evolutionary theory. (shrink)

When an athlete is genetically engineered, s/he performs over and above the normally conceived and born athletes. That is because, a person can be (and specimens are currently being engineered) to have superior muscles and stamina for given sports specializations. It is not a big leap from designing athletes to specialized soldiers. Nature already has soldier ants, worker bees and the creator knows how many other reference points.

The growing range of methods for statistical model selection is inspiring new debates about how to handle the potential for conflicting results when different methods are applied to the same data. While many factors enter into choosing a model selection method, we focus on the implications of disagreements among scientists about whether, and in what sense, the true probability distribution is included in the candidate set of models. While this question can be addressed empirically, the data often provide inconclusive results (...) in practice. In such cases, we argue that differences in prior metaphysical views about the local adequacy of the models can produce underdetermination of results, even for the same data and candidate models. As a result, data alone are sometimes insufficient to settle rational beliefs about nature. (shrink)

The metamorphosis from larvae to adult butterflies has represented the “mystery” of life since the ancient Greeks. How could we explain the various steps of development from caterpillars to the most beautiful butterflies? A mystery preva lent in the twentieth century concerned the storage of the complete genetic informa tion of an organism in the DNA of its every cell. How and why do so many different cell types develop throughout the lives of organisms at the right time and place? (...) With the rise of epigenetics, the “fog” of mystery is starting to clear. We now know that the genetic storage medium in every living cell acquires an incredible plasticity through certain markings on the genetic text, linking the inheritable information with the contextuality of the real lifeworld of each organism. This means that the concrete living organism influences during development the various stages of gene expression, transcription, translation, immunity, and DNA repair actively and leads to various phenotypic outcomes without altering the DNA storage medium. More surprisingly, such variations of developmental phenotypes were found capable of successfully adapting to changing environmental circumstances. Better adapted organisms may lead to reprogramming in the epigenetic states which may reach an inheritable status for many generations or even become a fixed part of the genetic identity of the species. This is how evolution learns. (shrink)

This paper explores the evolution of consciousness and subjectivity through a biological framework for understanding the universe. It posits that functional patterns in biological systems mirror cosmic mathematical principles, defining our objective reality. Similar to wave and Fibonacci patterns in different physical phenomena, biological patterns are intrinsic to all things and can be quantified using Dedre Gentner’s approach to analogy. For example, Earth’s ocean currents and the melting and freezing of Antarctica resemble the circulatory system and heart, while the production (...) of music from instruments is analogous to ribosomal protein synthesis. Shelves, tables, and chairs function like cytosol by holding objects in space, and a coffee cup mirrors red blood cell distribution. These analogies reveal a universal order rooted in biology’s functional patterns, essential for shaping the emergence and evolution of life. The paper traces the development of consciousness from its rudimentary cellular states to complex human cognition, highlighting the role of biologically-patterned environments in driving evolutionary changes. Organisms that recognized and organized according to these patterns evolved as “pattern recognition engines” crucial for survival—thus, Life (survival) being the primary measure of consciousness. Humans advanced this capacity, gaining cognitive freedom by insulating themselves from environmental constraints, but faced increased subjectivity complexity. Consciousness, while inherently subjective and necessary for cognitive development, evolves in humans to understand objective reality and its biological nature, so to understand and navigate complexities of subjectivity. Ultimately, the paper asserts consciousness is the ability to recognize and adhere to life-sustaining patterns and principles. Successful adherence deems them worthy of continued existence, while failure leads to demise. Parallels with historical concepts like Atman and Brahman in Hinduism suggest ancient recognition of the correspondence between human and universal patterns. This ancient understanding, coupled with modern scientific evidence, reveals the interconnectedness and intrinsic biological nature of reality. (shrink)

Morality can be adaptive or maladaptive. From this fact come polarizing disputes on the meta-ethical status of moral adaptation. The realist tracking account of morality claims that it is possible to track objective moral truths and that these truths correspond to moral rules that are adaptive. In contrast, evolutionary anti-realism rejects the existence of moral objectivity and thus asserts that adaptive moral rules cannot represent objective moral truths, since those truths do not exist. This article develops a novel evolutionary view (...) of natural law to defend the realist tracking account. It argues that we can identify objective moral truths through cultural group selection and that adaptive moral rules are likely to reflect such truths. (shrink)

