Results for 'Mark Musen'

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  1. Towards Interoperability of Biomedical Ontologies.Musen Mark, A. Schroeder, Michael Smith & Barry - 2008 - Schloss Dagstuhl: Leibniz-Zentrum für Informatik.
    Report on Dagstuhl Seminar 07132, Schloss Dagstuhl, March 27-30 , 2007.
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  2. The National Center for Biomedical Ontology.Mark A. Musen, Natalya F. Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne Story & Barry Smith - 2012 - Journal of the American Medical Informatics Association 19 (2):190-195.
    The National Center for Biomedical Ontology is now in its seventh year. The goals of this National Center for Biomedical Computing are to: create and maintain a repository of biomedical ontologies and terminologies; build tools and web services to enable the use of ontologies and terminologies in clinical and translational research; educate their trainees and the scientific community broadly about biomedical ontology and ontology-based technology and best practices; and collaborate with a variety of groups who develop and use ontologies and (...)
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  3. Towards Interoperability of Biomedical Ontologies - Report Number 07132.Mark Musen, Michael Schroeder & Barry Smith - 2008 - In Musen Mark, A. Schroeder, Michael Smith & Barry (eds.), Towards Interoperability of Biomedical Ontologies. Schloss Dagstuhl: Leibniz-Zentrum für Informatik.
    The meeting focused on uses of ontologies, with a special focus on spatial ontologies, in addressing the ever increasing needs faced by biology and medicine to cope with ever expanding quantities of data. To provide effective solutions computers need to integrate data deriving from myriad heterogeneous sources by bringing the data together within a single framework. The meeting brought together leaders in the field of what are called "top-level ontologies" to address this issue, and to establish strategies among leaders in (...)
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  4. Applied ontology: Focusing on content.Nicola Guarino & Mark A. Musen - 2005 - Applied ontology 1 (1):1-5.
    In a world that is overflowing with journals and other outlets for scientific publication, the appearance of any new periodical requires some justification. There are already more journals than we can read and more conferences than we can attend. In the case of applied Ontology, we believe that the creation of anew journal not only is completely justifiable, it is downright exciting. For too long, workers in computer science have assumed that content comes for free. “Theory” in computer science has (...)
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  5. Ten years of Applied Ontology.Nicola Guarino & Mark A. Musen - 2015 - Applied ontology 10 (3-4):169-170.
    This is a short editorial to introduce the double issue of Applied Ontology that celebrates the journal's tenth anniversary. At a time when information technology of all kinds depends on the use of explicit ontologies, our journal addresses the modeling issues that underlie the next generation of computational systems. As the editors of Applied Ontology, we are excited by how far we have come in the past decade and by the opportunities that await our research community.
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  6. Ontology Summit 2008 Communiqué: Towards an open ontology repository.Leo Obrst, Mark Musen, Barry Smith, Fabian Neuhaus, Frank Olken, Mike Gruninger, M. Raymond, Patrick Hayes & Raj Sharma - 2008 - In Leo Obrst, Mark Musen, Barry Smith, Fabian Neuhaus, Frank Olken, Mike Gruninger, M. Raymond, Patrick Hayes & Raj Sharma (eds.), Ontology Summit 2008 Communiqué: Towards an open ontology repository. cim3. net.
    Each annual Ontology Summit initiative makes a statement appropriate to each Summit’s theme as part of our general advocacy designed to bring ontology science and engineering into the mainstream. The theme this year is "Towards an Open Ontology Repository". This communiqué represents the joint position of those who were engaged in the year's summit discourse on an Open Ontology Repository (OOR) and of those who endorse below. In this discussion, we have agreed that an "ontology repository is a facility where (...)
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  7. ARGOS policy brief on semantic interoperability.Dipak Kalra, Mark Musen, Barry Smith & Werner Ceusters - 2011 - Studies in Health Technology and Informatics 170 (1):1-15.
    Semantic interoperability requires the use of standards, not only for Electronic Health Record (EHR) data to be transferred and structurally mapped into a receiving repository, but also for the clinical content of the EHR to be interpreted in conformity with the original meanings intended by its authors. Accurate and complete clinical documentation, faithful to the patient’s situation, and interoperability between systems, require widespread and dependable access to published and maintained collections of coherent and quality-assured semantic resources, including models such as (...)
