Abstract In this paper I embrace what Brian Keeley calls in “Of Conspiracy Theories” the absurdist horn of the dilemma for philosophers who criticize such theories. I thus defend the view that there is indeed something deeply epistemically wrong with conspiracy theorizing. My complaint is that conspiracy theories apply intentional explanations to situations that give rise to special problems concerning the elimination of competing intentional explanations.

In this paper I articulate a view of doxastic control that helps defend the legitimacy of our practice of blaming people for their beliefs. I distinguish between three types of doxastic control: intention-based, reason-based, and influence-based. First I argue that, although we lack direct intention-based control over our beliefs, such control is not necessary for legitimate doxastic blame. Second, I suggest that we distinguish two types of reason-responsiveness: sensitivity to reasons and appreciation of reasons. I argue that while both capacities (...) are necessary for satisfying the control condition, neither is sufficient. Finally, I defend an influence-based view of doxastic control according to which we have the capacity to execute intentions to engage in reflection that causally influences our beliefs in positive epistemic ways. This capacity is both necessary and sufficient for satisfying the control condition for legitimate doxastic blame. I end by defending the view from two objections: that reflection is not necessary for meeting the control condition, and that it is not sufficient. (shrink)

This paper seeks to answer the question: Can contemporary forms of artificial intelligence be creative? To answer this question, I consider three conditions that are commonly taken to be necessary for creativity. These are novelty, value, and agency. I argue that while contemporary AI models may have a claim to novelty and value, they cannot satisfy the kind of agency condition required for creativity. From this discussion, a new condition for creativity emerges. Creativity requires curiosity, a motivation to pursue epistemic (...) goods. I argue that contemporary AI models do not satisfy this new condition. Because they lack both agency and curiosity, it is a mistake to attribute the same sort of creativity to AI that we prize in humans. Finally, I consider the question of whether these AI models stand to make human creativity in the arts and sciences obsolete, despite not being creative themselves. I argue, optimistically, that this is unlikely. (shrink)

In this paper, I solve a puzzle generated by three conflicting claims about the relationship between faith, belief, and control: according to the Identity Thesis, faith is a type of belief, and according to Fideistic Voluntarism, we sometimes have control over whether or not we have faith, but according to Doxastic Involuntarism, we never have control over what we believe. To solve the puzzle, I argue that the Identity Thesis is true, but that either Fideistic Voluntarism or Doxastic Voluntarism is (...) false, depending on how we understand "control." I distinguish two notions of control: direct intention-based control and indirect reflective control. I argue that though we have direct intention-based control over neither belief nor faith, we have indirect reflective control over each of them. Moreover, indirect reflective control helps explain how we can be held accountable for each. (shrink)

In this chapter, we explore whether agents have an epistemic duty to eradicate implicit bias. Recent research shows that implicit biases are widespread and they have a wide variety of epistemic effects on our doxastic attitudes. First, we offer some examples and features of implicit biases. Second, we clarify what it means to have an epistemic duty, and discuss the kind of epistemic duties we might have regarding implicit bias. Third, we argue that we have an epistemic duty to eradicate (...) implicit biases that have negative epistemic impact. Finally, we defend this view against the objection that we lack the relevant control over implicit bias that’s required for such a duty. We argue that we have a kind of reflective control over the implicit biases that we are duty-bound to eradicate. And since, as we show, we have this control over a wide variety of implicit biases, there are a lot of implicit biases that we have epistemic duties to eradicate. (shrink)

Technological developments have resulted in tremendous increases in the volume and diversity of the data and information that must be processed in the course of biomedical and clinical research and practice. Researchers are at the same time under ever greater pressure to share data and to take steps to ensure that data resources are interoperable. The use of ontologies to annotate data has proven successful in supporting these goals and in providing new possibilities for the automated processing of data and (...) information. In this chapter, we describe different types of vocabulary resources and emphasize those features of formal ontologies that make them most useful for computational applications. We describe current uses of ontologies and discuss future goals for ontology-based computing, focusing on its use in the field of infectious diseases. We review the largest and most widely used vocabulary resources relevant to the study of infectious diseases and conclude with a description of the Infectious Disease Ontology (IDO) suite of interoperable ontology modules that together cover the entire infectious disease domain. (shrink)