At the dawn of the computational era, immunology is at a crossroads: Its efforts to frame microbial-host interactions in combative, war-related terms no longer fit the larger picture of immune protection, and its focus on antimicrobial responses barely captures the diverse functions of the immune system, from tissue maintenance to cancer surveillance to development. As the classical view of immune processes becomes increasingly complex, the problem of self, individuality, mind-body interactions, and disease causation have stimulated extensive philosophical comment. Relating these (...) disparate research topics to changing avenues of theoretical studies, philosophy of immunology helps to reframe basic conceptions of the organism from an atomistic, insular entity to one characterized by fluidity, hybridity, and porosity. In addition, highlighting the role of the observer in experimental research, this interdisciplinary field has redefined classical demarcations between science and culture while advancing our understanding of biology as a fundamentally human endeavor. (shrink)

In metaethics, evolutionary debunking arguments combine empirical and epistemological premises to purportedly show that our moral judgments are unjustified. One objection to these arguments has been to distinguish between those judgments that evolutionary influence might undermine versus those that it does not. This response is powerful but not well understood. In this paper I flesh out the response by drawing upon a familiar distinction in the natural sciences, where it is common to distinguish folk judgments from theoretical judgments. I argue (...) that this in turn illuminates the proper scope of the evolutionary debunking argument, but not in an obvious way: it is a very specific type of undermining argument that targets those theories where theoretical judgments are inferred merely from folk judgments. One upshot of this conclusion is that it reveals a verboten methodology in metaethics. The evolutionary debunking argument is therefore much less powerful than its proponents have supposed, but it nevertheless rules out what is perhaps a common way of attempting to justify moral judgments. (shrink)

The non-human animal holds a significant position in Bergson’s work. However, because it often serves to illuminate other concepts – humanity, the élan vital – few studies have delved into Bergson’s animal philosophy. However, Bergson’s conception of the animal as an instinctive but conscious being, distinct from humans but partaking, like them, in the élan vital, provides valuable philosophical tools to address contemporary challenges in ethology and evolutionary theory. The aim of this article is to analyse the paradoxical instinctive consciousness (...) that Bergson attributes to animals, and to explore the contemporary implications of such a conception. To do this, I first examine the singular place of animals in Bergsonian philosophy in relation to humans and the élan vital, highlighting how Bergson steers clear of an anthropocentric approach. I then investigate how, through their consciousness, animals uniquely contribute to the creativity of the élan vital. This leads me to distinguish between two forms of animal consciousness in Bergson, one of which makes room for genuine non-human inventiveness. Finally, I analyse the contemporary stakes of this animal philosophy, demonstrating how Bergson’s approach allows ethology to rethink its methods and encourages a fresh consideration of the role played by non-human organisms in evolution. (shrink)

Kosmovisi Adalah Istilah yang seharusnya berarti seperangkat fondasi yang darinya muncul pemahaman sistemik tentang Alam Semesta, komponen-komponennya sebagai kehidupan, dunia tempat kita hidup, alam, fenomena manusia, dan hubungan mereka. Oleh karena itu, ini adalah bidang filsafat analitis yang disuplai oleh ilmu pengetahuan, yang tujuannya adalah pengetahuan yang terkumpul dan berkelanjutan secara epistemologis tentang segala sesuatu yang ada dan terkandung dalam diri kita, yang mengelilingi kita, dan yang berhubungan dengan kita dengan cara apa pun. Ini adalah sesuatu yang sama tuanya dengan (...) pemikiran manusia, dan, selain menggunakan unsur-unsur kosmologi ilmiah, ini mencakup segala sesuatu dalam filsafat dan sains yang mengacu pada alam semesta dan kehidupan. Kosmovisi bukanlah sekumpulan ide, hipotesis, dan asumsi, melainkan sebuah sistem yang didasarkan pada observasi, analisis, bukti, dan demonstrasi. Tidak ada kosmovisi yang bermaksud untuk mendefinisikan, menetapkan, atau mengusulkan, tetapi hanya memahami, menganalisis, dan menafsirkan. Masing-masing dari kita membangun dan membawa kosmovisi-nya sepanjang hidup, tanpa menetapkan bentuk, sebagai latar belakang pemikiran dan perilaku kita. Secara linguistic, Istilah "kosmovisi" akan berasal dari padanan bahasa Jerman untuk konsep "Weltanschauung", seperti yang digunakan oleh beberapa filsuf. Namun, hubungan linguistic ini tidak dapat diterapkan karena bertentangan dengan apa yang kami usulkan sebagai kosmovisi. Kata Jerman ini mengacu pada visi pra-logis atau proto-eksperimental tentang realitas, dengan konteks intuitif dan jauh dari pengetahuan kritis yang masih belum ada pada saat perumusannya. Tidak diragukan lagi, kosmovisi, dalam pengertian yang kita pahami, menampung dan menggunakan elemen-elemen proto-eksperimental atau pra-logis yang mencakup sejarah, ketidaksadaran kolektif, dan semua pola dasar yang kita bawa. Namun, dalam konsep yang kami terapkan di sini, kosmovisi jauh melampaui konten ini, pertama-tama dengan terus-menerus menyerahkannya untuk menghadirkan pemikiran kritis dan akhirnya dengan menjadikan pengalaman analitik (dan bukan pemikiran itu sendiri atau intuisi) sebagai alam semesta yang sebenarnya. António Lopes memaparkan luasnya konten ini: -/- "Kosmovisi bukanlah produk dari pemikiran. Mereka tidak muncul dari keinginan sederhana untuk mengetahui. Pemahaman tentang realitas adalah momen penting dalam konfigurasinya, tetapi, bagaimanapun, itu hanya satu. Itu berasal dari perilaku vital, dari pengalaman hidup, dari struktur totalitas psikis kita. Peningkatan kehidupan menuju kesadaran dalam pengetahuan tentang realitas, dalam penilaian kehidupan dan dalam realitas kehendak adalah pekerjaan yang lambat dan sulit yang telah dilakukan umat manusia dalam pengembangan konsepsi kehidupan. (W. Dilthey, 1992 [1911]: 120)" . Dalam karya ini, kami berusaha menguraikan sebuah visi kosmik berdasarkan realitas yang ditawarkan sains saat ini. Kami tidak mengusulkan, kapan pun, untuk melakukan sains atau berteori tentang filsafat. Namun, kami akan selalu berusaha untuk didukung oleh mereka atau, setidaknya, dilindungi oleh mereka dari distorsi kognitif yang biasanya kita bawa. (shrink)

