Results for 'Molecular Structure'

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  1. The Problem of Molecular Structure Just Is The Measurement Problem.Alexander Franklin & Vanessa Angela Seifert - forthcoming - The British Journal for the Philosophy of Science.
    Whether or not quantum physics can account for molecular structure is a matter of considerable controversy. Three of the problems raised in this regard are the problems of molecular structure. We argue that these problems are just special cases of the measurement problem of quantum mechanics: insofar as the measurement problem is solved, the problems of molecular structure are resolved as well. In addition, we explore one consequence of our argument: that claims about the (...)
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  2. The strong emergence of molecular structure.Vanessa A. Seifert - 2020 - European Journal for Philosophy of Science 10 (3):1-25.
    One of the most plausible and widely discussed examples of strong emergence is molecular structure. The only detailed account of it, which has been very influential, is due to Robin Hendry and is formulated in terms of downward causation. This paper explains Hendry’s account of the strong emergence of molecular structure and argues that it is coherent only if one assumes a diachronic reflexive notion of downward causation. However, in the context of this notion of downward (...)
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  3. Smelling Molecular Structure.Benjamin D. Young - 2019 - In Steven Gouveia, Manuel Curado & Dena Shottenkirk (eds.), Perception, Cognition and Aesthetics. New York: Routledge Studies in Contemporary Philosophy. pp. 64-84.
    There is consensus within the chemosciences that olfactory perception is of the molecular structure of chemical compounds, yet within philosophical theories of smell there is little agreement about the nature of smell. The paper critically assesses the current state of debate regarding smells within philosophy in the hopes of setting it upon firm scientific footing. The theories to be covered are: Naïve Realism, Hedonic Theories, Process Theory, Odor Theories, and non-Objectivist Theories. The aforementioned theories will be evaluated based (...)
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  4.  89
    A Commentary on Robin Hendry’s Views on Molecular Structure, Emergence and Chemical Bonding.Eric Scerri - 2023 - In João L. Cordovil, Gil Santos & Davide Vecchi (eds.), New Mechanism Explanation, Emergence and Reduction. Springer. pp. 161 - 177.
    In this article I examine several related views expressed by Robin Hendry concerning molecular structure, emergence and chemical bonding. There is a long-standing problem in the philosophy of chemistry arising from the fact that molecular structure cannot be strictly derived from quantum mechanics. Two or more compounds which share a molecular formula, but which differ with respect to their structures, have identical Hamiltonian operators within the quantum mechanical formalism. As a consequence, the properties of all (...)
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  5. Categorical Abstractions of Molecular Structures of Biological Objects: A Case Study of Nucleic Acids.Jinyeong Gim - 2023 - Global Philosophy 33 (5):No.43.
    The type-level abstraction is a formal way to represent molecular structures in biological practice. Graphical representations of molecular structures of biological objects are also used to identify functional processes of things. This paper will reveal that category theory is a formal mathematical language not only to visualize molecular structures of biological objects as type-level abstraction formally but also to understand how to infer biological functions from the molecular structures of biological objects. Category theory is a toolkit (...)
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  6. The molecular vista: current perspectives on molecules and life in the twentieth century.Mathias Grote, Lisa Onaga, Angela N. H. Creager, Soraya de Chadarevian, Daniel Liu, Gina Surita & Sarah E. Tracy - 2021 - History and Philosophy of the Life Sciences 43 (1):1-18.
    This essay considers how scholarly approaches to the development of molecular biology have too often narrowed the historical aperture to genes, overlooking the ways in which other objects and processes contributed to the molecularization of life. From structural and dynamic studies of biomolecules to cellular membranes and organelles to metabolism and nutrition, new work by historians, philosophers, and STS scholars of the life sciences has revitalized older issues, such as the relationship of life to matter, or of physicochemical inquiries (...)
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  7. Heads and Tails: Molecular Imagination and the Lipid Bilayer, 1917–1941.Daniel Liu - 2018 - In Karl Matlin, Jane Maienschein & Manfred Laubichler (eds.), Visions of Cell Biology: Reflections Inspired by Cowdry's General Cytology. University of Chicago Press. pp. 209-245.
