Results for 'Harold Hodes'

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Harold Hodes
Cornell University
  1. The Ethics of Non-Realist Fiction: Morality’s Catch-22.James Harold - 2007 - Philosophia 35 (2):145-159.
    The topic of this essay is how non-realistic novels challenge our philosophical understanding of the moral significance of literature. I consider just one case: Joseph Heller’s Catch-22. I argue that standard philosophical views, based as they are on realistic models of literature, fail to capture the moral significance of this work. I show that Catch-22 succeeds morally because of the ways it resists using standard realistic techniques, and suggest that philosophical discussion of ethics and literature must be pluralistic if it (...)
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  2. Immoralism and the Valence Constraint.James Harold - 2008 - British Journal of Aesthetics 48 (1):45-64.
    Immoralists hold that in at least some cases, moral fl aws in artworks can increase their aesthetic value. They deny what I call the valence constraint: the view that any effect that an artwork’s moral value has on its aesthetic merit must have the same valence. The immoralist offers three arguments against the valence constraint. In this paper I argue that these arguments fail, and that this failure reveals something deep and interesting about the relationship between cognitive and moral value. (...)
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  3. On the Ancient Idea That Music Shapes Character.James Harold - 2016 - Dao: A Journal of Comparative Philosophy 15 (3):341-354.
    Ancient Chinese and Greek thinkers alike were preoccupied with the moral value of music; they distinguished between good and bad music by looking at the music’s effect on moral character. The idea can be understood in terms of two closely related questions. Does music have the power to affect the ethical character of either listener or performer? If it does, is it better as music for doing so? I argue that an affirmative answers to both questions are more plausible than (...)
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  4. Autonomism Reconsidered.James Harold - 2011 - British Journal of Aesthetics 51 (2):137-147.
    This paper has three aims: to define autonomism clearly and charitably, to offer a positive argument in its favour, and to defend a larger view about what is at stake in the debate between autonomism and its critics. Autonomism is here understood as the claim that a valuer does not make an error in failing to bring her moral and aesthetic judgements together, unless she herself values doing so. The paper goes on to argue that reason does not require the (...)
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  5. The Value of Fidelity in Adaptation.James Harold - 2018 - British Journal of Aesthetics 58 (1):89-100.
    © British Society of Aesthetics 2018. Published by Oxford University Press on behalf of the British Society of Aesthetics. All rights reserved. For Permissions, please email: journals.permissions@oup.comThe adaptation of literary works into films has been almost completely neglected as a philosophical topic. I discuss two questions about this phenomenon:What do we mean when we say that a film is faithful to its source?Is being faithful to its source a merit in a film adaptation?In response to, I set out two distinct (...)
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  6.  39
    Clearing the Ground: How to Think About Realism and Antirelaism.Greg P. Hodes - manuscript
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  7. Literary Cognitivism.James Harold - 2015 - In Noel Carroll & John Gibson (eds.), Routledge Companion to Philosophy of Literature. Routledge.
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  8. Literature, Genre Fiction, and Standards of Criticism.James Harold - 2011 - Nonsite.Org 1 (4).
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  9. Narrative Engagement with Atonement and The Blind Assasin.James Harold - 2005 - Philosophy and Literature 29 (1):130-145.
    Two recent novels, Ian McEwan’s Atonement and Margaret Atwood’s The Blind Assassin, are philosophically instructive. These books are interesting, I argue, because they reveal something about understanding and appreciating narrative. They show us that audience’s participation in narrative is much more subtle and complex than philosophers generally acknowledge. An analysis of these books reveals that narrative imagining is not static or unified, but dynamic and multipolar. I argue that once the complexity of narrative engagement is better understood, some prominent philosophical (...)
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  10. Cognitivism, Non-Cognitivism, and Skepticism About Folk Psychology.James Harold - 2012 - Philosophical Psychology 25 (2):165 - 185.
    In recent years it has become more and more difficult to distinguish between metaethical cognitivism and non-cognitivism. For example, proponents of the minimalist theory of truth hold that moral claims need not express beliefs in order to be (minimally) truth-apt, and yet some of these proponents still reject the traditional cognitivist analysis of moral language and thought. Thus, the dispute in metaethics between cognitivists and non-cognitivists has come to be seen as a dispute over the correct way to characterize our (...)
