Do neurobiologists aim to discover natural kinds? I address this question in this chapter via a critical analysis of classification practices operative across the 43-year history of research on long-term potentiation (LTP). I argue that this 43-year history supports the idea that the structure of scientific practice surrounding LTP research has remained an obstacle to the discovery of natural kinds.

When once-successful physical theories are abandoned, common wisdom has it that their characteristic theoretical entities are abandoned with them: examples include phlogiston, light rays, Newtonian forces, Euclidean space. But sometimes a theory sees ongoing use, despite being superseded. What should scientific realists say about the characteristic entities of the theories in such cases? The standard answer is that these ‘theoretical relicts’ are merely useful fictions. In this paper we offer a different answer. We start by distinguishing horizontal reduction (in which (...) a superseded theory approximates the successor theory) from vertical reduction (in which a higher-level theory abstracts away from the lower-level theory, but nonetheless can be constructed from it); these are usually regarded as having different ontological consequences. We describe a ‘verticalization’ procedure which transforms horizontal reductions into vertical reductions. The resulting verticalized theories are abstractions rather than approximations, with restricted domains. We identify a sense in which the higher-level theory describes distinct subject matters from the lower-level theory, enabling in certain cases the higher-level theory to retain distinctive explanatory power even in the presence of reduction. We suggest that theoretical entities from superseded theories should be retained in a scientific realist worldview just when, reinterpreted as higher-level abstractions, those theories and their characteristic entities continue to perform distinctive explanatory work in providing the best explanation for less-fundamental phenomena of interest. In slogan form: a good relict is an emergent relict. (shrink)

The relational interpretation of quantum mechanics proposes to solve the measurement problem and reconcile completeness and locality of quantum mechanics by postulating relativity to the observer for events and facts, instead of an absolute “view from nowhere”. The aim of this paper is to clarify this interpretation, and in particular, one of its central claims concerning the possibility for an observer to have knowledge about other observer’s events. I consider three possible readings of this claim, and develop the most promising (...) one, relativism, to show how it fares when confronted with the traditional interpretative problems of quantum mechanics. Although it provides answers to some problems, I claim that there is currently no adapted locality criterion to evaluate whether the resulting interpretation is local or not. (shrink)

Most scientific models are not physical objects, and this raises important questions. What sort of entity are models, what is truth in a model, and how do we learn about models? In this paper I argue that models share important aspects in common with literary fiction, and that therefore theories of fiction can be brought to bear on these questions. In particular, I argue that the pretence theory as developed by Walton (1990, Mimesis as make-believe: on the foundations of the (...) representational arts. Harvard University Press, Cambridge/MA) has the resources to answer these questions. I introduce this account, outline the answers that it offers, and develop a general picture of scientific modelling based on it. (shrink)

It is often argued that the indispensability of continuum models comes from their empirical adequacy despite their decoupling from the microscopic details of the modelled physical system. There is thus a commonly held misconception that temperature varying across a region of space or time can always be accurately represented as a continuous function. We discuss three inter-related cases of temperature modelling — in phase transitions, thermal boundary resistance and slip flows — and show that the continuum view is fallacious on (...) the ground that the microscopic details of a physical system are not necessarily decoupled from continuum models. We show how temperature discontinuities are present in both data (experiments and simulations) and phenomena (theory and models) and how discontinuum models of temperature variation may have greater empirical adequacy and explanatory power. The conclusions of our paper are: a) continuum idealisations are not indispensable to modelling physical phenomena and both continuous and discontinuous representations of phenomena work depending on the context; b) temperature is not necessarily a continuously defined function in our best scientific representations of the world; and c) that its continuity, where applicable, is a contingent matter. We also raise a question as to whether discontinuous representations should be considered truly de-idealised descriptions of physical phenomena. (shrink)

Cultural phylogenetics has made remarkable progress by relying on methods originally developed in biology. But biological and cultural evolution do not always proceed according to the same principles. So what, if anything, could justify the use of phylogenetic methods to reconstruct the evolutionary history of culture? In this paper, we describe models used to assess the reliability of inference methods and show how these models play an underappreciated role in addressing that question. The notion of reliability is of course central (...) to these models. As we explain, a common way of understanding reliability is in terms of low error rates. A careful look at case studies in cultural phylogenetics suggests that reliability models partly corroborate this understanding of reliability but also raises points of tension. We conclude by hinting at a few ways forward. (shrink)