    Today, the lipid bilayer structure is nearly ubiquitous, taken for granted in even the most rudimentary introductions to cell biology. Yet the image of the lipid bilayer, built out of lipids with heads and tails, went from having obscure origins deep in colloid chemical theory in 1924 to being “obvious to any competent physical chemist” by 1935. This chapter examines how this schematic, strictly heuristic explanation of the idea of molecular orientation was developed within colloid physical chemistry, and (...)
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  8. On Being the Right Size, Revisited: The Problem with Engineering Metaphors in Molecular Biology.Daniel J. Nicholson - 2020 - In Sune Holm & Maria Serban (eds.), Philosophical Perspectives on the Engineering Approach in Biology: Living Machines? New York: Routledge. pp. 40-68.
    In 1926, Haldane published an essay titled 'On Being the Right Size' in which he argued that the structure, function, and behavior of an organism are strongly conditioned by the physical forces that exert the greatest impact at the scale at which it exists. This chapter puts Haldane’s insight to work in the context of contemporary cell and molecular biology. Owing to their minuscule size, cells and molecules are subject to very different forces than macroscopic organisms. In a (...)
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  9. The Genome as the Biological Unconscious – and the Unconscious as the Psychic 'Genome': A Psychoanalytical Rereading of Molecular Genetics.Hub Zwart - 2013 - Cosmos and History 9 (2):198-222.
    1900 was a remarkable year for science. Several ground-breaking events took place, in physics, biology and psychology. Planck introduced the quantum concept, the work of Mendel was rediscovered, and Sigmund Freud published The Interpretation of Dreams . These events heralded the emergence of completely new areas of inquiry, all of which greatly affected the intellectual landscape of the 20 th century, namely quantum physics, genetics and psychoanalysis. What do these developments have in common? Can we discern a family likeness, a (...)
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  10. Back to the future: Aristotle and molecular biology.Armando Aranda Anzaldo - 2007 - Ludus Vitalis 15 (28):195-198.
    The Aristotelian axiom that function follows form was beautifully instantiated in molecular biology by the discovery of DNA’s structure that immediately suggested how DNA might work as depository and vehicle for genetic information. However, later on molecular biology became infatuated with the gene that became the center of the universe. This gene-centered viewpoint is an obstacle for the emerging field of evo-devo aiming at finding the causal connections between evolution and biological development. Here it is argued that (...)
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  11. SNARE proteins as molecular masters of interneuronal communication.Danko D. Georgiev & James F. Glazebrook - 2010 - Biomedical Reviews 21:17-23.
    In the beginning of the 20th century the groundbreaking work of Ramon y Cajal firmly established the neuron doctrine, according to which neurons are the basic structural and functional units of the nervous system. Von Weldeyer coined the term “neuron” in 1891, but the huge leap forward in neuroscience was due to Cajal’s meticulous microscopic observations of brain sections stained with an improved version of Golgi’s la reazione nera (black reaction). The latter improvement of Golgi’s technique made it possible to (...)
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  12. In Defense of the Agent and Patient Distinction: The Case from Molecular Biology and Chemistry.Davis Kuykendall - forthcoming - British Journal for the Philosophy of Science.
    In this paper, I defend the agent/patient distinction against critics who argue that causal interactions are symmetrical. Specifically, I argue that there is a widespread type of causal interaction between distinct entities, resulting in a type of ontological asymmetry that provides principled grounds for distinguishing agents from patients. The type of interaction where the asymmetry is found is when one of the entities undergoes a change in kind, structure, powers, or intrinsic properties as a result of the interaction while (...)
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  13. A neglected aspect of the puzzle of chemical structure: how history helps.Joseph E. Earley - 2012 - Foundations of Chemistry 14 (3):235-243.