Among our conscious states are conscious thoughts. The question at the center of the recent growing literature on cognitive phenomenology is this: In consciously thinking P, is there thereby any phenomenology—is there something it’s like? One way of clarifying the question is to say that it concerns whether there is any proprietary phenomenology associated with conscious thought. Is there any phenomenology due to thinking, as opposed to phenomenology that is due to some co-occurring sensation or mental image? In this paper (...) we will present two arguments that a “yes” answer to this question of cognitive phenomenology can be obtained via appeal to the HOT theory of consciousness, especially the version articulated and defended by David Rosenthal. (shrink)

This chapter argues that mental fictionalism can only be a successful account of our ordinary folk-psychological practices if it can in some way preserve its original function, namely its explanatory aspect. A too strong commitment to the explanatory role moves fictionalism unacceptably close to the realist or eliminativist interpretation of folk psychology. To avoid this, fictionalists must degrade or dispense with this explanatory role. This motivation behind the fictionalist movement seems to be rather similar to that of Sellars when he (...) came up with the Myth of Jones, his proto-theory of mental concepts. He was faced with the problem of preserving the explanatory status of mental concepts without turning them into proper theoretical entities. By introducing the Sellarsian proto-theory of concepts related to the mental and outlining its main points, this chapter aims to provide a critique of the two versions of mental fictionalism that are arguably the strongest: Adam Toon’s prop-oriented pretence theory and Tamás Demeter’s expressive storyism. (shrink)

Many so-called problems in contemporary philosophy of mind depend for their expression on a collection of inter-defined technical terms, a few of which are qualia, phenomenal property, and what-it’s-like-ness. I express my scepticism about Keith Frankish’s illusionism, the view that people are generally subject to a systematic illusion that any properties are phenomenal, and scout the relative merits of two alternatives to Frankish’s illusionism. The first is phenomenal meta-illusionism, the view that illusionists such as Frankish, in holding their view, are (...) themselves thereby under an illusion. The second is qualia quietism, the view that nothing worth saying is said by employing any of the aforementioned inter-defined technical terms. (shrink)

The goal of the present paper is to defend against a certain line of attack the view that conscious experience of color is no more fine-grained that the repertoire of non- demonstrative concepts that a perceiver is able to bring to bear in perception. The line of attack in question is an alleged empirical argument - the Diachronic Indistinguishability Argument - based on pairs of colors so similar that they can be discriminated when simultaneously presented but not when presented across (...) a memory delay. My aim here is to show that this argument fails. (shrink)

Often, sensory input underdetermines perception. One such example is the perception of illusory contours. In illusory contour perception, the content of the percept includes the presence of a contour that is absent from the informational content of the sensation. (By “sensation” I mean merely information-bearing events at the transducer level. I intend no further commitment such as the identification of sensations with qualia.) I call instances of perception underdetermined by sensation “underdetermined perception.” The perception of illusory contours is just one (...) kind of underdetermined perception. The focus of this chapter is another kind of underdetermined perception: what I shall call "active perception". Active perception occurs in cases in which the percept, while underdetermined by sensation, is determined by a combination of sensation and action. The phenomenon of active perception has been used by several to argue against the positing of representations in explanations of sensory experience, either by arguing that no representations need be posited or that far fewer than previously thought need be posited. Such views include, but are not limited to those of Gibson (1966, 1986), Churchland. (shrink)

'Sliders' are a speculative introspection-enhancing future technology allowing humans with cybernetic brain implants to precisely and voluntarily modulate moods and other mental states that vary along a one-dimensional scale. Such future humans may, for example, use the Sliders interface to temporarily present a COWARDLY–COURAGEOUS 'slider' in their visual field, and with a mere act of will change their level of courage from a 60 to a 65 on the 100-point scale. The present article discusses the implications of such a technology (...) in the form of an epistolary fiction in which the author's future persona warns the reader of the dire consequences and hardearned insights arising from widespread Slider use and abuse. (shrink)

s Gibson (1982) correctly points out, despite Quine’s brief flirtation with a “mitigated phenomenalism” (Gibson’s phrase) in the late 1940’s and early 1950’s, Quine’s ontology of 1953 (“On Mental Entities”) and beyond left no room for non-physical sensory objects or qualities. Anyone familiar with the contemporary neo-dualist qualia-freak-fest might wonder why Quinean lessons were insufficiently transmitted to the current generation.