This groundbreaking, open access volume analyses and compares data practices across several fields through the analysis of specific cases of data journeys. It brings together leading scholars in the philosophy, history and social studies of science to achieve two goals: tracking the travel of data across different spaces, times and domains of research practice; and documenting how such journeys affect the use of data as evidence and the knowledge being produced. The volume captures the opportunities, challenges and concerns involved in (...) making data move from the sites in which they are originally produced to sites where they can be integrated with other data, analysed and re-used for a variety of purposes. The in-depth study of data journeys provides the necessary ground to examine disciplinary, geographical and historical differences and similarities in data management, processing and interpretation, thus identifying the key conditions of possibility for the widespread data sharing associated with Big and Open Data. The chapters are ordered in sections that broadly correspond to different stages of the journeys of data, from their generation to the legitimisation of their use for specific purposes. Additionally, the preface to the volume provides a variety of alternative “roadmaps” aimed to serve the different interests and entry points of readers; and the introduction provides a substantive overview of what data journeys can teach about the methods and epistemology of research. (shrink)

This undergraduate textbook introduces some fundamental issues in philosophy of science for students of philosophy and science students. The book is divided into two parts. Part 1 deals with knowledge and values. Chap. 1 presents the classical conception of knowledge as initiated by the ancient Greeks and elaborated during the development of science, introducing the central concepts of truth, belief and justification. Aspects of the quest for objectivity are taken up in the following two chapters. Moral issues are broached in (...) Chap. 4, which discusses some aspects of the use and abuse of science, taking up the responsibilities of scientists in properly conducting their business and decision-makers in their concerns with the import of science for society. Part 2 contrasts the view of scientific progress as the rejecting of old hypotheses and theories and replacing them with new ones, represented by Karl Popper, with the conception of progress as accumulating knowledge, saving as much as possible from older theories, represented by Pierre Duhem. A concluding chapter defends the natural attitude of taking the theories of modern science to be literally true, i.e. realism, in the face of arguments drawn partly from the history of scientific progress in criticism of this stance. (shrink)

In this paper, I examine Azzouni's tracking requirement and its use as a normative constraint on theories about objects which we take as real. I focus on what he calls ‘thick epistemic access’ and argue that there is a logical–conceptual sense in which thick access to the real presupposes thin access to it. Then, I move on to advance an alternative—Sellarsian—way to ontic commitment and show that (a) it is better than Azzouni's, and (b) it can accommodate thick epistemic access (...) as a bonus. Finally, I try to defend the Quinean theoretical virtues against some of Azzouni's objections. Introduction Theoretical irrealism vs holistic realism On the epistemic authority of observation The myth of the levels Quinean virtues Conclusion. (shrink)

: Scientific observation is determined by the human sensory system, which generally relies on instruments that serve as mediators between the world and the senses. Instruments came in the shape of Heron's Dioptra, Levi Ben Gerson's Cross-staff, Egnatio Danti's Torqvetto Astronomico, Tycho's Quadrant, Galileo's Geometric Military Compass, or Kepler's Ecliptic Instrument. At the beginning of the seventeenth century, however, it was unclear how an instrument such as the telescope could be employed to acquire new information and expand knowledge about the (...) world. To exploit the telescope as a device for astronomical observations Galileo had to: 1. establish that telescopic images are not optical defects, imperfections in the eye of the observer, or illusions caused by lenses; 2. develop procedures for systematically handling errors that may occur during observation and measurement and methods of processing data. Galileo made it clear that in order to measure and interpret natural phenomena accurately, a suitable method and instrument would need to be developed. It is intriguing, therefore, to regard the Galilean telescope in this light and to discover the linkage established by Galileo among theory, method, and instrument—the telescope. Although the telescope was not invented through science, it is instructive to see how Galileo used optics to employ a theory-laden instrument for bridging the gulf between picture and scientific language, between drawing and reporting physical facts, and between merely sketching the world and actually describing it. (shrink)

According to a widely held view, scientific modelling consists in entertaining a set of model descriptions that specify a model. Rather than studying the phenomenon of interest directly, scientists investigate the phenomenon indirectly via a model in the hope of learning about some of the phenomenon’s features. I call this view the description-driven modelling (DDM) account. I argue that although an accurate description of much of scientific research, the DDM account is found wanting as regards the mechanistic modelling found in (...) many branches of biology. By analysing research practices in cancer immunology concerning the development of mechanistic models of the process of cancer metastasis, this paper presents and argues for a complementary account of scientific modelling, herein called the experimentation-driven modelling (EDM) account. In EDM, scientists investigate a set of experimental systems and then integrate the results obtained from experiments into a mechanistic model. While EDM shares some key features with DDM, the two are epistemically very different approaches to research. (shrink)