    Intra-molecular connectivity (that is, chemical structure) does not emerge from computations based on fundamental quantum-mechanical principles. In order to compute molecular electronic energies (of C 3 H 4 hydrocarbons, for instance) quantum chemists must insert intra-molecular connectivity “by hand.” Some take this as an indication that chemistry cannot be reduced to physics: others consider it as evidence that quantum chemistry needs new logical foundations. Such discussions are generally synchronic rather than diachronic —that is, they neglect ‘historical’ (...)
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  14. Structure and biological function of ribonucleic acid from Tobacco Mosaic Virus.Alfred Gierer - 1957 - Nature 179:1297-1299.
    Within the sedimentation diagram of infective RNA preparations isolated from Tobacco Mosaic Virus, undegraded molecules form a sharp peak with a molecular weight corresponding to the total RNA content of the virus particle. Degradation kinetics by ribonuclease is of the linear, single-target type, indicating that the RNA is single-stranded. The intact RNA of a virus particle thus forms one big single-stranded molecule. Quantitative evaluation of the effect degradation by RNA-ase on the infectivity of the RNA shows that the integrity (...)
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  15. Strategies of Explanatory Abstraction in Molecular Systems Biology.Nicholaos Jones - 2018 - Philosophy of Science 85 (5):955-968.
    I consider three explanatory strategies from recent systems biology that are driven by mathematics as much as mechanistic detail. Analysis of differential equations drives the first strategy; topological analysis of network motifs drives the second; mathematical theorems from control engineering drive the third. I also distinguish three abstraction types: aggregations, which simplify by condensing information; generalizations, which simplify by generalizing information; and structurations, which simplify by contextualizing information. Using a common explanandum as reference point—namely, the robust perfect adaptation of chemotaxis (...)
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  16. Life and Mind: The Common Tetradic Structure of Organism and Consciousness – a Phenomenological Approach.Christoph Hueck - 2024 - Dialectical Systems: A Forum in Biology, Ecology, and Cognitive Science.
    The question of the holistic structure of an organism is a recurring theme in the philosophy of biology and has been increasingly discussed again in recent years. Organisms have recently been described as complex systems that autonomously create, maintain and reproduce themselves while constantly interacting with their environment. Key focal points include their autopoiesis, autonomy, agency and teleological structure. This perspective marks a significant advancement from the 20th-century viewpoint, which predominantly saw organisms as genetically programmed, randomly generated and (...)
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  17. Scientific revolutions, specialization and the discovery of the structure of DNA: toward a new picture of the development of the sciences.Politi Vincenzo - 2018 - Synthese 195 (5):2267-2293.
    In his late years, Thomas Kuhn became interested in the process of scientific specialization, which does not seem to possess the destructive element that is characteristic of scientific revolutions. It therefore makes sense to investigate whether and how Kuhn’s insights about specialization are consistent with, and actually fit, his model of scientific progress through revolutions. In this paper, I argue that the transition toward a new specialty corresponds to a revolutionary change for the group of scientists involved in such a (...)
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  18. On the Limits of Causal Modeling: Spatially-Structurally Complex Biological Phenomena.Marie I. Kaiser - 2016 - Philosophy of Science 83 (5):921-933.
    This paper examines the adequacy of causal graph theory as a tool for modeling biological phenomena and formalizing biological explanations. I point out that the causal graph approach reaches it limits when it comes to modeling biological phenomena that involve complex spatial and structural relations. Using a case study from molecular biology, DNA-binding and -recognition of proteins, I argue that causal graph models fail to adequately represent and explain causal phenomena in this field. The inadequacy of these models is (...)
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  19. What Is Life: An Informational Model of the Living Structures.Florin Gaiseanu - 2020 - Biochemistry and Molecular Biology 5 (2):18-28.
    Schröedinger’s question “what is life?” was a real challenge for the scientific community and this still remains as an opened question, because in spite of the important advances in various scientific branches like philosophy, biology, chemistry and physics,, each of them assesses life from its particular point of view to explain the life’ characteristic features, so not a coherent and well structured general model of life was reported. In this paper life is approached from informational perspective, starting from earlier Draganeacu's (...)