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  11. TGF-Beta Signaling Proteins and the Protein Ontology.Arighi Cecilia, Liu Hongfang, Natale Darren, Barker Winona, Drabkin Harold, Blake Judith, Barry Smith & Wu Cathy - 2009 - BMC Bioinformatics 10 (Suppl 5):S3.
    The Protein Ontology (PRO) is designed as a formal and principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from a classification of proteins on the basis of evolutionary relationships at the homeomorphic level to the representation of the multiple protein forms of a gene, including those resulting from alternative splicing, cleavage and/or posttranslational modifications. Focusing specifically on the TGF-beta signaling proteins, we describe the building, curation, usage and dissemination of PRO. PRO provides a framework (...)
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  12.  65
    "The 'Causes' of the Hard Problem".Greg P. Hodes - 2019 - Neuroquantology 16 (9):46-49.
    This note calls attention to the fact that efficient causes – the sort of cause that changes something or makes something happen – can play no constitutive role in the immediate, cognitively conscious relation between cognitive subject and a cognit-ive object. It notes that: (1) it is a necessary condition for an efficient causal relation that it alter its relata; and (2) it is a necessary condition for a conscious cognitive relat-ion that it does not alter its relata. This has (...)
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  13. Mixed Feelings: Conflicts in Emotional Responses to Film.James Harold - 2010 - Midwest Studies in Philosophy 34 (1):280-294.
    Some films scare us; some make us cry; some thrill us. Some of the most interesting films, however, leave us suspended between feelings – both joyous and sad, or angry and serene. This paper attempts to explain how this can happen and why it is important. I look closely at one film that creates and exploits these conflicted responses. I argue that cases of conflict in film illuminate a pair of vexing questions about emotion in film: (1) To what extent (...)
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  14. Flexing the Imagination.James Harold - 2003 - Journal of Aesthetics and Art Criticism 61 (3):247–258.
    I explore the claim that “fictive imagining” – imagining what it is like to be a character – can be morally dangerous. In particular, I consider the controversy over William Styron’s imagining the revolutionary protagonist in his Confessions of Nat Turner. I employ Ted Cohen’s model of fictive imagining to argue, following a generally Kantian line of thought, that fictive imagining can be dangerous if one has the wrong motives. After considering several possible motives, I argue that only internally directed (...)
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  15. Can Expressivists Tell the Difference Between Beauty and Moral Goodness?James Harold - 2008 - American Philosophical Quarterly 45 (3):289-300.
    One important but infrequently discussed difficulty with expressivism is the attitude type individuation problem.1 Expressivist theories purport to provide a unified account of normative states. Judgments of moral goodness, beauty, humor, prudence, and the like, are all explicated in the same way: as expressions of attitudes, what Allan Gibbard calls “states of norm-acceptance”. However, expressivism also needs to explain the difference between these different sorts of attitude. It is possible to judge that a thing is both aesthetically good and morally (...)
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  16. Intentional Structure and the Identity Theory of Knowledge in Bernard Lonergan: A Problem with Rational Self-Appropriation.Greg P. Hodes - 2002 - International Philosophical Quarterly 42 (4):437-452.
    Bernard Lonergan has argued for a theory of cognition that is transcendentally secure, that is, one such that any plausible attempt to refute it must presuppose its correctness, and one that also grounds a correct metaphysics and ontology. His proposal combines an identity theory of knowledge with an intentional relation between knower and known. It depends in a crucial way upon an appropriation of one’s own cognitional motives and acts, that is, upon “knowing one’s own knowing.” I argue that because (...)
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  17. Without Taste: Psychopaths and the Appreciation of Art.Heidi Maibom & James Harold - 2010 - Nouvelle Revue d'Esthétique 6:151-63.
    Psychopaths are the bugbears of moral philosophy. They are often used as examples of perfectly rational people who are nonetheless willing to do great moral wrong without regret; hence the disorder has received the epithet “moral insanity” (Pritchard 1835). But whereas philosophers have had a great deal to say about psychopaths’ glaring and often horrifying lack of moral conscience, their aesthetic capacities have received hardly any attention, and are generally assumed to be intact or even enhanced. Popular culture often portrays (...)