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  8. Bioportal: Ontologies and integrated data resources at the click of the mouse.L. Whetzel Patricia, H. Shah Nigam, F. Noy Natalya, Dai Benjamin, Dorf Michael, Griffith Nicholas, Jonquet Clement, Youn Cherie, Callendar Chris, Coulet Adrien, Barry Smith, Chris Chute & Mark Musen - 2011 - In Whetzel Patricia L., Shah Nigam H., Noy Natalya F., Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Cherie Youn, Chris Callendar, Adrien Coulet, Smith Barry, Chute Chris & Musen Mark (eds.), Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY. pp. 292-293.
    BioPortal is a Web portal that provides access to a library of biomedical ontologies and terminologies developed in OWL, RDF(S), OBO format, Protégé frames, and Rich Release Format. BioPortal functionality, driven by a service-oriented architecture, includes the ability to browse, search and visualize ontologies (Figure 1). The Web interface also facilitates community-based participation in the evaluation and evolution of ontology content.
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  9. Doxastic Voluntarism.Mark Boespflug & Elizabeth Jackson - forthcoming - Stanford Encyclopedia of Philosophy.
    Doxastic voluntarism is the thesis that our beliefs are subject to voluntary control. While there’s some controversy as to what “voluntary control” amounts to (see 1.2), it’s often understood as direct control: the ability to bring about a state of affairs “just like that,” without having to do anything else. Most of us have direct control over, for instance, bringing to mind an image of a pine tree. Can one, in like fashion, voluntarily bring it about that one believes a (...)
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  10. (A Little) Quantified Modal Logic for Normativists.Mark Povich - forthcoming - Analysis.
    Burgess (1997), building on Quine (1953), convincingly argued that claims in quantified modal logic cannot be understood as synonymous with or logically equivalent to claims about the analyticity of certain sentences. According to modal normativism, metaphysically necessary claims instead express or convey our actual semantic rules. In this paper, I show how the normativist can use Sidelle’s (1992a, 1995) neglected work on rigidity to account for two important phenomena in quantified modal logic: the necessity of identity and the substitutivity of (...)
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  11. Prospects for a Quietist Moral Realism.Mark Warren & Amie Thomasson - 2023 - In Paul Bloomfield & David Copp (eds.), Oxford Handbook of Moral Realism. New York, NY: Oxford University Press. pp. 526-53.
    Quietist Moral Realists accept that there are moral facts and properties, while aiming to avoid many of the explanatory burdens thought to fall on traditional moral realists. This chapter examines the forms that Quietist Moral Realism has taken and the challenges it has faced, in order to better assess its prospects. The best hope, this chapter argues, lies in a pragmatist approach that distinguishes the different functions of diverse areas of discourse. This paves the way for a form of Quietism (...)
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  12. The Selected Writings of Mark Pettinelli.Mark Pettinelli - manuscript
    The best writing of Mark Pettinelli, about cognitive psychology, cognitive science, etc.
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  13. Filipino Students’ Reading Abilities: A Note on the Challenges and Potential Areas for Improvement.Mark Vergel Idulog, Ronald Gadiano, Edmon Toledo, Melanie Hermosada, Hazel Casaldon, Marianne Mariposa, Christie Geron, Elena Dequito, Jeromea Genanda, Mark Anthony Malipot, Jupeth Pentang & Ronalyn Bautista - 2023 - International Journal of Education and Teaching Zone 2 (2):233-242.
    The reading abilities of Filipino students have been a challenge for educators and policymakers alike. Despite government efforts to improve literacy rates in the Philippines, recent studies have shown that many students need help with reading comprehension, vocabulary development, and critical thinking skills. This research note examines the current state of reading abilities among Filipino students and potential areas for improvement. The poor reading abilities can be attributed to several factors, including a lack of resources and socioeconomic factors. However, there (...)
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  14. Breaking Silence: The Quality of Life, Experiences, and Challenges of Balik Aral Grade 12 Students (17th edition).Mark Anthony Polinar - 2024 - Psychology and Education: A Multidisciplinary Journal 17 (7):710-719.