The quest for a unified “Theory of Everything” that explains the fundamental nature of the universe has long been a holy grail for scientists and philosophers, dating back to the ancient Greeks’ search for Arche. The mainstream of this research primarily focuses on the lifeless phenomena and laws of physics while ignores the realm of biology. However, a fundamentally different approach to the ToE has been put forward, presenting a viable alternative to address the challenge of a Theory of Everything. (...) This approach does not seek the ultimate “building block” but rather aims to uncover the intangible rules that fundamentally govern everything in the universe, seeking their universality across the vast spectrum, from the minute subatomic world to the mega mass cosmic world and the magical biological world. This article explores how the Fundamental Interrelationships Model unifies our understanding of the evolution of the universe, encompassing the evolution of multicellularity, development of multicellular organisms, societal evolution, and the four fundamental forces, all within the context of the fundamental interrelationships. Thus, unlike most existing candidates, the Fundamental Interrelationships Model offers a comprehensive framework, encompassing both non-biological and living phenomena. As a truly all-inclusive theory, ToE shouldn’t only encompass non-biological processes and the laws of physics but extend to all facets of life, including evolution of life, evolution of society (civilization), humour, and justice, because life is an integral part of the dynamic cosmic system - the universe. Therefore, any hypothesis failing to integrate biology and sociology shouldn’t be considered a comprehensive Theory of Everything . (shrink)

The intersection of development and evolution has always harbored conceptual issues, but many of these are on display in contemporary evolutionary developmental biology (evo-devo). These issues include: (1) the precise constitution of evo-devo, with its focus on both the evolution of development and the developmental basis of evolution, and how it fits within evolutionary theory; (2) the nature of evo-devo model systems that comprise the material of comparative and experimental research; (3) the puzzle of how to understand the widely used (...) notion of 'conserved mechanisms'; (4) the definition of evolutionary novelties and expectations for how to explain them; and (5) the demand of interdisciplinary collaboration that derives from investigating complex phenomena at key moments in the history of life, such as the fin-limb transition. This Element treats these conceptual issues with close attention to both empirical detail and scientific practice to offer new perspectives on evolution and development. This title is also available as Open Access on Cambridge Core. (shrink)