The sceptical positions philosophers have adopted with respect to neuroimaging data are based on detailed evaluations of subtraction, which is one of many data analysis techniques used with neuroimaging data. These positions are undermined when the epistemic implications of the use of a diversity of data analysis techniques are taken into account. I argue that different data analysis techniques reveal different patterns in the data. Through the use of multiple data analysis techniques, researchers can produce results that are locally robust. (...) Thus, the epistemology of neuroimaging must take into consideration the details of the different data analysis techniques that are used to evaluate neuroimaging data, and the specific theoretical aims those techniques are deployed towards. _1_ Introduction _2_ Scepticism about Neuroimaging _3_ Data Analysis and Evidence _4_ Deconvolution and Pattern Classification Analysis _4.1_ Deconvolution analysis _4.2_ Region of interest selection _4.3_ Pattern classification analysis _5_ The Strength of Multiple Analyses _6_ Conclusion. (shrink)

This essay attempts to provide additional motivation for the data/phenomena framework advocated in Bogen and Woodward, “Saving the Phenomena”.

This paper explores how data serve as evidence for phenomena. In contrast to standard philosophical models which invite us to think of evidential relationships as logical relationships, I argue that evidential relationships in the context of data-to-phenomena reasoning are empirical relationships that depend on holding the right sort of pattern of counterfactual dependence between the data and the conclusions investigators reach on the phenomena themselves.

This paper provides a restatement and defense of the data/ phenomena distinction introduced by Jim Bogen and me several decades ago (e.g., Bogen and Woodward, The Philosophical Review, 303–352, 1988). Additional motivation for the distinction is introduced, ideas surrounding the distinction are clarified, and an attempt is made to respond to several criticisms.

Going back at least to Duhem, there is a tradition of thinking that crucial experiments are impossible in science. I analyse Duhem's arguments and show that they are based on the excessively strong assumption that only deductive reasoning is permissible in experimental science. This opens the possibility that some principle of inductive inference could provide a sufficient reason for preferring one among a group of hypotheses on the basis of an appropriately controlled experiment. To be sure, there are analogues to (...) Duhem's problems that pertain to inductive inference. Using a famous experiment from the history of molecular biology as an example, I show that an experimentalist version of inference to the best explanation (IBE) does a better job in handling these problems than other accounts of scientific inference. Furthermore, I introduce a concept of experimental mechanism and show that it can guide inferences from data within an IBE-based framework for induction. 1. Introduction2. Duhem on the Logic of Crucial Experiments3. ‘The Most Beautiful Experiment in Biology’4. Why Not Simple Elimination?5. Severe Testing6. An Experimentalist Version of IBE 6.1. Physiological and experimental mechanisms6.2. Explaining the data6.3. IBE and the problem of untested auxiliaries6.4. IBE-turtles all the way down7. Van Fraassen's ‘Bad Lot’ Argument8. IBE and Bayesianism9. Conclusions. (shrink)

We do not all make choices, reason, interpret our experience, or respond to our environment in the same way. A recent surge of scientific interest has thrust these individual differences into the spotlight: researchers in cognitive psychology and neuroscience are now devoting increasing attention to cognitive variation. The philosophical dimensions of this research, however, have yet to be systematically explored. Here I make an initial foray by considering how cognitive variation is characterized. I present a central dilemma facing descriptions of (...) individual differences, discuss several distinctions used to categorize variation, and show that these distinctions require further elaboration. Finally, by canvassing several philosophical topics for which the characterization of cognitive variation may have significant implications, I argue that philosophers should take note of how and why our minds differ. (shrink)

