Results for 'Jim Leebens-Mack'

102 found
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  1. Promoting Coherent Minimum Reporting Guidelines for Biological and Biomedical Investigations: The MIBBI Project.Chris F. Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A. Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R. Brinkman, Adam Michael Clark, Eric W. Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Tanya Gray, Graeme Grimes, John M. Hancock, Nigel W. Hardy, Henning Hermjakob, Randall K. Julian, Matthew Kane, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas Le Novere, Jim Leebens-Mack, Suzanna E. Lewis, Phillip Lord, Ann-Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth McNally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M. Reecy, Donald G. Robertson, Philippe Rocca-Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H. Scheuermann, Daniel Schober, Barry Smith & Jason Snape - 2008 - Nature Biotechnology 26 (8):889-896.
    Throughout the biological and biomedical sciences there is a growing need for, prescriptive ‘minimum information’ (MI) checklists specifying the key information to include when reporting experimental results are beginning to find favor with experimentalists, analysts, publishers and funders alike. Such checklists aim to ensure that methods, data, analyses and results are described to a level sufficient to support the unambiguous interpretation, sophisticated search, reanalysis and experimental corroboration and reuse of data sets, facilitating the extraction of maximum value from data sets (...)
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  2. The Moral Self and Moral Duties.Jim A. C. Everett, Joshua August Skorburg & Julian Savulescu - 2020 - Philosophical Psychology (7):1-22.
    Recent research has begun treating the perennial philosophical question, “what makes a person the same over time?” as an empirical question. A long tradition in philosophy holds that psychological continuity and connectedness of memories are at the heart of personal identity. More recent experimental work, following Strohminger & Nichols (2014), has suggested that persistence of moral character, more than memories, is perceived as essential for personal identity. While there is a growing body of evidence supporting these findings, a critique by (...)
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  3. On Mack on Locke on Property.Peter Vallentyne - 2013 - Liberty Matters.
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  4. Identifying and Individuating Cognitive Systems: A Task-Based Distributed Cognition Alternative to Agent-Based Extended Cognition.Jim Davies & Kourken Michaelian - 2016 - Cognitive Processing 17 (3):307-319.
    This article argues for a task-based approach to identifying and individuating cognitive systems. The agent-based extended cognition approach faces a problem of cognitive bloat and has difficulty accommodating both sub-individual cognitive systems ("scaling down") and some supra-individual cognitive systems ("scaling up"). The standard distributed cognition approach can accommodate a wider variety of supra-individual systems but likewise has difficulties with sub-individual systems and faces the problem of cognitive bloat. We develop a task-based variant of distributed cognition designed to scale up and (...)
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  5. Contextualism and Warranted Assertion.Jim Stone - 2007 - Pacific Philosophical Quarterly 88 (1):92–113.
    Contextualists offer "high-low standards" practical cases to show that a variety of knowledge standards are in play in different ordinary contexts. These cases show nothing of the sort, I maintain. However Keith DeRose gives an ingenious argument that standards for knowledge do go up in high-stakes cases. According to the knowledge account of assertion (Kn), only knowledge warrants assertion. Kn combined with the context sensitivity of assertability yields contextualism about knowledge. But is Kn correct? I offer a rival account of (...)
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  6. Distributed Cognition, Toward a New Foundation for Human-Computer Interaction Research.David Kirsh, Jim Hollan & Edwin Hutchins - 2000 - ACM Transactions on Computer-Human Interaction 7 (2):174-196.
    We are quickly passing through the historical moment when people work in front of a single computer, dominated by a small CRT and focused on tasks involving only local information. Networked computers are becoming ubiquitous and are playing increasingly significant roles in our lives and in the basic infrastructure of science, business, and social interaction. For human-computer interaction o advance in the new millennium we need to better understand the emerging dynamic of interaction in which the focus task is no (...)
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  7.  94
    Why Jim Joyce Wasn’T Wrong: Baseball and the Euthyphro Dilemma.Amber L. Griffioen - 2015 - Journal of the Philosophy of Sport 42 (3):327-348.
    In 2010, pitcher Armando Galarraga was denied a perfect game when umpire Jim Joyce called Jason Donald safe at first with two outs in the bottom of the 9th. In the numerous media discussions that followed, Joyce’s ‘blown’ call was commonly referred to as ‘mistaken’, ‘wrong’, or otherwise erroneous. However, this use of language makes some not uncontroversial ontological assumptions. It claims that the fact that a runner is safe or out has nothing to do with the ruling of the (...)