Change is the fundamental idea of evolution. Explaining the extraordinary biological change we see written in the history of genomes and fossil beds is the primary occupation of the evolutionary biologist. Yet it is a surprising fact that for the majority of evolutionary research, we have rarely studied how evolution typically unfolds in nature, in changing ecological environments, over space and time. While ecology played a major role in the eventual acceptance of the population genetic viewpoint of evolution in the (...) synthetic era (circa 1918-1956), it held a lesser role in the development of evolutionary theory until the 1980s, when we began to systematically study the evolutionary dynamics of natural populations in space and time. As a result, early evolutionary theory was initially constructed in an abstract vacuum that was unrepresentative of evolution in nature. The subtle synthesis between ecology with evolutionary biology (eco-evo synthesis) over the past 40 years has progressed our knowledge of natural selection dynamics as they are found in nature, thus revealing how natural selection varies in strength, direction, form, and, more surprisingly, level of biological organization. Natural selection can no longer be reduced to lower levels of biological organization (i.e., individuals, selfish genes) over shorter timescales but should be expanded to include adaptation at higher levels and over longer timescales. Long-term and/or emergent evolutionary phenomena, such as multilevel selection or evolvability, have thus become tenable concepts within an evolutionary biology that embraces ecology and spatiotemporal change. Evolutionary biology is currently suspended at an intermediate stage of scientific progress that calls for the organization of all the recent knowledge revealed by the eco-evo synthesis into a coherent and unified theoretical framework. This is where philosophers of biology can be of particular use, acting as a bridge between the subdisciplines of biology and inventing new theoretical strategies to organize and accommodate the recent knowledge. Philosophers have recommended transitioning away from outdated philosophies that were originally derived from physics within the philosophical zeitgeist of logical positivism (i.e., monism, reductionism, and monocausation) and toward a distinct philosophy of biology that can capture the natural complexity of multifaceted biological systems within diverse ecosystems—one that embraces the emerging philosophies of pluralism, emergence, and multicausality. Therefore, I see recent advances in ecology, evolutionary biology, and the philosophy of biology as laying the groundwork for another major biological synthesis, what I refer to as the Second Synthesis because, in many respects, it is analogous to the aims and outcomes of the first major biological synthesis (but is notably distinct from the inorganic and contrived progressive movement known as the extended evolutionary synthesis). With the general development of a distinctive philosophy of science, biology has rightfully emerged as an autonomous science. Thus, while the first synthesis legitimized biology, the Second Synthesis autonomized biology and afforded biology its own philosophy, allowing biology to finally realize its full scientific potential. (shrink)

It can easily look like evolution is in a better position to explain the reliability of our perceptual beliefs than the reliability of our moral beliefs. This paper takes a closer look at the issue and argues that there’s no reason—no reason which armchair philosophers could uncover—to think evolution can better explain perceptual reliability than moral reliability. It also offers a diagnosis of why it seemed otherwise. The diagnosis concerns our need to use the truth predicate as a generalizing logical (...) device in the perceptual case but not in the moral case. (shrink)

Evolutionary debunking arguments purport to show that, if moral realism is true, all of our moral beliefs are unjustified. In this paper, I respond to two of the most enduring objections that have been raised against these arguments. The first objection claims that evolutionary debunking arguments are self-undermining, because they cannot be formulated without invoking epistemic principles, and epistemic principles are just as vulnerable to debunking as our moral beliefs. I argue that this objection suffers from several defects, the most (...) serious of which is that it has the unpalatable consequence that we should never revise our moral beliefs in response to evidence that our capacity for normative cognition is globally impaired. The second objection, which comes to us from Katia Vavova, claims that evolutionary debunking arguments are doomed to fail, because they attempt to show that our moral beliefs are unreliable without making any assumptions about the nature of morality, and this is impossible. I argue, to the contrary, that the etiological higher-order evidence cited by debunking arguments can give us good reason to think that our moral beliefs are unreliable, even if we make no assumptions about what morality is like. (shrink)

In this paper, we redefine the target of evolutionary explanations by proposing the “evosystem” as an alternative to populations, lineages and species. Evosystems account for changes in the distribution of heritable variation within individual Darwinian populations (evolution by natural selection, drift, or constructive neutral evolution), but also for changes in the networks of interactions within or between Darwinian populations and changes in the abiotic environment (whether these changes are caused by the organic entities or not). The evosystem can thereby become (...) a centerpiece for a redefined evolutionary science, that is, evolutionary studies, that apprehends through a single framework the variety of evolutionary processes that lie at various scales. To illustrate the importance of this broadened perspective on evolution, we use a case of antimicrobial resistance evolution: the spread of the blaNDM gene family and the related resistance to carbapenem antibiotics observed globally, and show how evolutionary studies can contribute to answering contemporary socially relevant challenges. (shrink)