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  18. Sans goût : l’art et le psychopathe.H. Maibom & J. Harold - 2010 - Nouvelle Revue d'Esthétique 6.
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  19. Is Xunzi’s Virtue Ethics Susceptible to the Problem of Alienation?James Harold - 2011 - Dao: A Journal of Comparative Philosophy 10 (1):71-84.
    In this essay I argue that if Kantian and consequentialist ethical theories are vulnerable to the so-called “problem of alienation,” a virtue ethics based on Xunzi’s ethical writings will also be vulnerable to this problem. I outline the problem of alienation, and then show that the role of ritual ( li ) in Xunzi’s theory renders his view susceptible to the problem as it has been traditionally understood. I consider some replies on Xunzi’s behalf, and also discuss whether the problem (...)
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  20. What Would It "Be Like" to Solve the Hard Problem?: Cognition, Consciousness, and Qualia Zombies.Greg P. Hodes - 2005 - Neuroquantology 3 (1):43-58.
    David Chalmers argues that consciousness -- authentic, first-person, conscious consciousness -- cannot be reduced to brain events or to any physical event, and that efforts to find a workable mind-body identity theory are, therefore, doomed in principle. But for Chalmers and non-reductionist in general consciousness consists exclusively, or at least paradigmatically, of phenomenal or qualia-consciousness. This results in a seriously inadequate understanding both of consciousness and of the “hard problem.” I describe other, higher-order cognitional events which must be conscious if (...)
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  21. Natural Deduction for Modal Logic with a Backtracking Operator.Jonathan Payne - 2015 - Journal of Philosophical Logic 44 (3):237-258.
    Harold Hodes in [1] introduces an extension of first-order modal logic featuring a backtracking operator, and provides a possible worlds semantics, according to which the operator is a kind of device for ‘world travel’; he does not provide a proof theory. In this paper, I provide a natural deduction system for modal logic featuring this operator, and argue that the system can be motivated in terms of a reading of the backtracking operator whereby it serves to indicate modal (...)
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  22.  64
    Lonergan and Perceptual Direct Realism: Facing Up to the Problem of the External Material World.Greg Hodes - 2007 - International Philosophical Quarterly 47 (2):203-220.
    In this paper I call attention to the fact that Lonergan gives two radically opposed accounts of how sense perception relates us to the external world and of how we know that this relation exists. I argue that the position that Lonergan characteristically adopts is not the one implied by what is most fundamental in his theory of cognition. I describe the initial epistemic position with regard to the problem of skepticism about the external material world that is in fact (...)
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  23.  46
    Adieu BonJour: Getting Cognitive Possession of "Getting Cognitive Possession".Greg Hodes - unknown
    In this paper I argue that Bonjour’s claim that empirical beliefs can only be justified by other empirical beliefs and his use of non-normative “spontaneous empirical beliefs” and the “The Doxastic Preumption” fail to solve the problems of coherence theory. I propose a justification of empirical (and other beliefs) based on the work of B. Lonergan.
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  24.  47
    Lonergan and Perceptual Direct Realism: Facing Up to the Problem of the External Material World.Greg Hodes - 2007 - International Philosophical Quarterly 47 (2):203-220.
    In this paper I call attention to the fact that Lonergan gives two radically opposed accounts of how sense perception relates us to the external world and of how we know that this relation exists. I argue that the position that Lonergan characteristically adopts is not the one implied by what is most fundamental in his theory of cognition. I describe the initial epistemic position with regard to the problem of skepticism about the external material world that is in fact (...)
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  25.  25
    North Korean Decisionmaking.John V. Parachini, Scott W. Harold, Gian Gentile, Derek Grossman, K. I. M. Leah Heejin, M. A. Logan, Michael J. Mazarr & Linda Robinson - 2020 - Santa Monica, Calif., USA: The RAND Corporation.