    The growth of individuals and society heavily relies on education. Certain hindrances may prompt some students to halt their academic pursuits temporarily. This is known as "Balik-aral." The exploration of the quality of life, lived experiences, and challenges of grade 12 Balik-aral students was undertaken by the authors to break their silence and help them by developing recommendations that could be presented to the school's key stakeholders. A phenomenological approach was used to understand the phenomenon in a study involving five (...)
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  15. The Philosophical Work of Mark Sharlow: an Introduction and Guide.Mark F. Sharlow - manuscript
    Provides an overview of Mark Sharlow's philosophical work with summaries of his positions. Includes references and links to his writings.
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  16. Imagining the Past of the Present.Mark Windsor - forthcoming - Philosophical Quarterly.
    Some objects we value because they afford a felt connection with people, events, or places connected with their past. Visiting Canterbury cathedral, you encounter the place where, in 1170, Archbishop Thomas Becket was murdered by four knights of Henry II. Knowing that you are standing in the very place where Becket’s blood was spilled gives the past event a sense of tangible reality. One feels ‘in touch with’ the past; history seems to ‘come alive’. In this paper, I propose an (...)
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  17. Inconsistent multiple testing corrections: The fallacy of using family-based error rates to make inferences about individual hypotheses.Mark Rubin - 2024 - Methods in Psychology 10.
    During multiple testing, researchers often adjust their alpha level to control the familywise error rate for a statistical inference about a joint union alternative hypothesis (e.g., “H1,1 or H1,2”). However, in some cases, they do not make this inference. Instead, they make separate inferences about each of the individual hypotheses that comprise the joint hypothesis (e.g., H1,1 and H1,2). For example, a researcher might use a Bonferroni correction to adjust their alpha level from the conventional level of 0.050 to 0.025 (...)
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  18. Having reasons.Mark Schroeder - 2008 - Philosophical Studies 139 (1):57 - 71.
    What is it to have a reason? According to one common idea, the "Factoring Account", you have a reason to do A when there is a reason for you to do A which you have--which is somehow in your possession or grasp. In this paper, I argue that this common idea is false. But though my arguments are based on the practical case, the implications of this are likely to be greatest in epistemology: for the pitfalls we fall into when (...)
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  19. Belief in Truthmaker Semantics.Mark Jago - forthcoming - Synthese.
    Stephen Yablo has argued that ascriptions of belief and knowledge are sensitive to subject matter and that theorising in such terms may help resolve philosophical questions about the semantics of such ascriptions. Truthmaker semantics offers a way of theorising about subject matters. My main aim in this paper is to investigate what a semantics for knowledge or belief ascriptions might look like within truthmaker semantics. I then discuss what the resulting account might have to say about the problem of logical (...)
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  20. The scope of instrumental reason.Mark Schroeder - 2004 - Philosophical Perspectives 18 (1):337–364.
    Allow me to rehearse a familiar scenario. We all know that which ends you have has something to do with what you ought to do. If Ronnie is keen on dancing but Bradley can’t stand it, then the fact that there will be dancing at the party tonight affects what Ronnie and Bradley ought to do in different ways. In short, (HI) you ought, if you have the end, to take the means. But now trouble looms: what if you have (...)
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  21. Type I error rates are not usually inflated.Mark Rubin - 2021
    The inflation of Type I error rates is thought to be one of the causes of the replication crisis. Questionable research practices such as p-hacking are thought to inflate Type I error rates above their nominal level, leading to unexpectedly high levels of false positives in the literature and, consequently, unexpectedly low replication rates. In this article, I offer an alternative view. I argue that questionable and other research practices do not usually inflate relevant Type I error rates. I begin (...)
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  22. Tempered expressivism.Mark Schroeder - 2013 - Oxford Studies in Metaethics (1).
    The basic idea of expressivism is that for some sentences ‘P’, believing that P is not just a matter of having an ordinary descriptive belief. This is a way of capturing the idea that the meaning of some sentences either exceeds their factual/descriptive content or doesn’t consist in any particular factual/descriptive content at all, even in context. The paradigmatic application for expressivism is within metaethics, and holds that believing that stealing is wrong involves having some kind of desire-like attitude, with (...)