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  20. Perceiving Smellscapes.Benjamin D. Young - 2020 - Pacific Philosophical Quarterly 101 (2):203-223.
    We perceive smells as perduring complex entities within a distal array that might be conceived of as smellscapes. However, the philosophical orthodoxy of Odor Theories has been to deny that smells are perceived as having a distal location. Recent challenges have been mounted to Odor Theories’ veracity in handling the timescale of olfactory perception, how it individuates odors as a distal entities, and their claim that olfactory perception is not spatial. The paper does not aim to dispute these criticisms. Rather, (...)
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  21. Are dispositions reducible to categorical properties?James Franklin - 1986 - Philosophical Quarterly 36 (142):62-64.
    Dispostions, such as solubility, cannot be reduced to categorical properties, such as molecular structure, without some element of dipositionaity remaining. Democritus did not reduce all properties to the geometry of atoms - he had to retain the rigidity of the atoms, that is, their disposition not to change shape when a force is applied. So dispositions-not-to, like rigidity, cannot be eliminated. Neither can dispositions-to, like solubility.
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  22.  67
    Emergence in Complex Physiological Processes: The Case of Vitamin B12 Functions in Erythropoiesis.Francesca Bellazzi & Marta Bertolaso - 2024 - Systems 12.
    In this paper, we will explore the relation between molecular structure and functions displayed by biochemical molecules in complex physiological processes by using tools from the philosophy of science and the philosophy of scientific practice. We will argue that biochemical functions are weakly emergent from molecular structure by using an account of weak. In order to explore this thesis, we will consider the role of vitamin B12 in contributing to the process of erythropoiesis. The structure (...)
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  23. Smelling Odors and Tasting Flavors: distinguishing orthonasal smell from retronasal olfaction.Benjamin D. Young - 2023 - In Aleksandra Mroczko-Wrasowicz & Rick Grush (eds.), Sensory Individuals: Unimodal and Multimodal Perspectives. Oxford: Oxford University Press.
    It is arguably the case that olfactory system contains two senses that share the same type of stimuli, sensory transduction mechanism, and processing centers. Yet, orthonasal and retronasal olfaction differ in their types of perceptible objects as individuated by their sensory qualities. What will be explored in this paper is how the account of orthonasal smell developed in the Molecular Structure Theory of smell can be expanded for retronasal olfaction (Young, 2016, 2019a-b, 2020). By considering the object of (...)
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  24. Ontology as the core discipline of biomedical informatics: Legacies of the past and recommendations for the future direction of research.Barry Smith & Werner Ceusters - 2007 - In Gordana Dodig Crnkovic & Susan Stuart (eds.), Computation, Information, Cognition: The Nexus and the Liminal. Cambridge Scholars Publishing. pp. 104-122.
    The automatic integration of rapidly expanding information resources in the life sciences is one of the most challenging goals facing biomedical research today. Controlled vocabularies, terminologies, and coding systems play an important role in realizing this goal, by making it possible to draw together information from heterogeneous sources – for example pertaining to genes and proteins, drugs and diseases – secure in the knowledge that the same terms will also represent the same entities on all occasions of use. In the (...)
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  25. Counterpossibles in Scientific Practice - Three Case Studies in support of Worldly Hyperintensionality.Giorgio Lenta - 2021 - Dissertation, University of Turin
    Hyperintensionality – the failure of substitutivity salva veritate of intensionally equivalent expressions – is one of the most debated topics in recent philosophy of language. Being a phenomenon that affects a wide variety of different sentential contexts, a question concerning its source arises: is hyperintensionality something that can originate from actual features of the world, or it is simply some kind of representational phenomenon, which entirely depends on our conceptual faculties and preferred semantics? After a brief general introduction to the (...)
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  26. Ontologies for the life sciences.Steffen Schulze-Kremer & Barry Smith - 2005 - In Schulze-Kremer Steffen & Smith Barry (eds.), Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, vol. 4. Wiley.