    Discerning the decisionmaking of Kim Jong-Un and the North Korean regime on issues of peaceful engagement and warlike actions endures as a mighty challenge for U.S. intelligence analysts and policymakers. In this report, we seek to inform analysis of Democratic People’s Republic of Korea (DPRK) leadership decisionmaking. To do so, we use three discussion papers that were written to facilitate discussion of an interagency working group. The three papers are assembled here in a single report. The first discussion paper describes (...)
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  26.  78
    Review of Samuel Scolnicov, Plato’s Method of Hypothesis in the Middle Dialogues, Edited by Harold Tarrant. [REVIEW]Evan Rodriguez - 2019 - Journal of the History of Philosophy 57 (3):549-550.
    This volume, a lightly-edited version of Professor Samuel Scolnicov’s 1974 Ph.D. thesis, is a fitting tribute to his impressive career. It will perhaps be most useful for those interested in better understanding Scolnicov’s work and his views on Plato as a whole, not least for the comprehensive list of his publications that requires a full twelve pages of print. Scholars with an interest in Plato’s method of hypothesis will also find some useful remarks on key passages in the Meno, Phaedo, (...)
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  27. Here is Harold Pinter.Subhasis Chattopadhyay - 2005 - THE BULLETIN OF THE RAMAKRISHNA MISSION INSTITUTE OF CULTURE (December):561-66.
    This essay interrogates the philosophy of Pinter through analyses of his language, religious understanding of life and through passing references to Buddhism.
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  28. The Wonder of Consciousness: Understanding the Mind Through Philosophical Reflection. By Harold Langsam. (The MIT Press, 2011. Pp. X + 234, Price £24.95 Cloth.). [REVIEW]Joe Morrison - 2013 - Philosophical Quarterly 63 (250):195-197.
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  29.  93
    Review Don Ross, James Ladyman, Harold Kincaid (eds.): Scientific Metaphysics. [REVIEW]Matthias Neuber - 2014 - Zeitschrift für Philosophische Forschung 68 (3):426-430.
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  30.  61
    Major, John S., Sarah A. Queen, Andrew Seth Meyer, and Harold D. Roth (Translators and Editors), The Huainanzi, A Guide to the Theory and Practice of Government in Early Han China of L Iu An, King of Huainan, New York: Columbia University Press, 2010, Xi + 986 Pages and Major, John S., Sarah A. Queen, Andrew Seth Meyer, and Harold D. Roth (Translators and Editors), The Essential Huainanzi of L Iu An, King of Huainan, New York: Columbia University Press, 2012, Vii + 252 Pages. [REVIEW]James D. Sellmann - 2013 - Dao: A Journal of Comparative Philosophy 12 (2):267-270.
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  31.  64
    Harold Camping and the Second Stillborn Apocalypse.Edmund Cohen - 2011 - Free Inquiry 31:43-50.
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  32.  57
    Reading Slant During Covid-19: A Contrarian List.Subhasis Chattopadhyay - 2020 - Prabuddha Bharata or Awakened India 125 (6):491-494.
    Today's academia is obsessed about writing and speaking gobbledygook. At least most of the time. It has little time in sitting still and actually reading fiction, poetry and say, Wittgenstein. One pretends to say fancy things about these authors but one does not actually read books anymore. COVID 19 Lockdown prompted this author to answer queries from students and peers about a reading list. So prepare a wide ranging list he did which covers everything from the version of Mahabharata one (...)
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  33. Classifying Psychopathology: Mental Kinds and Natural Kinds.Harold Kincaid & Jacqueline Anne Sullivan - 2014 - In Harold Kincaid & Jacqueline Anne Sullivan (eds.), Classifying Psychopathology: Mental Kinds and Natural Kinds. MIT Press. pp. 1-10.
    In this volume, leading philosophers of psychiatry examine psychiatric classification systems, including the Diagnostic and Statistical Manual of Mental Disorders, asking whether current systems are sufficient for effective diagnosis, treatment, and research. Doing so, they take up the question of whether mental disorders are natural kinds, grounded in something in the outside world. Psychiatric categories based on natural kinds should group phenomena in such a way that they are subject to the same type of causal explanations and respond similarly to (...)
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  34. The Phenomenal Powers View and the Meta-Problem of Consciousness.Hedda Hassel Mørch - 2020 - Journal of Consciousness Studies 27 (5-6):131-142.