Strong reciprocity has recently been subject to heated debate. In this debate, the “West camp” :231–262, 2011), which is critical of the case for SR, and the “Laland camp” :1512–1516, 2011, Biol Philos 28:719–745, 2013), which is sympathetic to the case of SR, seem to take diametrically opposed positions. The West camp criticizes advocates of SR for conflating proximate and ultimate causation. SR is said to be a proximate mechanism that is put forward by its advocates as an ultimate explanation (...) of human cooperation. The West camp thus accuses advocates of SR for not heeding Mayr’s original distinction between ultimate and proximate causation. The Laland camp praises advocates of SR for revising Mayr’s distinction. Advocates of SR are said to replace Mayr’s uni-directional view on the relation between ultimate and proximate causes by the bi-directional one of reciprocal causation. The paper argues that both the West camp and the Laland camp misrepresent what advocates of SR are up to. The West camp is right that SR is a proximate cause of human cooperation. But rather than putting forward SR as an ultimate explanation, as the West camp argues, advocates of SR believe that SR itself is in need of ultimate explanation. Advocates of SR tend to take gene-culture co-evolutionary theory as the correct meta-theoretical framework for advancing ultimate explanations of SR. Appearances notwithstanding, gene-culture coevolutionary theory does not imply Laland et al.’s notion of reciprocal causation. “Reciprocal causation” suggests that proximate and ultimate causes interact simultaneously, while advocates of SR assume that they interact sequentially. I end by arguing that the best way to understand the debate is by disambiguating Mayr’s ultimate-proximate distinction. I propose to reserve “ultimate” and “proximate” for different sorts of explanations, and to use other terms for distinguishing different kinds of causes and different parts of the total causal chain producing behavior. (shrink)

In a recent paper James Bogen and James Woodward denounce a set of views on confirmation that they collectively brand 'IRS'. The supporters of these views cast confirmation in terms of Inferential Relations between observational and theoretical Sentences. Against 1RS accounts of confirmation, Bogen and Woodward unveil two main objections: (a) inferential relations are not necessary to model confirmation relations since many data are neither in sentential form nor can they be put in such a form and (b) inferential relations (...) are not sufficient to model confirmation relations because the former cannot capture evidentially relevant factors about the detection processes and instruments that generate the data. In this paper I have a two-fold aim: (i) to show that Bogen and Woodward fail to provide compelling grounds for the rejection of IRS models and (ii) to highlight some of the models' neglected merits. (shrink)

Driven by an appreciation of the field’s early stage of development, I apply the concept of exploratory experimentation, originally put forward in the late 90s philosophy of biology, to current research in cognitive neuroscience. I concentrate on functional magnetic resonance imaging and how this wide-spread technique is used, from experimental design to data analysis. I claim that, although subject to certain significant modifications with respect to the concept’s original rendering, the exploratory character of neuroimaging experiments can be appreciated considering their (...) goals, centered on the stabilization of experimental systems for phenomenological description, and the relevance of their methodological facet. Although I do not claim that there is a specific kind of experiment that one can single out as definitely exploratory, exploration can be seen as a general trait imbuing fMRI-based experimentation. (shrink)

One important strategy for dealing with error in our methods is triangulation, or the use multiple methods to investigate the same object. Current accounts of triangulation assume that its primary function is to provide a confirmatory boost to hypotheses beyond what confirmation of each method alone could produce. Yet, researchers often use multiple methods to examine new constructs about which they are uncertain. For example, social psychologists use multiple indirect measures to provide convergent evidence about implicit attitudes, but how to (...) characterize implicit attitudes is an open question. To make sense of triangulation under uncertainty about constructs, I suggest two changes: first, triangulation can serve multiple epistemic functions, including some that are non-confirmatory, and second, researchers should assess the epistemic risk in claims about evidence and the acceptance/rejection of hypotheses. (shrink)

Bogen and Woodward argued the indirect connection between data and theory in terms of their conception of “phenomena.” I outline and elaborate on their presentation. To illuminate the connection with contemporary thinking in terms of models, I distinguish between phenomena tokens, representations of which can be identified with data models, and phenomena types that can be identified with relatively low-lying models or aspects of models in the model hierarchy. Throughout I stress the role of idealization in these considerations.

In this paper, Isuggest that placebo effects, as we know them today, should be understood as experimental phenomena, low-level regularities whose causal structure is grasped through particular experimental designs with little theoretical guidance. Focusing on placebo interventions with needles for pain reduction -one of the few placebo regularities that seems to arise in meta-analytical studies- I discuss the extent to which it is possible to decompose the different factors at play through more fine-grained randomized clinical trials. My sceptical argument is (...) twofold. On the one hand, I argue that experiments alone are not enough to standardize interventions, and that it is necessary to include theories. On the other hand, I argue that the social interactions that seem to be part of placebo effects are difficult, if not impossible, to blind. Therefore, the measurement biases arising from the participants’ reactivity to the experimental setup cannot be controlled for. Further decomposition of placebo effects requires a theoretical account of the existing experimental regularities that may guide further tests. (shrink)