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  23. Moral imagination: implications of cognitive science for ethics.Mark Johnson - 1993 - Chicago: University of Chicago Press.
    Using path-breaking discoveries of cognitive science, Mark Johnson argues that humans are fundamentally imaginative moral animals, challenging the view that morality is simply a system of universal laws dictated by reason. According to the Western moral tradition, we make ethical decisions by applying universal laws to concrete situations. But Johnson shows how research in cognitive science undermines this view and reveals that imagination has an essential role in ethical deliberation. Expanding his innovative studies of human reason in Metaphors We (...)
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  24. Linnebo on Analyticity and Thin Existence.Mark Povich - forthcoming - Philosophia Mathematica.
    In his groundbreaking book, Thin Objects, Linnebo (2018) argues for an account of neo-Fregean abstraction principles and thin existence that does not rely on analyticity or conceptual rules. It instead relies on a metaphysical notion he calls “sufficiency”. In this short discussion, I defend the analytic or conceptual rule account of thin existence.
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  25. The Unfinishable Scroll and Beyond: Mark Sharlow's Blogs, July 2008 to March 2011.Mark F. Sharlow - manuscript
    An archive of Mark Sharlow's two blogs, "The Unfinishable Scroll" and "Religion: the Next Version." Covers Sharlow's views on metaphysics, epistemology, mind, science, religion, and politics. Includes topics and ideas not found in his papers.
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  26. Authorial Freedom.Mark Schroeder - forthcoming - In Berislav Marušić & Mark Schroeder (eds.), Analytic Existentialism. Oxford University Press.
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  27. Research Notes of Mark Pettinelli.Mark Pettinelli - manuscript
    Research notes of Mark Pettinelli about cognitive science, cognitive psychology.
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  28.  82
    Persons as Things.Mark Schroeder - 2019 - Oxford Studies in Normative Ethics 9:95-115.
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  29. Getting Perspective on Objective Reasons.Mark Schroeder - 2018 - Ethics 128 (2):289-319.
    This article considers two important problems for the idea that what we ought to do is determined by the balance of competing reasons. The problems are distinct, but the object of the article is to explore how they admit of a single solution. It is a consequence of this solution that objective reasons—facts that count in favor—are in an important sense less objective than they have consistently been assumed to be. This raises but does not answer the question as to (...)
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  30. Are Kinetic and Temporal Continuities Real for Aristotle?Mark Sentesy - 2024 - History of Philosophy & Logical Analysis 26 (2):275-302.
    Aristotle argues that time depends on soul to count it, but adds that motion, which makes time what it is, may be independent of soul. The claim that time depends on soul or mind implies that there is at least one measurable property of natural beings that exists because of the mind’s activity. This paper argues that for Aristotle time depends partly on soul, but more importantly on motion, which defines a continuum. This argument offers a robust metaphysics of time. (...)
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  31. The Collected Works of Mark Rozen Pettinelli [2006-2015].Mark Pettinelli - manuscript
    This collection of articles is almost all of the psychological writings of Mark Pettinelli.
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  32. The libertarian argument for reparations.Mark R. Reiff - 2024 - Journal of Social Philosophy:1-30.
    The case for reparations for grievous acts of historical injustice has been getting a lot of attention lately. But I aim to broaden the discussion in two ways. First, I am not only going to talk about reparations as a means of rectifying the injuries inflicted by slavery and the genocide of indigenous peoples, the theft of their land, and the ongoing ripple effects of these historic wrongs. I am also going to talk about reparations for a wider variety of (...)
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  33.  85
    Humean Vice Epistemology: The Case of Prejudice.Mark Collier - 2025 - In Scott Stapleford & Verena Wagner (eds.), Hume and contemporary epistemology. New York, NY: Routledge.
    Hume argues that we succumb to the vice of prejudice when we fail to correct negative generalizations about social groups in the face of counter-evidence. We are blameworthy for these biases, moreover, even if they are unavoidable. Hume’s theory of doxastic responsibility entails that his own racial prejudices are deserving of condemnation. In contrast, contemporary vice epistemologists are more inclined to absolve agents of culpability for prejudices beyond their control.