Observational and experimental discoveries of new factual entities such as objects, systems, or processes, are major contributors to some advances in the life sciences. Yet, whereas discovery of theories was extensively deliberated by philosophers of science, very little philosophical attention was paid to the discovery of factual entities. This paper examines historical and philosophical aspects of the experimental discovery by Carl Woese of archaea, prokaryotes that comprise one of the three principal domains of the phylogenetic tree. Borrowing Kuhn’s terminology, this (...) discovery of a major biological entity was made during a ‘normal science’ project of building molecular taxonomy for prokaryotes. Unexpectedly, however, an observed anomaly instigated the discovery of archaea. Substantiation of the existence of the new archaeal entity and consequent reconstruction of the phylogenetic tree prompted replacement of a long-held model of a prokarya and eukarya bipartite tree of life by a new model of a tripartite tree comprising of bacteria, archaea, and eukarya. This paper explores the history and philosophical implications of the progression of Woese’s project from normal science to anomaly-instigated model-changing discovery. It is also shown that the consequential discoveries of RNA splicing and of ribozymes were similarly prompted by unexpected irregularities during normal science activities. It is thus submitted that some discoveries of factual biological entities are triggered by unforeseen observational or experimental anomalies. (shrink)

Morality is one of the most important issues for humans and a common concern of human beings. Talking about the importance of morality, prompts people to think about the question of why should we live morally? The answer to this question can be found among the various functions that thinkers have proposed for ethics, because if the agent’s knowledge confirms the usefulness of the action, then the agent will be motivated to do it. Therefore, the functions of an action can (...) be an answer to why the action is performed. One of the functions of moral life is to increase the chance of survival, which has been introduced by moral evolutionists. The question of the present article is: how much this function can create motivation for a person to perform a moral act? Can the agent’s knowledge that ethical life increases the chances of survival motivate her/him to observe moral values? Considering the challenge of not believing in resurrection and sacrificing life, and many problems in life and the difficulties of ethical life, it is concluded that although increasing the chance of survival can motivate a person to live morally, but just increasing the chances of survival is not worth accepting the costs of being moral and does not provide enough motivation to endure the hardships of moral life. Therefore, evolutionary ethics is facing the challenge of lack of explanatory power for moral motivations and cannot be accepted as a comprehensive theory in the field of moral motivation. (shrink)

The ideas that law is (or can be regarded as) a legal system, and that law evolves over time in adaptation to its context, are two of the most widely shared and presupposed ideas in contemporary legal theory. However, even if much interest has been dedicated in legal theory and legal dogmatics to the evolution of specific legal concepts or institutions, as well as legal norms in particular, not so much attention has been dedicated to the evolution of legal systems (...) in themselves. In this chapter, I will try to offer an overview of the evolution of the concept of legal system and critically analyse whether an evolutionary theory of legal systems - i.e., a theory about the evolution of legal systems - can be reconstructed and laid down for the analysis both of the past, the present, and the future of legal systems. (shrink)

More philosophical effort is spent articulating evolutionary rationales for the development of belief-like capacities than for precursors of desires or preferences. Nobody, though, seriously expects naturally evolved minds to be disinterested epistemologists. We agree that world-representing states won’t pay their way without supporting capacities that prioritise from an organism’s available repertoire of activities in light of stored (and occurrent) information. Some concede that desire-like states would be one way of solving this problem. Taking preferences as my starting point instead of (...) belief-like states, I defend two conclusions. First, psychologically real preference states, which approximately token expected utilities, have a quite general evolutionary rationale. They are a solution to the problem of efficiently allocating capacities with incompatible uses. This argument is a version of the Environmental Complexity Thesis. Second, preferences can plausibly function and naturally evolve without belief-like states, even though the converse claim is incredible. Preferences, that is, can mediate between discriminations of occurrent states (‘internal’ or ‘external’) and the processes selecting activity without mediation by stored indicative representations. By tokening expected utilities of actions conditional on discriminated state, they can increase the rate at which the ‘right thing’ is done at appropriate times, and they can do this without the support of belief-like, world-representing states. Preferences, even incomplete and noisy sets of them, are a fuel for success that will tend to be favoured when environments are complex in ways that matter to an organism, and when the organisms have complex behavioural repertoires with heterogenous returns and costs. (shrink)