The philosophy of measurement studies the conceptual, ontological, epistemic, and technological conditions that make measurement possible and reliable. A new wave of philosophical scholarship has emerged in the last decade that emphasizes the material and historical dimensions of measurement and the relationships between measurement and theoretical modeling. This essay surveys these developments and contrasts them with earlier work on the semantics of quantity terms and the representational character of measurement. The conclusions highlight four characteristics of the emerging research program in (...) philosophy of measurement: it is epistemological, coherentist, practice oriented, and model based. (shrink)

This paper draws attention to an increasingly common method of using computer simulations to establish evidential standards in physics. By simulating an actual detection procedure on a computer, physicists produce patterns of data (‘signatures’) that are expected to be observed if a sought-after phenomenon is present. Claims to detect the phenomenon are evaluated by comparing such simulated signatures with actual data. Here I provide a justification for this practice by showing how computer simulations establish the reliability of detection procedures. I (...) argue that this use of computer simulation undermines two fundamental tenets of the Bogen–Woodward account of evidential reasoning. Contrary to Bogen and Woodward’s view, computer-simulated signatures rely on ‘downward’ inferences from phenomena to data. Furthermore, these simulations establish the reliability of experimental setups without physically interacting with the apparatus. I illustrate my claims with a study of the recent detection of the superfluid-to-Mott-insulator phase transition in ultracold atomic gases. (shrink)

While scientific inquiry crucially relies on the extraction of patterns from data, we still have a far from perfect understanding of the metaphysics of patterns—and, in particular, of what makes a pattern real. In this paper we derive a criterion of real-patternhood from the notion of conditional Kolmogorov complexity. The resulting account belongs to the philosophical tradition, initiated by Dennett :27–51, 1991), that links real-patternhood to data compressibility, but is simpler and formally more perspicuous than other proposals previously defended in (...) the literature. It also successfully enforces a non-redundancy principle, suggested by Ladyman and Ross, that aims to exclude from real-patternhood those patterns that can be ignored without loss of information about the target dataset, and which their own account fails to enforce. (shrink)

The Morris water maze has been put forward in the philosophy of neuroscience as an example of an experimental arrangement that may be used to delineate the cognitive faculty of spatial memory (e.g., Craver and Darden, Theory and method in the neurosciences, University of Pittsburgh Press, Pittsburgh, 2001; Craver, Explaining the brain: Mechanisms and the mosaic unity of neuroscience, Oxford University Press, Oxford, 2007). However, in the experimental and review literature on the water maze throughout the history of its use, (...) we encounter numerous responses to the question of “what” phenomenon it circumscribes ranging from cognitive functions (e.g., “spatial learning”, “spatial navigation”), to representational changes (e.g., “cognitive map formation”) to terms that appear to refer exclusively to observable changes in behavior (e.g., “water maze performance”). To date philosophical analyses of the water maze have not been directed at sorting out what phenomenon the device delineates nor the sources of the different answers to the question of what. I undertake both of these tasks in this paper. I begin with an analysis of Morris’s first published research study using the water maze and demonstrate that he emerged from it with an experimental learning paradigm that at best circumscribed a discrete set of observable changes in behavior. However, it delineated neither a discrete set of representational changes nor a discrete cognitive function. I cite this in combination with a reductionist-oriented research agenda in cellular and molecular neurobiology dating back to the 1980s as two sources of the lack of consistency across the history of the experimental and review literature as to what is under study in the water maze. (shrink)

Influential classical and recent approaches to explicate confirmation, explanation, or explanatory power define these relations or degrees between hypotheses and evidence. This holds for both deductive and Bayesian approaches. However, this neglects the role of data, which for many everyday and scientific examples cannot simply be classified as evidence. I present arguments to sharply distinguish data from evidence in Bayesian approaches. Taking into account this distinction, we can rewrite Schupbach and Sprenger’s measure of explanatory power and show the strengths of (...) this adaptation by applying it to the example of the detection of gravitational waves in physics. (shrink)

I describe two traditions of philosophical accounts of evidence: one characterizes the notion in terms of signs of success, the other characterizes the notion in terms of conditions of success. The best examples of the former rely on the probability calculus, and have the virtues of generality and theoretical simplicity. The best examples of the latter describe the features of evidence which scientists appeal to in practice, which include general features of methods, such as quality and relevance, and general features (...) of evidence, such as patterns in data, concordance with other evidence, and believability of the evidence. Two infamous episodes from biomedical research help to illustrate these features. Philosophical characterization of these latter features—conditions of success—has the virtue of potential relevance to, and descriptive accuracy of, practices of experimental scientists. (shrink)