    Where humans can manipulate and integrate the information they receive in subtle and ever-changing ways from context to context, computers need structured and context-free background information of a sort which ontologies can help to provide. A domain ontology captures the stable, highly general and commonly accepted core knowledge for an application domain. The domain at issue here is that of the life sciences, in particular molecular biology and bioinformatics. Contemporary life science research includes components drawn from physics, chemistry, mathematics, (...)
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  27.  65
    Biochemical Kinds and the Unity of Science.Francesca Bellazzi - 2023 - Dissertation, University of Bristol
    The present thesis explores some metaphysical issues concerning biochemical kinds and the relations between chemical and biological properties and phenomena. The main result of this thesis is that there is something sui generis about biochemical kinds. This result is motivated by two theoretical steps. The first is characterising biochemical functions as weakly emergent from the chemical structure [Chapter 3, Chapter 6]. The second is via an account for which biochemical kinds are natural categories [Chapter 4, Chapter 7]. The thesis (...)
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  28. Dispositional Properties in Evo-Devo.Christopher J. Austin & Laura Nuño de la Rosa - 2018 - In Laura Nuño de la Rosa & G. Müller (eds.), Evolutionary Developmental Biology. Springer.
    In identifying intrinsic molecular chance and extrinsic adaptive pressures as the only causally relevant factors in the process of evolution, the theoretical perspective of the Modern Synthesis had a major impact on the perceived tenability of an ontology of dispositional properties. However, since the late 1970s, an increasing number of evolutionary biologists have challenged the descriptive and explanatory adequacy of this “chance alone, extrinsic only” understanding of evolutionary change. Because morphological studies of homology, convergence, and teratology have revealed a (...)
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  29. On Cellular Automata Representation of Submicroscopic Physics: From Static Space to Zuse’s Calculating Space Hypothesis.Victor Christianto, Volodymyr Krasnoholovets & Florentin Smarandache - manuscript
    In some recent papers (G. ‘t Hooft and others), it has been argued that quantum mechanics can arise from classical cellular automata. Nonetheless, G. Shpenkov has proved that the classical wave equation makes it possible to derive a periodic table of elements, which is very close to Mendeleyev’s one, and describe also other phenomena related to the structure of molecules. Hence the classical wave equation complements Schrödinger’s equation, which implies the appearance of a cellular automaton molecular model starting (...)
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  30. Brains Emerging: On Modularity and Self-organisation of Neural Development In Vivo and In Vitro.Paul Gottlob Layer - 2019 - In Lars H. Wegner & Ulrich Lüttge (eds.), Emergence and Modularity in Life Sciences. Springer Verlag. pp. 145-169.
    Molecular developmental biology has expanded our conceptions of gene actions, underpinning that embryonic development is not only governed by a set of specific genes, but as much by space–time conditions of its developing modules. Typically, formation of cellular spheres, their transformation into planar epithelia, followed by tube formations and laminations are modular steps leading to the development of nervous tissues. Thereby, actions of organising centres, morphogenetic movements, inductive events between epithelia, tissue polarity reversal, widening of epithelia, and all these (...)
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  31. The Quest for System-Theoretical Medicine in the COVID-19 Era.Felix Tretter, Olaf Wolkenhauer, Michael Meyer-Hermann, Johannes W. Dietrich, Sara Green, James Marcum & Wolfram Weckwerth - 2021 - Frontiers in Medicine 8:640974.
    Precision medicine and molecular systems medicine (MSM) are highly utilized and successful approaches to improve understanding, diagnosis, and treatment of many diseases from bench-to-bedside. Especially in the COVID-19 pandemic, molecular techniques and biotechnological innovation have proven to be of utmost importance for rapid developments in disease diagnostics and treatment, including DNA and RNA sequencing technology, treatment with drugs and natural products and vaccine development. The COVID-19 crisis, however, has also demonstrated the need for systemic thinking and transdisciplinarity and (...)