    The meta-problem of consciousness is the problem of explaining why we have the intuition that there is a hard problem of consciousness. David Chalmers briefly notes that my phenomenal powers view may be able to answer to this challenge in a way that avoids problems (having to do with avoiding coincidence) facing other realist views. In this response, I will briefly outline the phenomenal powers view and my main arguments for it and—drawing in part on a similar view developed by (...)
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  35. The Protein Ontology: A Structured Representation of Protein Forms and Complexes.Darren Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang & Cathy H. Wu - 2011 - Nucleic Acids Research 39 (1):D539-D545.
    The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of protein (...)
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  36. In Defence of the Letter of Fictionalism.Harold Noonan - 1994 - Analysis 54 (3):133-139.
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  37. Full‐Frontal Morality: The Naked Truth About Gender.Talia Mae Bettcher - 2012 - Hypatia 27 (2):319-337.
    This paper examines Harold Garfinkel's notion of the natural attitude about sex and his claim that it is fundamentally moral in nature. The author looks beneath the natural attitude in order to explain its peculiar resilience and oppressive force. There she reveals a moral order grounded in the dichotomously sexed bodies so constituted through boundaries governing privacy and decency. In particular, naked bodies are sex-differentiated within a system of genital representation through gender presentation—a system that helps constitute the very (...)
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  38. National Center for Biomedical Ontology: Advancing Biomedicine Through Structured Organization of Scientific Knowledge.Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, Misra Sima, Westerfield Monte, Ashburner Michael, Christopher G. Chute, Ida Sim, Harold Solbrig, M. A. Storey, Barry Smith, John D. Richter, Natasha Noy & Mark A. Musen - 2006 - Omics: A Journal of Integrative Biology 10 (2):185-198.
    The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow scientists to record, manage, and disseminate biomedical information and knowledge in machine-processable form. The goals of the Center are (1) to help unify the divergent and isolated efforts in ontology development by promoting high quality open-source, standards-based tools to create, manage, and use ontologies, (2) to create (...)
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  39. Modal Realism, Still At Your Convenience.Mark Jago & Harold Noonan - 2016 - Analysis:anx037.
    Divers (2014) presents a set of de re modal truths which, he claims, are inconvenient for Lewisean modal realism. We argue that there is no inconvenience for Lewis.
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  40.  95
    Platos Idee des Guten.R. FERBER - 2015 - St. Augustin: Academia Verlag.
    At the centre of the monograph (1984, first edition) lies a detailed interpretation and critique of the idea of the Good in the Republic. The main thesis of the interpretation runs as follows: The idea of the Good functions as a third item between thinking and being. The main purpose of the monograph is to introduce the systematic problem of the third item via the historical problem of the idea of the Good. The second, enlarged edition (1989) gives a new (...)
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  41. Objects of Thought.Ian Rumfitt - 2016 - In Gary Ostertag (ed.), Meaning and Other Things: Essays on the Philosophy of Stephen Schiffer. Oxford University Press.
    In his book The Things We Mean, Stephen Schiffer advances a subtle defence of what he calls the ‘face-value’ analysis of attributions of belief and reports of speech. Under this analysis, ‘Harold believes that there is life on Venus’ expresses a relation between Harold and a certain abstract object, the proposition that there is life on Venus. The present essay first proposes an improvement to Schiffer’s ‘pleonastic’ theory of propositions. It then challenges the face-value analysis. There will be (...)
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  42. Medical Models of Addiction.Harold Kincaid & Jacqueline Anne Sullivan - 2010 - In Kincaid Ross (ed.), What is Addiction?
    Biomedical science has been remarkably successful in explaining illness by categorizing diseases and then by identifying localizable lesions such as a virus and neoplasm in the body that cause those diseases. Not surprisingly, researchers have aspired to apply this powerful paradigm to addiction. So, for example, in a review of the neuroscience of addiction literature, Hyman and Malenka (2001, p. 695) acknowledge a general consensus among addiction researchers that “[a]ddiction can appropriately be considered as a chronic medical illness.” Like other (...)