A movement dedicated to applying neuroscience to traditional philosophical problems and using philosophical methods to illuminate issues in neuroscience began about twenty-five years ago. Results in neuroscience have affected how we see traditional areas of philosophical concern such as perception, belief-formation, and consciousness. There is an interesting interaction between some of the distinctive features of neuroscience and important general issues in the philosophy of science. And recent neuroscience has thrown up a few conceptual issues that philosophers are perhaps best trained (...) to deal with. After sketching the history of the movement, we explore the relationships between neuroscience and philosophy and introduce some of the specific issues that have arisen. (shrink)

According to representionalists, qualia-the introspectible properties of sensory experience-are exhausted by the representational contents of experience. Representationalists typically advocate an informational psychosemantics whereby a brain state represents one of its causal antecedents in evolutionarily determined optimal circumstances. I argue that such a psychosemantics may not apply to certain aspects of our experience, namely, our experience of space in vision, hearing, and touch. I offer that these cases can be handled by supplementing informational psychosemantics with a procedural psychosemantics whereby a representation (...) is about its effects instead of its causes. I discuss conceptual and empirical points that favor a procedural representationalism for our experience of space. (shrink)

Control consciousness is the awareness or experience of seeming to be in control of one’s actions. One view, which I will be arguing against in the present paper, is that control consciousness is a form of sensory consciousness. In such a view, control consciousness is exhausted by sensory elements such as tactile and proprioceptive information. An opposing view, which I will be arguing for, is that sensory elements cannot be the whole story and must be supplemented by direct contributions of (...) nonsensory, motor elements. More specifically, I will be arguing for the view that the neural basis of control consciousness is constituted by states of recurrent activation in relatively intermediate levels of the motor hierarchy. (shrink)

Many have urged that the biggest obstacles to a physicalistic understanding of consciousness are the problems raised in connection with the subjectivity of consciousness. These problems are most acutely expressed in consideration of the knowledge argument against physicalism. I develop a novel account of the subjectivity of consciousness by explicating the ways in which mental representations may be perspectival. Crucial features of my account involve analogies between the representations involved in sensory experience and the ways in which pictorial representations exhibit (...) perspectives or points of view. I argue that the resultant account of subjectivity provides a basis for the strongest response physicalists can give to the knowledge argument. (shrink)

The object of realist metaphysics is generally thought to be to describe the structure of the world as it is in itself, or, alternatively, to determine precisely what is real. The purpose of this essay is to suggest that, although there have been many attempts to achieve this goal, they all fall down, not simply because they have misconstrued the nature of the in-itself or precisely what is real, but because, more fundamentally, they are not clear about what it is (...) to talk about the in-itself or the real. In short, contemporary realism, both continental and analytic, does not have an adequate concept of reality. (shrink)

Higher-Order Representational theories of consciousness — HORs — primarily seek to explain a mental state’s being conscious in terms of the mental state’s being represented by another mental state. First-Order Representational theories of consciousness — FORs — primarily seek to explain a property’s being phenomenal in terms of the property being represented in experience. Despite differences in both explanans and explananda, HORs and FORs share a reliance on there being such a property as being represented. In this paper I develop (...) an argument — the Unicorn Argument — against both HORs and FORs. The core of the Unicorn is that since there are mental rep- resentations of things that do not exist, there cannot be any such prop- erty as being represented, and thus no such property with which to identify either being conscious or being phenomenal. (shrink)

I develop an argument that believing in the survivability of a mind uploading procedure conveys value to its believers that is assessable independently of assessing the truth of the belief. Regardless of whether the first-order metaphysical belief is true, believing it conveys a kind of Darwinian fitness to the believer. Of course, a further question remains of whether having that Darwinian property can be a basis—in a rational sense of being a basis—for one’s holding the belief. I’ll also make some (...) remarks in the present article toward answering that latter question. (shrink)