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  34. Mental Notes of Mark Pettinelli.Mark Pettinelli - manuscript
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  35. Modality and constitution in distinctively mathematical explanations.Mark Povich - 2020 - European Journal for Philosophy of Science 10 (3):1-10.
    Lange argues that some natural phenomena can be explained by appeal to mathematical, rather than natural, facts. In these “distinctively mathematical” explanations, the core explanatory facts are either modally stronger than facts about ordinary causal law or understood to be constitutive of the physical task or arrangement at issue. Craver and Povich argue that Lange’s account of DME fails to exclude certain “reversals”. Lange has replied that his account can avoid these directionality charges. Specifically, Lange argues that in legitimate DMEs, (...)
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  36. Weighting for a plausible Humean theory of reasons.Mark Schroeder - 2007 - Noûs 41 (1):110–132.
    This paper addresses the two extensional objections to the Humean Theory of Reasons—that it allows for too many reasons, and that it allows for too few. Although I won’t argue so here, manyof the other objections to the Humean Theoryof Reasons turn on assuming that it cannot successfully deal with these two objections.1 What I will argue, is that the force of the too many and the too few objections to the Humean Theorydepend on whether we assume that Humeans are (...)
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  37.  71
    Keepsakes.Mark Windsor - 2024 - In Tobias Becker & Dylan Trigg (eds.), The Routledge Handbook of Nostalgia. Routledge.
    Keepsakes are nostalgic objects par excellence. We value keepsakes because they prompt nostalgic memories of the past. But perhaps more importantly, we also value them because they afford a feeling of contact with that which they remind us of. Drawing on work in philosophy and psychology, this chapter aims to give an account of the nature and value of keepsakes as nostalgic objects. Keepsakes, it argues, are objects that bear a material continuity with some person, event, or place from one’s (...)
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  38. A Conventionalist Account of Distinctively Mathematical Explanation.Mark Povich - 2023 - Philosophical Problems in Science 74:171–223.
    Distinctively mathematical explanations (DMEs) explain natural phenomena primarily by appeal to mathematical facts. One important question is whether there can be an ontic account of DME. An ontic account of DME would treat the explananda and explanantia of DMEs as ontic structures and the explanatory relation between them as an ontic relation (e.g., Pincock 2015, Povich 2021). Here I present a conventionalist account of DME, defend it against objections, and argue that it should be considered ontic. Notably, if indeed it (...)
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  39. When Beliefs Wrong.Mark Schroeder - 2018 - Philosophical Topics 46 (1):115-127.
    Most philosophers find it puzzling how beliefs could wrong, and this leads them to conclude that they do not. So there is much philosophical work to be done in sorting out whether I am right to say that they do, as well as how this could be so. But in this paper I will take for granted that beliefs can wrong, and ask instead when beliefs wrong. My answer will be that beliefs wrong when they falsely diminish. This answer has (...)
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  40. The Philosophical Beliefs of Humanity: Dogmatism, Relativism, and Skeptical-Dogmatism.Mark Walker - forthcoming - In Mark Walker & Sanford Goldberg (eds.), Philosophy with Attitude. Oxford: Oxford University Press.
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  41. Identifying Virtues and Values Through Obituary Data-Mining.Mark Alfano, Andrew Higgins & Jacob Levernier - 2018 - Journal of Value Inquiry 52 (1).
    Because obituaries are succinct and explicitly intended to summarize their subjects’ lives, they may be expected to include only the features that the author finds most salient but also to signal to others in the community the socially-recognized aspects of the deceased’s character. We begin by reviewing studies 1 and 2, in which obituaries were carefully read and labeled. We then report study 3, which further develops these results with a semi-automated, large-scale semantic analysis of several thousand obituaries. Geography, gender, (...)
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  42.  81
    Perceptual Reasons and Defeat.Mark Schroeder - 2021 - In Jessica Brown & Mona Simion (eds.), Reasons, Justification, and Defeat. Oxford Oxford: Oxford University Press. pp. 269-284.