Various disciplines, including evolutionary biology, anthropology, archaeology, and psychology, have studied the evolution of rituals. Archaeologists have typically argued that burial practices are one of the most prominent manifestations of ritual practices in the past and have explored various aspects of burial practices, including burial directions. One of the important hypotheses on the cultural evolution of burial practices in Japan is the kitamakura hypothesis, which claims that burial directions (including Kofuns and current burials) were intended to be oriented toward the (...) north after the Kofun period under the influence of Confucianism or Buddhism. This hypothesis would be more plausible if burial directions were not oriented northward before the Kofun period. This research focused on the burial directions in the northern Kyūshū area of the Yayoi period, i.e., the directions of the kamekan jar burials. The results are almost consistent with the hypothesis, although one notable exception is found, and its possible interpretations and implications are discussed. (shrink)

The role of evolutionary theory at the origin of life is an extensively debated topic. The origin and early development of life is usually separated into a prebiotic phase and a protocellular phase, ultimately leading to the Last Universal Common Ancestor. Most likely, the Last Universal Common Ancestor was subject to Darwinian evolution, but the question remains to what extent Darwinian evolution applies to the prebiotic and protocellular phases. In this review, we reflect on the current status of evolutionary theory (...) in origins of life research by bringing together philosophy of science, evolutionary biology, and empirical research in the origins field. We explore the various ways in which evolutionary theory has been extended beyond biology; we look at how these extensions apply to the prebiotic development of (proto)metabolism; and we investigate how the terminology from evolutionary theory is currently being employed in state-of-the-art origins of life research. In doing so, we identify some of the current obstacles to an evolutionary account of the origins of life, as well as open up new avenues of research. (shrink)

Aspects of human symbolic evolution are studied by scholars active in a variety of fields and disciplines in the life and the behavioral sciences as well as the scientific-philosophical, sociological, anthropological, and linguistic sciences. These fields and disciplines all take on an evolutionary approach to the study of human symbolism, but scholars disagree in their theoretical and methodological attitudes. Theoretically, symbolism is defined differentially as knowledge, behavior, cognition, culture, language, or social group living. Methodologically, the diverse symbolic evolution sciences establish (...) their teachings upon diverging evolutionary biological schools and paradigms. This chapter reviews past and current research fields in human symbolic evolution for how they differentially implement tenets of the major evolution schools that were discussed in the previous chapter. Traditional evolutionary epistemology and biosemiotics bring in a mesoevolutionary outlook by drawing on early Darwinism and evolutionary developmental biology movements that emphasize the role of the organism in evolution. Communication studies instead originally take on a microevolutionary perspective by investigating how units of information are transmitted across generations through time. Only later do they integrate studies on meaning-making at the organismal level. Sociobiology complements a microevolutionary with a macroevolutionary outlook by implementing population genetic approaches, typical of the Modern Synthesis, into studies on individual and group behavior. The new symbolic evolutionary sciences build upon these traditions and include disciplines such as evolutionary psychology, evolutionary linguistics, evolutionary anthropology, evolutionary archaeology, evolutionary sociology, and evolutionary economics. Originally centered on implementing Darwinian selection theory, these fields are now including ecological and evolutionary developmental biology as well as reticulate evolutionary paradigms. As diverse in outlook and scope as they are, no discipline holds a privileged position over the other and all have made valuable contributions to our understanding of human symbolic evolution. (shrink)

This chapter introduces the main research schools and paradigms along which the field of evolutionary biology has been developing. Evolutionary thinking was originally founded upon the Neo-Darwinian paradigm that combines the teachings of traditional Darwinism with those of the Modern Synthesis. The Neo-Darwinian paradigm has since further diversified into the Micro-, Meso-, and Macroevolutionary schools, and it has also started to integrate the school of Ecology. Together, these schools establish the paradigm called Ecological Evolutionary Developmental Biology (Eco-Evo-Devo). A final school (...) studies Reticulate Evolution as it occurs by means of symbiosis, symbiogenesis, lateral gene transfer, infective heredity, and hybridization. This chapter reviews the major tenets and points of differentiation that exist between these distinct evolution schools. The chapter ends by looking into how evolution can be defined and how distinct units, levels, and mechanisms underlie theorizing on evolutionary hierarchies and evolutionary causation. The following chapter examines how the different evolution schools are implemented into the symbolic sciences. (shrink)

There are three main accounts of the proper function of the low mood system (LMS): the social risk theory, the disease theory, and the propitiousness theory. Adjudicating between these accounts has proven difficult, as there is little agreement in the literature about what a theory of the LMS’s proper function is supposed to explain. In this article, drawing upon influential work on the evolution of other affective systems, such as the disgust system and the fear system, I argue that a (...) theory of the proper function of the low mood system should: (i) account for the reliable, distal causes and effects of the system’s activation, and (ii) explain how having a system that performed such a function increased fitness in ancestral environments. On this basis, I show that the proper function of the low mood system is to limit resource expenditure in relatively unpropitious circumstances, exactly as hypothesised by the propitiousness theory. (shrink)