Deviant phenomenal knowledge is knowing what it’s like to have experiences of, e.g., red without actually having had experiences of red. Such a knower is a deviant. Some physicalists have argued and some anti-physicalists have denied that the possibility of deviants undermines anti-physicalism and the Knowledge Argument. The current paper presents new arguments defending the deviant-based attacks on anti-physicalism. Central to my arguments are considerations concerning the psychosemantic underpinnings of deviant phenomenal knowledge. I argue that physicalists are in a superior (...) position to account for the conditions in virtue of which states of deviants constitute representations of phenomenal facts. (shrink)

I argue against a class of philosophical views of color perception, especially insofar as such views posit the existence of color sensations. I argue against the need to posit such nonconceptual mental intermediaries between the stimulus and the eventual conceptualized perceptual judgment. Central to my arguments are considerations of certain color illusions. Such illusions are best explained by reference to high-level, conceptualized knowledge concerning, for example, object identity, likely lighting conditions, and material composition of the distal stimulus. Such explanations obviate (...) the need to appeal to nonconceputal mental links in the causal chains eventuating in conceptualized color discriminations. (shrink)

Realism about consciousness conjoins a claim that consciousness exists with a claim that the existence is independent in some interesting sense. Consciousness realism so conceived may thus be opposed by a variety of anti-realisms, distinguished from each other by denying the first, the second, or both of the realist’s defining claims. I argue that Dennett’s view of consciousness is best read as an anti-realism that affirms the existence of consciousness while denying an important independence claim.

Eleonore Stump insightfully develops Aquinas’s theodicy to account for a significant source of human suffering, namely the undermining of desires of the heart. Stump argues that what justifies God in allowing such suffering are benefits made available to the sufferer through her suffering that can defeat the suffering by contributing to the fulfillment of her heart’s desires. We summarize Stump’s arguments for why such suffering requires defeat and how it is defeated. We identify three problems with Stump’s account of how (...) such suffering is defeated and offer solutions to each. We defend and strengthen Stump’s response to the hardest cases for her view, and explain what her view demands of God. (shrink)

In this paper I discuss one of the key issuesin the philosophy of neuroscience:neurosemantics. The project of neurosemanticsinvolves explaining what it means for states ofneurons and neural systems to haverepresentational contents. Neurosemantics thusinvolves issues of common concern between thephilosophy of neuroscience and philosophy ofmind. I discuss a problem that arises foraccounts of representational content that Icall ``the economy problem'': the problem ofshowing that a candidate theory of mentalrepresentation can bear the work requiredwithin in the causal economy of a mind and (...) anorganism. My approach in the current paper isto explore this and other key themes inneurosemantics through the use of computermodels of neural networks embodied and evolvedin virtual organisms. The models allow for thelaying bare of the causal economies of entireyet simple artificial organisms so that therelations between the neural bases of, forinstance, representation in perception andmemory can be regarded in the context of anentire organism. On the basis of thesesimulations, I argue for an account ofneurosemantics adequate for the solution of theeconomy problem. (shrink)

The neurophilosophy of consciousness brings neuroscience to bear on philosophical issues concerning phenomenal consciousness, especially issues concerning what makes mental states conscious, what it is that we are conscious of, and the nature of the phenomenal character of conscious states. Here attention is given largely to phenomenal consciousness as it arises in vision. The relevant neuroscience concerns not only neurophysiological and neuroanatomical data, but also computational models of neural networks. The neurophilosophical theories that bring such data to bear on the (...) core philosophical issues of phenomenal conscious construe consciousness largely in terms of representations in neural networks associated with certain processes of attention and memory. (shrink)

The philosophical technical term "supervenience" is frequently used in the philosophy of mind as a concise way of characterizing the core idea of physicalism in a manner that is neutral with respect to debates between reductive physicalists and nonreductive physicalists. I argue against this alleged neutrality and side with reductive physicalists. I am especially interested here in debates between psychoneural reductionists and nonreductive functionalist physicalists. Central to my arguments will be considerations concerning how best to articulate the spirit of the (...) idea of supervenience. I argue for a version of supervenience, "fine-grained supervenience," which is the claim that if, at a given time, a single entity instantiates two distinct mental properties, it must do so in virtue of instantiating two distinct physical properties. I argue further that despite initial appearances to the contrary, such a construal of supervenience can be embraced only by reductive physicalists. (shrink)