We show how more general knowledge can be built in information security, by the building of knowledge of mechanism clusters, some of which are multifield. By doing this, we address in a novel way the longstanding philosophical problem of how, if at all, we come to have knowledge that is in any way general, when we seem to be confined to particular experiences. We also address the issue of building knowledge of mechanisms by studying an area that is new to (...) the mechanisms literature: the methods of what we shall call mechanism discovery in information security. This domain offers a fascinating novel constellation of challenges for building more general knowledge. Specifically, the building of stable communicable mechanistic knowledge is impeded by the inherent changeability of software, which is deployed by malicious actors constantly changing how their software attacks, and also by an ineliminable secrecy concerning the details of attacks not just by attackers, but also by information security defenders as they protect their methods from both attackers and commercial competitors. We draw out ideas from the work of the mechanists Darden, Craver, and Glennan to yield an approach to how general knowledge of mechanisms can be painstakingly built. We then use three related examples of active research problems from information security to develop philosophical thinking about building general knowledge using mechanisms, and also apply this to develop insights for information security. We show that further study would be instructive both for practitioners and for philosophers. (shrink)

We show how more general knowledge can be built in information security, by the building of knowledge of mechanism clusters, some of which are multifield. By doing this, we address in a novel way the longstanding philosophical problem of how, if at all, we come to have knowledge that is in any way general, when we seem to be confined to particular experiences. We also address the issue of building knowledge of mechanisms by studying an area that is new to (...) the mechanisms literature: the methods of what we shall call mechanism discovery in information security. This domain offers a fascinating novel constellation of challenges for building more general knowledge. Specifically, the building of stable communicable mechanistic knowledge is impeded by the inherent changeability of software, which is deployed by malicious actors constantly changing how their software attacks, and also by an ineliminable secrecy concerning the details of attacks not just by attackers, but also by information security defenders as they protect their methods from both attackers and commercial competitors. We draw out ideas from the work of the mechanists Darden, Craver, and Glennan to yield an approach to how general knowledge of mechanisms can be painstakingly built. We then use three related examples of active research problems from information security to develop philosophical thinking about building general knowledge using mechanisms, and also apply this to develop insights for information security. We show that further study would be instructive both for practitioners and for philosophers. (shrink)

Diagrams have distinctive characteristics that make them an effective medium for communicating research findings, but they are even more impressive as tools for scientific reasoning. Focusing on circadian rhythm research in biology to explore these roles, we examine diagrammatic formats that have been devised to identify and illuminate circadian phenomena and to develop and modify mechanistic explanations of these phenomena.

In many fields of biology, both the phenomena to be explained and the mechanisms proposed to explain them are commonly presented in diagrams. Our interest is in how scientists construct such diagrams. Researchers begin with evidence, typically developed experimentally and presented in data graphs. To arrive at a robust diagram of the phenomenon or the mechanism, they must integrate a variety of data to construct a single, coherent representation. This process often begins as the researchers create a first sketch, and (...) it continues over an extended period as they revise the sketch until they arrive at a diagram they find acceptable. We illustrate this process by examining the sketches developed in the course of two research projects directed at understanding the generation of circadian rhythms in cyanobacteria. One identified a new aspect of the phenomenon itself, whereas the other aimed to develop a new mechanistic account. In both cases, the research resulted in a paper in which the conclusion was presented in a diagram that the authors deemed adequate to convey it. These diagrams violate some of the normative “cognitive design principles” advanced by cognitive scientists as constraints on successful visual communication. We suggest that scientists’ sketching is instead governed by norms of success that are broadly explanatory: conveying the phenomenon or mechanism. (shrink)

Recent attempts to reconcile the ontic and epistemic approaches to explanation propose that our best explanations simply fulfill epistemic and ontic norms simultaneously. I aim to upset this armistice. Epistemic norms of attaining general and systematic explanations are, I argue, autonomous of ontic norms: they cannot be fulfilled simultaneously or in simple conjunction with ontic norms, and plausibly have priority over them. One result is that central arguments put forth by ontic theorists against epistemic theorists are revealed as not only (...) question-begging, but ultimately self-defeating. Another result is that a more nuanced reconciliation of the epistemic and ontic views is required: we should regard good explanatory practice as a dynamic process with distinct phases of epistemic and ontic success. (shrink)