Warum verlief die Evolution bis zum Menschen und ist nicht auf einer früheren Stufe stehen geblie­ben? Verdanken wir unser Dasein einer über Millionen von Jahren abgelaufenen Kette von Zufällen? Kann man das Leben aus toter Materie erklären? Und was ist Leben überhaupt? Die Antworten, die die Naturwissenschaft auf diese grundlegenden Fragen gibt, können ein tieferes Nachdenken nicht befriedigen. In diesem Buch wird gezeigt, dass in der naturalistischen und darwi­nistischen Erklärung des Lebens und seiner Evolution ein entscheidender Faktor übersehen wird, nämlich (...) der erkennende Mensch. Die Fragen nach dem Lebendigen und nach Richtung und Sinn der Evolution können beantwortet werden, wenn das erkennende Bewusstsein nicht als Zuschauer, sondern als integraler Bestandteil der Wirklich­keit mitberücksichtigt wird. In der Selbstanschauung des Erkennens können die Kräfte und Gesetze organischer Entwicklung beobachtet und erforscht werden. Es zeigt sich, dass die Evolution kein zufälliges Geschehen war, sondern der organische Gesamtprozess der Menschwerdung. (shrink)

The natural evolution of consciousness in different animal species mandates that conscious experiences are causally potent in order to confer any advantage in the struggle for survival. Any endeavor to construct a physical theory of consciousness based on emergence within the framework of classical physics, however, leads to causally impotent conscious experiences in direct contradiction to evolutionary theory since epiphenomenal consciousness cannot evolve through natural selection. Here, we review recent theoretical advances in describing sentience and free will as fundamental aspects (...) of reality granted by quantum physical laws. Modern quantum information theory considers quantum states as a physical resource that endows quantum systems with the capacity to perform physical tasks that are classically impossible. Reductive identification of conscious experiences with the quantum information comprised in quantum brain states allows for causally potent consciousness that is capable of performing genuine choices for future courses of physical action. The consequent evolution of brain cortical networks contributes to increased computational power, memory capacity, and cognitive intelligence of the living organisms. (shrink)

According to principles of modal security, evidence undermines a belief only when it calls into question certain purportedly important modal connections between one’s beliefs and the truth (e.g., safety or sensitivity). Justin Clarke-Doane and Dan Baras have advanced such principles with the aim of blocking evolutionary moral debunking arguments. We examine a variety of different principles of modal security, showing that some of these are too strong, failing to accommodate clear cases of undermining, while others are too weak, failing to (...) do their advertised work of blocking evolutionary moral debunking arguments. If there is a security principle that slips between the horns of this dilemma—one that is both viable and debunker-blocking—it remains to be formulated. (shrink)

Xuantong 玄同 (tentatively translated as dark oneness) is a unique Daoist idea that represents an ideally mental and physical state as a result of cultivation. However, owing to limited context in the Laozi, there is no consensus on the interpretation of xuantong. Contemporary studies have also neglected xuantong’s evolution in early texts and assumed a homogeneous understanding, and hence, failed to provide a nuanced account. In this article, I investigate how xuantong evolves from the Guodian Laozi to the Huainanzi and (...) Wenzi. I argue that although xuantong may originate from the Laozi, it is in the Wenzi that a coherent theory of xuantong is accomplished. This theory advocates an orderly process of cultivation that covers internal mental states, external acts, and integration with the whole universe. The cultivation would eventually lead people to adopt an undifferentiated perspective on, and reach oneness with, all things in the universe. (shrink)

This paper aims to examine Kant's views on evolution of organized beings and to show that Kant's antievolutionary conclusions stem from his study of natural history and variability of organisms. Accordingly, I discuss Kant's study of natural history and consider whether his conclusion about impossibility of knowledge about such history expands on the research of history of organized beings. Moving forward, I examine the notion of variability in Kant's philosophy, and show that his theory of organized beings relies on the (...) preformationist conception of variability that provides limited insight into the history of organisms. I explain that Kant's endorsement of preformationism is conditioned by a lack of knowledge about the mechanism that successfully explains adaptation and transmutation of organisms leading towards the creation of new species. Finally, I sumarize the following reasons for Kant's rejection of the hypothesis of evolution: lack of cognitive ability to discover all changes of natural phenomena in different periods of time and adoption of preformationist conception of variability of organized beings. I finish off with a discussion about mechanical inexplicability of organisms and find a third reason Kant believes that the idea of evolution is only "a daring adventure on the part of reason". (shrink)