I have laid out what seem to me to be the most promising arguments on opposing sides of the question of whether what humans regard as the first-person accessible aspects of pain could also be implemented in robots. I have emphasized the ways in which the thought experiments in the respective arguments attempt to marshal hypothetical first- person accessible evidence concerning how one’s own mental life appears to oneself. In the Chinese room argument, a crucial premise involves the thesis that (...) from a lack of it seeming that one is in pain, one can conclude that one is not in pain. There’s a counterpart thesis playing a crucial role in the prosthetic neurons argument, one asserting an entailment from its seeming that one is in pain to one’s being in pain. I further suggested that by adopting a HOT theory of consciousness, of the sort reviewed in Pereplyotchik’s chapter in the present volume, one is thereby in a better position to endorse the prosthetic neurons argument over the Chinese room argument than to make the opposite appraisal. (shrink)

Is the Introspection Thesis true? It certainly isn’t obvious. Introspection is the faculty by which each of us has access to his or her own mental states. Even if we were to suppose that mental states are identical to brain states, it doesn’t follow immediately from this supposition that we can introspect our mental states as brain states. This point is analogous to the following. It doesn’t follow immediately from the mere fact that some distant object is identical to a (...) horse that we can perceive it as a horse. Further, it isn’t obvious that any amount of education would suffice to make some distant speck on the horizon seem like a horse. It may very well be the case that no matter how well we know that some distant speck is a horse; as long as we are sufficiently distant from it we will only be able to see it as a speck. Analogously then, it may very well be the case that no matter how well we know that our mental states are brain states, we will only be able to introspect them as irreducibly mental. (shrink)

The most promising approaches to understanding phenomenal consciousness are what I’ll call cognitive approaches, the most notable exemplars of which are the theories of consciousness articulated by David Rosenthal and Daniel Dennett. The aim of the present contribution is to review the core similarities and differences of these exemplars, as well as to outline the main strengths and remaining challenges to this general sort of approach.

Within the (Haskell Curry) notion of a formal system we complete Tarski's formal correctness: ∀x True(x) ↔ ⊢ x and use this finally formalized notion of Truth to refute his own Undefinability Theorem (based on the Liar Paradox), the Liar Paradox, and the (Panu Raatikainen) essence of the conclusion of the 1931 Incompleteness Theorem.

The Infectious Disease Ontology (IDO) is a suite of interoperable ontology modules that aims to provide coverage of all aspects of the infectious disease domain, including biomedical research, clinical care, and public health. IDO Core is designed to be a disease and pathogen neutral ontology, covering just those types of entities and relations that are relevant to infectious diseases generally. IDO Core is then extended by a collection of ontology modules focusing on specific diseases and pathogens. In this paper we (...) present applications of IDO Core within various areas of infectious disease research, together with an overview of all IDO extension ontologies and the methodology on the basis of which they are built. We also survey recent developments involving IDO, including the creation of IDO Virus; the Coronaviruses Infectious Disease Ontology (CIDO); and an extension of CIDO focused on COVID-19 (IDO-CovID-19).We also discuss how these ontologies might assist in information-driven efforts to deal with the ongoing COVID-19 pandemic, to accelerate data discovery in the early stages of future pandemics, and to promote reproducibility of infectious disease research. (shrink)

Though the following problem is not explicitly raised by her, it seems sufficiently similar to an issue of pertinence to Akins's "Black and White and Color" (this volume) to merit the moniker, Akins's Problem : Can there be a visual experience devoid of both color phenomenology and black-and-white phenomenology? The point of the present paper is to draw from Akins's paper the materials needed to sketch a case for a positive answer to Akins's Problem. I am unsure about how much (...) of what follows Akins will want to endorse, but I hope this helps move us forward in our collective pursuit of a theory of visual consciousness. (shrink)

Many philosophical issues concern questions of objectivity and subjectivity. Of these questions, there are two kinds. The first considers whether something is objective or subjective; the second what it _means_ for something to be objective or subjective.