This article examines a metaphilosophical issue, namely existing disagreements in philosophy of science about the significance of using multiple means of determination in scientific practice. We argue that this disagreement can, in part, be resolved by separating different questions that can be asked about the use of multiple means of determination, including the following: what can be concluded from the convergence of data or the convergence of claims about phenomena? Are the conclusions drawn from the convergence of data and of (...) statements about phenomena of special importance to the debate about realism and antirealism? Do inferences based on multiple means of determination have stronger epistemic force than inferences that are secured in other ways? Is the epistemic goal of deploying multiple means of determination well entrenched within the scientific community? Most of these questions can be discussed both in a formal and in an empirical perspective. If the differences in perspective are taken into account, some disagreements can be easily resolved. In part, however, the disagreements reflect historiographical challenges that are very difficult, if not impossible to meet. (shrink)

The thesis of theory-ladenness of observations, in its various guises, is widely considered as either ill-conceived or harmless to the rationality of science. The latter view rests partly on the work of the proponents of New Experimentalism who have argued, among other things, that experimental practices are efficient in guarding against any epistemological threat posed by theory-ladenness. In this paper I show that one can generate a thesis of theory-ladenness for experimental practices from an influential New Experimentalist account. The notion (...) I introduce for this purpose is the concept of ‘theory-driven data reliability judgments’, according to which theories which are sought to be tested with a particular set of data guide reliability judgments about those very same data. I provide various prominent historical examples to show that TDRs are used by scientists to resolve data conflicts. I argue that the rationality of the practices which employ TDRs can be saved if the independent support of the theories driving TDRs is construed in a particular way. (shrink)

In this paper I inquire into Bogen and Woodward’s data/phenomena distinction, which in a similar way to Cartwright’s construal of the model of superconductivity —although in a different domain—argues for a ‘bottom-up’ construction of phenomena from data without the involvement of theory. I criticise Bogen and Woodward’s account by analysing their melting point of lead example in depth, which is usually cited in the literature to illustrate the data/phenomenon distinction. Yet, the main focus of this paper lies on Matthias Kaiser’s (...) case study of the plate tectonic revolution, the most extensive case study that has been put forth to support the bottom-up construction of phenomena. On the basis of new historical evidence, which has been overlooked not only by Kaiser but also by the entire historical literature on the plate tectonic revolution, I demonstrate that phenomena are not constructed from the bottom-up but rather, admittedly counter-intuitively, from the top-down.Keywords: Data; Phenomena; Bottom-up; Theory-ladenness; Plate tectonic revolution. (shrink)

In this paper, I discuss the discovery of the DNA structure by Francis Crick and James Watson, which has provoked a large historical literature but has yet not found entry into philosophical debates. I want to redress this imbalance. In contrast to the available historical literature, a strong emphasis will be placed upon analysing the roles played by theory, model, and evidence and the relationship between them. In particular, I am going to discuss not only Crick and Watson's well-known model (...) and Franklin's x-ray diffraction pictures (the evidence) but also the less well known theory of helical diffraction, which was absolutely crucial to Crick and Watson's discovery. The insights into this groundbreaking historical episode will have consequences for the ‘new’ received view of scientific models and their function and relationship to theory and world. The received view, dominated by works by Cartwright and Morgan and Morrison ([1999]), rather than trying to put forth a ‘theory of models’, is interested in questions to do with (i) the function of models in scientific practice and (ii) the construction of models. In regard to (i), the received view locates the model (as an idealized, simplified version of the real system under investigation) between theory and the world and sees the model as allowing the application of the former to the latter. As to (ii) Cartwright has argued for a phenomenologically driven view and Morgan and Morrison ([1999]) for the ‘autonomy’ of models in the construction process: models are determined neither by theory nor by the world. The present case study of the discovery of the DNA structure strongly challenges both (i) and (ii). In contrast to claim (i) of the received view, it was not Crick and Watson's model but rather the helical diffraction theory which served a mediating purpose between the model and the x-ray diffraction pictures. In particular, Cartwright's take on (ii) is refuted by a comparison of Franklin's bottom-up approach with Crick and Watson's top-down approach in constructing the model. The former led to difficulties, which only a strong confidence in the structure incorporated in the model could circumvent. How to Get to the Structure 1.1 X-ray diffraction and its synthesis 1.2 Model building and Pauling's panache 1.3 The structure of proteins 1.3.1 A failed inference to the best explanation 1.3.2 The misleading 5.1 Å spot in proteins and how to get rid of it 1.3.3 Derived predictions from Pauling's alpha-helix of protein molecules The CCV Theory of Helical X-Ray Diffraction 2.1 The role of the CCV theory in the discovery of the DNA structure Killing the Helix 3.1 Appreciating all evidence—in vain Conclusion Epilogue: Chargaff's Ratios CiteULike Connotea Del.icio.us What's this? (shrink)