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  43. Medical Ethics in Qiṣāṣ (Eye-for-an-Eye) Punishment: An Islamic View; an Examination of Acid Throwing.Hossein Dabbagh, Amir Alishahi Tabriz & Harold G. Koenig - 2016 - Journal of Religion and Health 55 (4):1426–1432.
    Physicians in Islamic countries might be requested to participate in the Islamic legal code of qiṣāṣ, in which the victim or family has the right to an eye-for-an-eye retaliation. Qiṣāṣ is only used as a punishment in the case of murder or intentional physical injury. In situations such as throwing acid, the national legal system of some Islamic countries asks for assistance from physicians, because the punishment should be identical to the crime. The perpetrator could not be punished without a (...)
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  44. To Not Understand, but Not Misunderstand: Wittgenstein on Shakespeare.William Day - 2013 - In Sascha Bru, Wolfgang Huemer & Daniel Steuer (eds.), Wittgenstein Reading. Berlin: pp. 39-53.
    Wittgenstein's lack of sympathy for Shakespeare's works has been well noted by George Steiner and Harold Bloom among others. Wittgenstein writes in 1950, for instance: "It seems to me as though his pieces are, as it were, enormous sketches, not paintings; as though they were dashed off by someone who could permit himself anything, so to speak. And I understand how someone may admire this & call it supreme art, but I don't like it." Of course, the animosity of (...)
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  45. Grading Religions.Noriaki Iwasa - 2011 - Sophia 50 (1):189-209.
    This essay develops standards for grading religions including various forms of spiritualism. First, I examine the standards proposed by William James, John Hick, Paul Knitter, Dan Cohn-Sherbok, and Harold Netland. Most of them are useful in grading religions with or without conditions. However, those standards are not enough for refined and piercing evaluation. Thus, I introduce standards used in spiritualism. Although those standards are for grading spirits and their teachings, they are useful in refined and piercing evaluation of religious (...)
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  46. The Loneliness of Stages.D. Braddon-Mitchell & K. Miller - 2004 - Analysis 64 (3):235-242.
    Harold Noonan has recently argued (2003) that one of Lewis’s (1983: 76– 77) arguments for the view that objects persist by perduring is flawed. Lewis’s argument can be divided into two main sections, the first of which attempts to show that it is possible that there exists a world of temporal parts or stages, and the second, which attempts to show that our world is such a world. Noonan claims that there is a flaw in each of these two (...)
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  47. Reprobation as Shared Inquiry: Teaching the Liberal Arts in Prison.Joshua A. Miller & Daniel Harold Levine - 2015 - Radical Philosophy Review 18 (2):287-308.
    Respect for victims requires that we have social systems for punishing and condemning (reproving) serious crimes. But, the conditions of social marginalization and political subordination of the communities from which an overwhelming number of prisoners in the United States come place serious barriers in the face of effective reprobation. Mass incarceration makes this problem worse by disrupting and disrespecting entire communities. While humanities education in the prisons is far from a total solution, it is one way to make reprobation meaningful, (...)
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  48. Modal Realism, Still at Your Convenience.Harold Noonan & Mark Jago - 2017 - Analysis 77 (2):299-303.
    Divers presents a set of de re modal truths which, he claims, are inconvenient for Lewisean modal realism. We argue that there is no inconvenience for Lewis.
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  49.  65
    The Representation of Protein Complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.
    Representing species-specific proteins and protein complexes in ontologies that are both human and machine-readable facilitates the retrieval, analysis, and interpretation of genome-scale data sets. Although existing protin-centric informatics resources provide the biomedical research community with well-curated compendia of protein sequence and structure, these resources lack formal ontological representations of the relationships among the proteins themselves. The Protein Ontology (PRO) Consortium is filling this informatics resource gap by developing ontological representations and relationships among proteins and their variants and modified forms. Because (...)
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  50. Protein Ontology: A Controlled Structured Network of Protein Entities.A. Natale Darren, N. Arighi Cecilia, A. Blake Judith, J. Bult Carol, R. Christie Karen, Cowart Julie, D’Eustachio Peter, D. Diehl Alexander, J. Drabkin Harold, Helfer Olivia, Barry Smith & Others - 2013 - Nucleic Acids Research 42 (1):D415-21..
    The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates to (...)
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