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  43.  56
    Preregistration Does Not Improve the Transparent Evaluation of Severity in Popper’s Philosophy of Science or When Deviations are Allowed.Mark Rubin - manuscript
    One justification for preregistering research hypotheses, methods, and analyses is that it improves the transparent evaluation of the severity of hypothesis tests. In this article, I consider two cases in which preregistration does not improve this evaluation. First, I argue that, although preregistration can facilitate the transparent evaluation of severity in Mayo’s error statistical philosophy of science, it does not facilitate this evaluation in Popper’s theory-centric approach. To illustrate, I show that associated concerns about Type I error rate inflation are (...)
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  44. Mechanisms and Model-Based Functional Magnetic Resonance Imaging.Mark Povich - 2015 - Philosophy of Science 82 (5):1035-1046.
    Mechanistic explanations satisfy widely held norms of explanation: the ability to manipulate and answer counterfactual questions about the explanandum phenomenon. A currently debated issue is whether any nonmechanistic explanations can satisfy these explanatory norms. Weiskopf argues that the models of object recognition and categorization, JIM, SUSTAIN, and ALCOVE, are not mechanistic yet satisfy these norms of explanation. In this article I argue that these models are mechanism sketches. My argument applies recent research using model-based functional magnetic resonance imaging, a novel (...)
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  45. The Narrow Ontic Counterfactual Account of Distinctively Mathematical Explanation.Mark Povich - 2021 - British Journal for the Philosophy of Science 72 (2):511-543.
    An account of distinctively mathematical explanation (DME) should satisfy three desiderata: it should account for the modal import of some DMEs; it should distinguish uses of mathematics in explanation that are distinctively mathematical from those that are not (Baron [2016]); and it should also account for the directionality of DMEs (Craver and Povich [2017]). Baron’s (forthcoming) deductive-mathematical account, because it is modelled on the deductive-nomological account, is unlikely to satisfy these desiderata. I provide a counterfactual account of DME, the Narrow (...)
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  46. (1 other version)Knowledge Is Belief For Sufficient (Objective and Subjective) Reason.Mark Schroeder - 2015 - Oxford Studies in Epistemology 5.
    This chapter lays out a case that with the proper perspective on the place of epistemology within normative inquiry more generally, it is possible to appreciate what was on the right track about some of the early approaches to the analysis of knowledge, and to improve on the obvious failures which led them to be rejected. Drawing on more general principles about reasons, their weight, and their relationship to justification, it offers answers to problems about defeat and the conditional fallacy (...)
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  47. The hypothetical imperative?Mark Schroeder - 2005 - Australasian Journal of Philosophy 83 (3):357 – 372.
    According to the standard view, Kant held that hypothetical imperatives are universally binding edicts with disjunctive objects: take-the-means-or-don't-have-the-end. But Kant thought otherwise. He held that they are edicts binding only on some - those who have an end.
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  48. (1 other version)Technologically scaffolded atypical cognition: The case of YouTube’s recommender system.Mark Alfano, Amir Ebrahimi Fard, J. Adam Carter, Peter Clutton & Colin Klein - 2020 - Synthese (1-2):1-24.
    YouTube has been implicated in the transformation of users into extremists and conspiracy theorists. The alleged mechanism for this radicalizing process is YouTube’s recommender system, which is optimized to amplify and promote clips that users are likely to watch through to the end. YouTube optimizes for watch-through for economic reasons: people who watch a video through to the end are likely to then watch the next recommended video as well, which means that more advertisements can be served to them. This (...)
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  49. The Costs of HARKing.Mark Rubin - 2022 - British Journal for the Philosophy of Science 73 (2):535-560.
    Kerr coined the term ‘HARKing’ to refer to the practice of ‘hypothesizing after the results are known’. This questionable research practice has received increased attention in recent years because it is thought to have contributed to low replication rates in science. The present article discusses the concept of HARKing from a philosophical standpoint and then undertakes a critical review of Kerr’s twelve potential costs of HARKing. It is argued that these potential costs are either misconceived, misattributed to HARKing, lacking evidence, (...)
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  50. Instrumental mythology.Mark Schroeder - 2005 - Journal of Ethics and Social Philosophy 1 (2):1-13.
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