Numerous studies of the beliefs of people with anorexia nervosa (AN) suggest that a subset of such individuals may experience delusions. We first describe what makes a belief delusional and conclude that such characteristics can be appropriately applied to some beliefs of people with AN. Next, we outline how delusional beliefs may relate to the broader psychopathological process in AN, including: (1) they may be epiphenomenal; (2) they may be an initial partial cause of AN; (3) they may be caused (...) by aspects of AN; or (4) they may be sustaining causes, possibly involved in reciprocal causal relations with aspects of AN. We argue that there is good reason to believe that delusional beliefs of people with AN are not merely epiphenomenal, but rather that they’re causally connected to AN. Because of this, empirical studies can be designed to test for the presence of causal relations. We describe how these studies should be designed. The results of such studies have important implications for understanding the experience of individuals with AN and for the treatment of AN. We outline these implications. (shrink)

In a recent study, we found a negative association between psychopathy and violence against genetic relatives. We interpreted this result as a form of nepotism and argued that it failed to support the hypothesis that psychopathy is a mental disorder, suggesting instead that it supports the hypothesis that psychopathy is an evolved life history strategy. This interpretation and subsequent arguments have been challenged in a number of ways. Here, we identify several misunderstandings regarding the harmful dysfunction definition of mental disorder (...) as it applies to psychopathy and regarding the meaning of nepotism. Furthermore, we examine the evidence provided by our critics that psychopathy is associated with other disorders, and we offer a comment on their alternative model of psychopathy. We conclude that there remains little evidence that psychopathy is the product of dysfunctional mechanisms. (shrink)

A repository of clinically associated Staphylococcus aureus (Sa) isolates is used to semi‐automatically generate a set of application ontologies for specific subfamilies of Sa‐related disease. Each such application ontology is compatible with the Infectious Disease Ontology (IDO) and uses resources from the Open Biomedical Ontology (OBO) Foundry. The set of application ontologies forms a lattice structure beneath the IDO‐Core and IDO‐extension reference ontologies. We show how this lattice can be used to define a strategy for the construction of a new (...) taxonomy of infectious disease incorporating genetic, molecular, and clinical data. We also outline how faceted browsing and query of annotated data is supported using a lattice application ontology. (shrink)

Vaccine research, as well as the development, testing, clinical trials, and commercial uses of vaccines involve complex processes with various biological data that include gene and protein expression, analysis of molecular and cellular interactions, study of tissue and whole body responses, and extensive epidemiological modeling. Although many data resources are available to meet different aspects of vaccine needs, it remains a challenge how we are to standardize vaccine annotation, integrate data about varied vaccine types and resources, and support advanced vaccine (...) data analysis and inference. To address these problems, the community-based Vaccine Ontology (VO) has been developed through collaboration with vaccine researchers and many national and international centers and programs, including the National Center for Biomedical Ontology (NCBO), the Infectious Disease Ontology (IDO) Initiative, and the Ontology for Biomedical Investigations (OBI). VO utilizes the Basic Formal Ontology (BFO) as the top ontology and the Relation Ontology (RO) for definition of term relationships. VO is represented in the Web Ontology Language (OWL) and edited using the Protégé-OWL. Currently VO contains more than 2000 terms and relationships. VO emphasizes on classification of vaccines and vaccine components, vaccine quality and phenotypes, and host immune response to vaccines. These reflect different aspects of vaccine composition and biology and can thus be used to model individual vaccines. More than 200 licensed vaccines and many vaccine candidates in research or clinical trials have been modeled in VO. VO is being used for vaccine literature mining through collaboration with the National Center for Integrative Biomedical Informatics (NCIBI). Multiple VO applications will be presented. (shrink)

An accurate classification of bacteria is essential for the proper identification of patient infections and subsequent treatment decisions. Multi-Locus Sequence Typing (MLST) is a genetic technique for bacterial classification. MLST classifications are used to cluster bacteria into clonal complexes. Importantly, clonal complexes can serve as a biological species concept for bacteria, facilitating an otherwise difficult taxonomic classification. In this paper, we argue for the inclusion of terms relating to clonal complexes in biomedical ontologies.