Some twenty years ago, Bogen and Woodward challenged one of the fundamental assumptions of the received view, namely the theory-observation dichotomy and argued for the introduction of the further category of scientific phenomena. The latter, Bogen and Woodward stressed, are usually unobservable and inferred from what is indeed observable, namely scientific data. Crucially, Bogen and Woodward claimed that theories predict and explain phenomena, but not data. But then, of course, the thesis of theory-ladenness, which has it that our observations are (...) influenced by the theories we hold, cannot apply. On the basis of two case studies, I want to show that this consequence of Bogen and Woodward’s account is rather unrealistic. More importantly, I also object against Bogen and Woodward’s view that the reliability of data, which constitutes the precondition for data-to-phenomena inferences, can be secured without the theory one seeks to test. The case studies I revisit have figured heavily in the publications of Bogen and Woodward and others: the discovery of weak neutral currents and the discovery of the zebra pattern of magnetic anomalies. I show that, in the latter case, data can be ignored if they appear to be irrelevant from a particular theoretical perspective (TLI) and that, in the former case, the tested theory can be critical for the assessment of the reliability of the data (TLA). I argue that both TLI and TLA are much stronger senses of theory-ladenness than the classical thesis and that neither TLI nor TLA can be accommodated within Bogen and Woodward’s account. (shrink)

Computational explanations focus on information processing required in specific cognitive capacities, such as perception, reasoning or decision-making. These explanations specify the nature of the information processing task, what information needs to be represented, and why it should be operated on in a particular manner. In this article, the focus is on three questions concerning the nature of computational explanations: What type of explanations they are, in what sense computational explanations are explanatory and to what extent they involve a special, “independent” (...) or “autonomous” level of explanation. In this paper, we defend the view computational explanations are genuine explanations, which track non-causal/formal dependencies. Specifically, we argue that they do not provide mere sketches for explanation, in contrast to what for example Piccinini and Craver :283–311, 2011) suggest. This view of computational explanations implies some degree of “autonomy” for the computational level. However, as we will demonstrate that does not make this view “computationally chauvinistic” in a way that Piccinini or Kaplan :339–373, 2011) have charged it to be. (shrink)

Philosophers like Duhem and Cartwright have argued that there is a tension between laws' abilities to explain and to represent. Abstract laws exemplify the first quality, phenomenological laws the second. This view has both metaphysical and methodological aspects: the world is too complex to be represented by simple theories; supplementing simple theories to make them represent reality blocks their confirmation. We argue that both aspects are incompatible with recent developments in nonlinear dynamics. Confirmation procedures and modelling strategies in nonlinear dynamics (...) show that there are simple, abstract theories that can be confirmed without encountering the problems pointed to by Cartwright. (shrink)

This paper defends the naïve thesis that the method of experiment has per se an epistemic superiority over the method of computer simulation, a view that has been rejected by some philosophers writing about simulation, and whose grounds have been hard to pin down by its defenders. I further argue that this superiority does not come from the experiment’s object being materially similar to the target in the world that the investigator is trying to learn about, as both sides of (...) dispute over the epistemic superiority thesis have assumed. The superiority depends on features of the question and on a property of natural kinds that has been mistaken for material similarity. Seeing this requires holding other things equal in the comparison of the two methods, thereby exposing that, under the conditions that will be specified, the simulation is necessarily epistemically one step behind the corresponding experiment. Practical constraints like feasibility and morality mean that scientists do not often face an other-things- equal comparison when they choose between experiment and simulation. Nevertheless, I argue, awareness of this superiority and of the general distinction between experiment and simulation is important for maintaining motivation to seek answers to new questions. (shrink)

Contrary to the assumptions of empiricist philosophies of science, the theory-laden character of data will not imply the inherent failure (subjectivity, circularity, or rationalization) of instruments to expose nature's secrets. The success of instruments is credited to scientists' capacity to create artificial technological analogs to familiar physical systems. The design of absorption spectrometers illustrates the point: Progress in designing many modern instruments is generated by analogically projecting theoretical insights from known physical systems to unknown terrain. An experimental realism is defended.