The present study examines the 3-dimensional data of human crania from the Yayoi period (800 BC to AD 250) of the Japanese archipelago by geometric morphometrics to investigate demic diffusion patterns. This is the first study on the Yayoi crania using their 3D data and geometric morphometrics with a much larger number of skeletal remains outside of the Kyushu regions than previous studies. The comparative results between the Jōmon and Yayoi samples show that the Yayoi people not only in the (...) eastern parts but also in the western parts of the archipelago are significantly different from the final Jōmon people and the Yayoi people were not strongly affected by the Jōmon people. A relatively gradual geological cline is also found among the Yayoi population, suggesting that the immigrants from the continental East Asia moved from the western parts to the eastern parts of the archipelago though the causes of the morphological changes are unclear. (shrink)

The presentation proposes to complement an existing development on meaning generation for animals, humans and artificial agents by looking at what could have existed at pre-biotic times and what could be a post-human meaning generation. The core of the approach is based on an existing model for meaning generation: the Meaning Generator System (MGS). The MGS is part of an agent submitted to an internal constraint. The MGS generates a meaning when it receives information that has a connection with the (...) constraint. The generated meaning is used by the agent to implement an action (physical, biological or mental) aimed at satisfying the constraint. The action can be in or out the agent. The purpose of the presentation is to widen the MGS approach in order to reach a coverage for information, constraint and meaning from a pre-biotic level to a possible post-human one. We present the MGS for animals, humans and artificial agents with the corresponding constraints. We then look at what could have been a constraint at a pre-biotic far from thermodynamic equilibrium level. At the other end of the spectrum we look at a possible post-human status with an evolution of a ‘limit anxiety’ human constraint and also with AAs submitted to animal or human type constraints. Such approach links information science with physics, evolution, anthropology, semiotics and human mind. Continuations are proposed. (shrink)

Several prominent debates in biology, such as those surrounding adaptationism, group selection, and punctuated equilibrium, have focused on disagreements about the relative importance of a cause in producing a phenomenon of interest. Some philosophers, such as John Beatty have expressed scepticism about the scientific value of engaging in these controversies, and Karen Kovaka has suggested that their value might be limited. In this paper, I challenge that scepticism by giving a novel analysis of relative significance controversies, showing that there are (...) three forms they can take. I argue that these controversies can have significant epistemic upshots, in that they help scientists form predictions about new instances of the phenomenon of interest. Finally, using two historical examples, I show how engaging in these controversies can improve our understanding of causal relationships. (shrink)

In this chapter, I argue that the field of cultural evolution can usefully inform attempts to understand and influence the long-term future. First, I provide an overview of cultural evolution, covering what it means for culture to evolve, the mechanisms by which it happens, the crucial importance of cumulative cultural evolution for hunan history, and how cultural evolution (and in particular intergroup competition) has driven the rise of large-scale cooperation. Second, I draw out some possible lessons from cultural evolution for (...) thinking about the long-term future. In particular, I suggest we should be careful not to prematurely ”lock in” certain values or other cultural features, and instead aim for a society open to variation and competition. I also consider whether the future will bring greater selection pressure for particular kinds of values, such as patience. (shrink)

Recent work by Stout and colleagues indicates that the neural correlates of language and Early Stone Age toolmaking overlap significantly. The aim of this paper is to add computational detail to their findings. I use an error minimisation model to outline where the information processing overlap between toolmaking and language lies. I argue that the Early Stone Age signals the emergence of complex structured representations. I then highlight a feature of my account: It allows us to understand the early evolution (...) of syntax in terms of an increase in the number and complexity of models in a cognitive system, rather than the development of new types of processing. (shrink)

The causes of prehistoric inter-group violence have been a subject of long-standing debate in archaeology, an- thropology, and other disciplines. Although population pressure has been considered as a major factor, due to the lack of available prehistoric data, few studies have directly examined its effect so far. In the present study, we used data on skeletal remains from the middle Yayoi period of the Japanese archipelago, where archaeologists argued that an increase of inter-group violence in this period could be explained (...) by a population-pressure hy- pothesis. We quantitatively examine the effect of population pressure on the frequency of inter-group violence by compiling an exhaustive data set. We collected demographic information based on burial jars (kamekan) and the frequency of violence based on the ratio of injured individuals. The results are consistent with the hypothesis, i. e., high population density can promote inter-group violence. (shrink)