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  32. Reflections on a theory of organisms: holism in biology.Walter M. Elsasser - 1987 - Baltimore, Md: Published for the Johns Hopkins Dept. of Earth and Planetary Sciences by the Johns Hopkins University Press.
    Are living organisms--as Descartes argued--just machines? Or is the nature of life such that it can never be fully explained by mechanistic models? In this thought-provoking and controversial book, eminent geophysicist Walter M. Elsasser argues that the behavior of living organisms cannot be reduced to physico-chemical causality. Suggesting that molecular biology today is at the same point as Newtonian physics on the eve of the quantum revolution, Elsasser lays the foundation for a theoretical biology that points the way toward (...)
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  33. A New Foundation for Physics.Jim Bourassa & David Thomson - 2006 - Infinite Energy Magazine (69):34.
    Modern physics describes the mechanics of the Universe. We have discovered a new foundation for physics, which explains the components of the Universe with precision and depth. We quantify the existence of Aether, subatomic particles, and the force laws. Some aspects of the theory derive from the Standard Model, but much is unique. A key discovery from this new foundation is a mathematically correct Unified Force Theory. Other fundamental discoveries follow, including the origin of the fine structure constant and (...)
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  34. A conceptual taxonomy of adaptation in evolutionary biology.Emanuele Serrelli & Francesca Micol Rossi - manuscript
    The concept of adaptation is employed in many fields such as biology, psychology, cognitive sciences, robotics, social sciences, even literacy and art,1 and its meaning varies quite evidently according to the particular research context in which it is applied. We expect to find a particularly rich catalogue of meanings within evolutionary biology, where adaptation has held a particularly central role since Darwin’s The Origin of Species (1859) throughout important epistemological shifts and scientific findings that enriched and diversified the concept. Accordingly, (...)
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  35. Toll-like receptor signaling in vertebrates: Testing the integration of protein, complex, and pathway data in the Protein Ontology framework.Cecilia Arighi, Veronica Shamovsky, Anna Maria Masci, Alan Ruttenberg, Barry Smith, Darren Natale, Cathy Wu & Peter D’Eustachio - 2015 - PLoS ONE 10 (4):e0122978.
    The Protein Ontology provides terms for and supports annotation of species-specific protein complexes in an ontology framework that relates them both to their components and to species-independent families of complexes. Comprehensive curation of experimentally known forms and annotations thereof is expected to expose discrepancies, differences, and gaps in our knowledge. We have annotated the early events of innate immune signaling mediated by Toll-Like Receptor 3 and 4 complexes in human, mouse, and chicken. The resulting ontology and annotation data set has (...)
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  36. "Mind in a Physical World: An Essay on the Mind-Body Problem and Mental Causation" by Jaegwon Kim.Tim Crane - 2000 - The Times Literary Supplement 1.
    As Jaegwon Kim points out in his excellent new book, “reductionism” has become something of a pejorative term in philosophy and related disciplines. But originally (eg, as expressed in Ernest Nagel’s 1961 The Structure of Science) reduction was supposed to be a form of explanation, and one may wonder whether it is reasonable to reject in principle the advances in knowledge which such explanations may offer. Nagel’s own view, illustrated famously by the reduction of thermodynamics to statistical mechanics, was (...)
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  37. Experimentation in Cognitive Neuroscience and Cognitive Neurobiology.Jacqueline Anne Sullivan - 2014 - In Levy Neil & Clausen Jens (eds.), Handbook on Neuroethics. Springer.
    Neuroscience is a laboratory-based science that spans multiple levels of analysis from molecular genetics to behavior. At every level of analysis experiments are designed in order to answer empirical questions about phenomena of interest. Understanding the nature and structure of experimentation in neuroscience is fundamental for assessing the quality of the evidence produced by such experiments and the kinds of claims that are warranted by the data. This article provides a general conceptual framework for thinking about evidence and (...)
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  38. From physics to biology by extending criticality and symmetry breakings.Giuseppe Longo & Maël Montévil - 2011 - Progress in Biophysics and Molecular Biology 106:340 - 347.