Broadening access to both computational and educational resources is crit- ical to diffusing machine learning (ML) innovation. However, today, most ML resources and experts are siloed in a few countries and organizations. In this article, we describe our pedagogical approach to increasing access to applied ML through a massive open online course (MOOC) on Tiny Machine Learning (TinyML). We suggest that TinyML, applied ML on resource-constrained embedded devices, is an attractive means to widen access because TinyML leverages low-cost and globally (...) accessible hardware and encourages the development of complete, self-contained applications, from data collection to deployment. To this end, a collaboration between academia and industry produced a four part MOOC that provides application-oriented instruction on how to develop solutions using TinyML. The series is openly available on the edX MOOC platform, has no prerequisites beyond basic programming, and is designed for global learners from a variety of backgrounds. It introduces real-world applications, ML algorithms, data-set engineering, and the ethi- cal considerations of these technologies through hands-on programming and deployment of TinyML applications in both the cloud and on their own microcontrollers. To facili- tate continued learning, community building, and collaboration beyond the courses, we launched a standalone website, a forum, a chat, and an optional course-project com- petition. We also open-sourced the course materials, hoping they will inspire the next generation of ML practitioners and educators and further broaden access to cutting-edge ML technologies. (shrink)

This article is about a very important metaphysical concept, macrocosm/microcosm and its appearance in Doric thought which in turn influenced Socrates and Plato. But since this concept has been gainsaid and negated in recent articles and distorted by some ancient thinkers it will be necessary to conduct reconstructive surgery to restore it to its pristine condition. Hopefully, this paper will illustrate how metaphysics is done with the use of the Mind's eye, in the reading of reality that was part and (...) parcel of the Greek mind but also in understanding the ancient Greeks themselves and their culture especially in the creation of the classical republican form of government. This account will discuss what macrocosm/microcosm is, its part in the Cosmos and hence its centrality in the Natural Law and in philosophy (wisdom). Second, it will prove the concept thru another natural law principle, righteousness. Third, point out it's provenance in Doric thought. In a corollary, it points to what the impact macrocosm/microcosm has on the true meaning "to be a lover of wisdom" and its importance in the concept of theosis. More than a research/academic article, this paper is also an exposition in which it will attempt to demonstrate the use and the mechanics of this principle by using a saying of Homer and the tripartite paradigm of the family. (shrink)

This paper addresses a family of issues surrounding the biological phenomenon of resistance and its representation in realist ontologies. The treatments of resistance terms in various existing ontologies are examined and found to be either overly narrow, internally inconsistent, or otherwise problematic. We propose a more coherent characterization of resistance in terms of what we shall call blocking dispositions, which are collections of mutually coordinated dispositions which are of such a sort that they cannot undergo simultaneous realization within a single (...) bearer. A definition of ‘protective resistance’ is proposed for use in the Infectious Disease Ontology (IDO) and we show how this definition can be used to characterize the antibiotic resistance in Methicillin-Resistant Staphylococcus aureus (MRSA). The ontological relations between entities in our MRSA case study are used alongside a series of logical inference rules to illustrate logical reasoning about resistance. A description logic representation of blocking dispositions is also provided. We demonstrate that our characterization of resistance is sufficiently general to cover two other cases of resistance in the infectious disease domain involving HIV and malaria. (shrink)

The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Rapid, accurate, and consistent interpretation of generated data is thereby of fundamental concern. Ontologies––structured, controlled, vocabularies––are designed to support consistency of interpretation, and thereby to prevent the development of data silos. This paper describes how ontologies are serving this purpose in the COVID-19 research domain, by following principles of the Open Biological and Biomedical Ontology (OBO) Foundry and by reusing existing ontologies such as the Infectious Disease Ontology (...) (IDO) Core, which provides terminological content common to investigations of all infectious diseases. We report here on the development of an IDO extension, the Virus Infectious Disease Ontology (VIDO), a reference ontology covering viral infectious diseases. We motivate term and definition choices, showcase reuse of terms from existing OBO ontologies, illustrate how ontological decisions were motivated by relevant life science research, and connect VIDO to the Coronavirus Infectious Disease Ontology (CIDO). We next use terms from these ontologies to annotate selections from life science research on SARS-CoV-2, highlighting how ontologies employing a common upper-level vocabulary may be seamlessly interwoven. Finally, we outline future work, including bacteria and fungus infectious disease reference ontologies currently under development, then cite uses of VIDO and CIDO in host-pathogen data analytics, electronic health record annotation, and ontology conflict-resolution projects. (shrink)