    Symmetries play a major role in physics, in particular since the work by E. Noether and H. Weyl in the first half of last century. Herein, we briefly review their role by recalling how symmetry changes allow to conceptually move from classical to relativistic and quantum physics. We then introduce our ongoing theoretical analysis in biology and show that symmetries play a radically different role in this discipline, when compared to those in current physics. By this comparison, we stress that (...)
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  39. Necessary Laws and Chemical Kinds.Nora Berenstain - 2014 - Australasian Journal of Philosophy 92 (4):631-647.
    Contingentism, generally contrasted with law necessitarianism, is the view that the laws of nature are contingent. It is often coupled with the claim that their contingency is knowable a priori. This paper considers Bird's (2001, 2002, 2005, 2007) arguments for the thesis that, necessarily, salt dissolves in water; and it defends his view against Beebee's (2001) and Psillos's (2002) contingentist objections. A new contingentist objection is offered and several reasons for scepticism about its success are raised. It is concluded that (...)
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  40. Gametogênese Animal: Espermatogênese e Ovogênese.Emanuel Isaque Cordeiro da Silva - manuscript
    GAMETOGÊNESE -/- Emanuel Isaque Cordeiro da Silva Instituto Agronômico de Pernambuco Departamento de Zootecnia – UFRPE Embrapa Semiárido -/- • _____OBJETIVO -/- Os estudantes bem informados, estão a buscando conhecimento a todo momento. O estudante de Veterinária e Zootecnia, sabe que a Reprodução é uma área de primordial importância para sua carreira. Logo, o conhecimento da mesma torna-se indispensável. No primeiro trabalho da série fisiologia reprodutiva dos animais domésticos, foi abordado de forma clara, didática e objetiva os mecanismos de diferenciação (...)
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  41. Estabelecimento da Gestação nos Animais.Emanuel Isaque Cordeiro da Silva - manuscript
    OBJETIVO A gestação nos mamíferos domésticos é um processo fisiológico que implica mudanças físicas, metabólicas e hormonais na fêmea, que culminam com o nascimento de um novo indivíduo. Desta forma, a compreensão de tais mudanças e como estas favorecem um ambiente ideal de desenvolvimento embrionário inicial, até a placentação e a fisiologia envolvidas durante esses processos é fundamental na tomada de decisões quanto à saúde reprodutiva da fêmea, na seleção de futuras matrizes e até mesmo para a saúde fetal e (...)
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  42. Recentering neuroscience on behavior: The interface between brain and environment is a privileged level of control of neural activity.Igor Branchi - 2022 - Neuroscience and Biobehavioral Reviews 138.
    Despite the huge and constant progress in the molecular and cellular neuroscience fields, our capability to understand brain alterations and treat mental illness is still limited. Therefore, a paradigm shift able to overcome such limitation is warranted. Behavior and the associated mental states are the interface between the central nervous system and the living environment. Since, in any system, the interface is a key regulator of system organization, behavior is proposed here as a unique and privileged level of control (...)
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  43. Is Polygamy Inherently Unequal?Gregg Strauss - 2012 - Ethics 122 (3):516-544.
    This article begins the task of assessing polygamy as a moral ideal. The structure of traditional polygamy, in which only one central spouse may marry multiple partners, necessarily yields two inequalities. The central spouse has greater rights and expectations within each marriage and greater control over the wider family. However, two alternative structures for polygamy can remove these inequalities. In polyfidelity, each spouse marries every other spouse in the family. In “molecular” polygamy, any spouses may marry a new (...)
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  44. Constructing a lattice of Infectious Disease Ontologies from a Staphylococcus aureus isolate repository.Albert Goldfain, Lindsay G. Cowell & Barry Smith - 2012 - In Goldfain Albert, Cowell Lindsay G. & Smith Barry (eds.), Proceeedings of the Third International Conference on Biomedical Ontology (CEUR 897).