This paper addresses the use of dispositions in the Infectious Disease Ontology (IDO). IDO is an ontology constructed according to the principles of the Open Biomedical Ontology (OBO) Foundry and uses the Basic Formal Ontology (BFO) as an upper ontology. After providing a brief introduction to disposition types in BFO and IDO, we discuss three general techniques for representing combinations of dispositions under the headings blocking dispositions, complementary dispositions, and collective dispositions. Motivating examples for each combination of dispositions is given (...) along with a specific use case in IDO. Description logic restrictions are used to formalize statements relating to these combinations. (shrink)

The Cell Ontology (CL) is designed to provide a standardized representation of cell types for data annotation. Currently, the CL employs multiple is_a relations, defining cell types in terms of histological, functional, and lineage properties, and the majority of definitions are written with sufficient generality to hold across multiple species. This approach limits the CL’s utility for cross-species data integration. To address this problem, we developed a method for the ontological representation of cells and applied this method to develop a (...) dendritic cell ontology (DC-CL). DC-CL subtypes are delineated on the basis of surface protein expression, systematically including both species-general and species-specific types and optimizing DC-CL for the analysis of flow cytometry data. This approach brings benefits in the form of increased accuracy, support for reasoning, and interoperability with other ontology resources. 104. Barry Smith, “Toward a Realistic Science of Environments”, Ecological Psychology, 2009, 21 (2), April-June, 121-130. Abstract: The perceptual psychologist J. J. Gibson embraces a radically externalistic view of mind and action. We have, for Gibson, not a Cartesian mind or soul, with its interior theater of contents and the consequent problem of explaining how this mind or soul and its psychological environment can succeed in grasping physical objects external to itself. Rather, we have a perceiving, acting organism, whose perceptions and actions are always already tuned to the parts and moments, the things and surfaces, of its external environment. We describe how on this basis Gibson sought to develop a realist science of environments which will be ‘consistent with physics, mechanics, optics, acoustics, and chemistry’. (shrink)

The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Ontologies – structured, controlled, vocabularies – are designed to support consistency of interpretation, and thereby to prevent the development of data silos. This paper describes how ontologies are serving this purpose in the virus research domain, following the principles of the Open Biological and Biomedical Ontology (OBO) Foundry and drawing on the resources of the Infectious Disease Ontology (IDO) Core. We report the development of the Virus Infectious (...) Disease Ontology (VIDO), a reference ontology extending IDO Core covering viral infectious diseases. We examine newly minted terms, showcase ontology term reuse, and illustrate the use of VIDO by annotating selections from recent life science research on SAR-CoV-2, in the interest of supporting machine learning projects. (shrink)

The Center for Disease Control and Prevention’s Active Bacterial Core Surveillance (CDC ABCs) Program is a collaborative effort betweeen the CDC, state health departments, laboratories, and universities to track invasive bacterial pathogens of particular importance to public health [1]. The year-end surveillance reports produced by this program help to shape public policy and coordinate responses to emerging infectious diseases over time. The ABCs case report form (CRF) data represents an excellent opportunity for data reuse beyond the original surveillance purposes.

We explicate representational content by addressing how representations that ex- plain intelligent behavior might be acquired through processes of Darwinian evo- lution. We present the results of computer simulations of evolved neural network controllers and discuss the similarity of the simulations to real-world examples of neural network control of animal behavior. We argue that focusing on the simplest cases of evolved intelligent behavior, in both simulated and real organisms, reveals that evolved representations must carry information about the creature’s environ- ments (...) and further can do so only if their neural states are appropriately isomor- phic to environmental states. Further, these informational and isomorphism rela- tions are what are tracked by content attributions in folk-psychological and cognitive scientific explanations of these intelligent behaviors. (shrink)