    A repository of clinically associated Staphylococcus aureus (Sa) isolates is used to semi‐automatically generate a set of application ontologies for specific subfamilies of Sa‐related disease. Each such application ontology is compatible with the Infectious Disease Ontology (IDO) and uses resources from the Open Biomedical Ontology (OBO) Foundry. The set of application ontologies forms a lattice structure beneath the IDO‐Core and IDO‐extension reference ontologies. We show how this lattice can be used to define a strategy for the construction of a (...)
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  45. The Origins of Life: The Managed-Metabolism Hypothesis.John E. Stewart - 2019 - Foundations of Science 24 (1):171-195.
    The ‘managed-metabolism’ hypothesis suggests that a ‘cooperation barrier’ must be overcome if self-producing chemical organizations are to undergo the transition from non-life to life. This dynamical barrier prevents un-managed autocatalytic networks of molecular species from individuating into complex, cooperative organizations. The barrier arises because molecular species that could otherwise make significant cooperative contributions to the success of an organization will often not be supported within the organization, and because side reactions and other ‘free-riding’ processes will undermine cooperation. As (...)
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  46. The Origins of Life: The Managed-Metabolism Hypothesis.John E. Stewart - 2018 - Foundations of Science:1-25.
    The ‘managed-metabolism’ hypothesis suggests that a ‘cooperation barrier’ must be overcome if self-producing chemical organizations are to undergo the transition from non-life to life. This dynamical barrier prevents un-managed autocatalytic networks of molecular species from individuating into complex, cooperative organizations. The barrier arises because molecular species that could otherwise make significant cooperative contributions to the success of an organization will often not be supported within the organization, and because side reactions and other ‘free-riding’ processes will undermine cooperation. As (...)
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  47. Formal Biology and Compositional Biology as Two Kinds of Biological Theorizing.Rasmus Grønfeldt Winther - 2003 - Dissertation, Indiana University, Hps
    There are two fundamentally distinct kinds of biological theorizing. "Formal biology" focuses on the relations, captured in formal laws, among mathematically abstracted properties of abstract objects. Population genetics and theoretical mathematical ecology, which are cases of formal biology, thus share methods and goals with theoretical physics. "Compositional biology," on the other hand, is concerned with articulating the concrete structure, mechanisms, and function, through developmental and evolutionary time, of material parts and wholes. Molecular genetics, biochemistry, developmental biology, and physiology, (...)
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  48. Emergence and Evolution of Natural Languages: New Mathematical & Algorithmic Perspectives.Edward G. Belaga - manuscript
    In the search of new approaches to the problem of emergence and evolution of natural languages, Mathematics, Theoretical Computer Science, as well as Molecular Biology and Neuroscience, both deeply penetrated and profoundly inspired by concepts originated in Mathematics and Computer Science, represent today the richest pools of formal concepts, structures, and methods to borrow and to adapt.
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  49. Emergence and Evolution of Natural Languages: New Mathematical and Algorithmic Perspectives.Edward G. Belaga - 2008 - In Proceedings of Language, Communication and Cognition International Conference, Brighton, August 4th-7th 2008.
    In the search of new approaches to the problem of emergence and evolution of natural languages, Mathematics, Theoretical Computer Science, as well as Molecular Biology and Neuroscience, both deeply penetrated and profoundly inspired by concepts originated in Mathematics and Computer Science, represent today the richest pools of formal concepts, structures, and methods to borrow and to adapt.
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  50. Generation of Biological Patterns and Form: Some Physical, Mathematical and Logical Aspects.Alfred Gierer - 1981 - Progress in Biophysics and Molecular Biology 37 (1):1-48.
    While many different mechanisms contribute to the generation of spatial order in biological development, the formation of morphogenetic fields which in turn direct cell responses giving rise to pattern and form are of major importance and essential for embryogenesis and regeneration. Most likely the fields represent concentration patterns of substances produced by molecular kinetics. Short range autocatalytic activation in conjunction with longer range “lateral” inhibition or depletion effects is capable of generating such patterns (Gierer and Meinhardt, 1972). Non-linear reactions (...)
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