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  8. Why Counterpart Theory and Four-Dimensionalism Are Incompatible.Jim Stone - 2005 - Analysis 65 (4):329-333.
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  9. Why Counterpart Theory and Three-Dimensionalism Are Incompatible.Jim Stone - 2005 - Analysis 65 (1):24-27.
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  10. Why There Still Are No People.Jim Stone - 2005 - Philosophy and Phenomenological Research 70 (1):174-191.
    This paper argues that there are no people. If identity isn't what matters in survival, psychological connectedness isn't what matters either. Further, fissioning cases do not support the claim that connectedness is what matters. I consider Peter Unger's view that what matters is a continuous physical realization of a core psychology. I conclude that if identity isn't what matters in survival, nothing matters. This conclusion is deployed to argue that there are no people. Objections to Eliminativism are considered, especially that (...)
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  11. Skepticism as a Theory of Knowledge.Jim Stone - 2000 - Philosophy and Phenomenological Research 60 (3):527-545.
    Skepticism about the external world may very well be correct, so the question is in order: what theory of knowledge flows from skepticism itself? The skeptic can give a relatively simple and intuitive account of knowledge by identifying it with indubitable certainty. Our everyday ‘I know that p’ claims, which typically are part of practical projects, deploy the ideal of knowledge to make assertions closely related to, but weaker than, knowledge claims. The truth of such claims is consistent with skepticism; (...)
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  12. Free Will as a Gift From God: A New Compatibilism.Jim Stone - 1998 - Philosophical Studies 92 (3):257-281.
    I argue that God could give us the robust power to do other than we do in a deterministic universe.
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  13. Epistemology and Depth Psychology.Jim Hopkins - 1988 - In C. Wright & P. Clark (eds.), Mind, Psychoanalysis, and Science. Blackwell.
    Psychoanalysis provides the best explanation of a range of empirical phenomena; epistemic criics do not take this fully into account.
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  14. The Interpretation of Dreams.Jim Hopkins - 1991 - In J. Neu (ed.), The Cambridge Companion to Freud.
    Freud's account of dreams has a cogent interpretive basis.
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  15. Psychoanalysis Representation and Neuroscience: The Freudian Unconscious and the Bayesian Brain.Jim Hopkins - 2012 - In A. Fotopoulu, D. Pfaff & M. Conway (eds.), From the Couch to the Lab: Psychoanalysis, Neuroscience and Cognitive Psychology in Dialoge. Oxford University Press.
    This paper argues that recent work in the 'free energy' program in neuroscience enables us better to understand both consciousness and the Freudian unconscious, including the role of the superego and the id. This work also accords with research in developmental psychology (particularly attachment theory) and with evolutionary considerations bearing on emotional conflict. This argument is carried forward in various ways in the work that follows, including 'Understanding and Healing', 'The Significance of Consilience', 'Psychoanalysis, Philosophical Issues', and 'Kantian Neuroscience and (...)
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  16. Beyond Sacrificial Harm: A Two-Dimensional Model of Utilitarian Psychology.Guy Kahane, Jim A. C. Everett, Brian D. Earp, Lucius Caviola, Nadira S. Faber, Molly J. Crockett & Julian Savulescu - 2018 - Psychological Review 125 (2):131-164.
    Recent research has relied on trolley-type sacrificial moral dilemmas to study utilitarian versus nonutili- tarian modes of moral decision-making. This research has generated important insights into people’s attitudes toward instrumental harm—that is, the sacrifice of an individual to save a greater number. But this approach also has serious limitations. Most notably, it ignores the positive, altruistic core of utilitarianism, which is characterized by impartial concern for the well-being of everyone, whether near or far. Here, we develop, refine, and validate a (...)
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  17. Psychoanalysis, Metaphor, and the Concept of Mind.Jim Hopkins - 2000 - In M. Levine (ed.), The Analytic Freud. Routledge. pp. 11--35.
    In order to understand both consciousness and the Freudian unconscious we need to understand the notion of innerness that we apply to the mind. We can partly do so via the use of the theory of conceptual metaphor, and this casts light on a number of related topics.
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  18. Wittgenstein, Davidson, and Radical Interpretation.Jim Hopkins - 1999 - In F. Hahn (ed.), The Library of Living Philosophers: Donald Davidson. Open Court.
    Davidson's account of interpretation is closely related to that offered by Wittgenstein in his remarks on following a rule.
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  19. Cogito Ergo Sum.Jim Stone - 1993 - Journal of Philosophy 90 (9):462-468.
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  20. Psychoanalysis Interpretation and Science.Jim Hopkins - 1992 - In J. Hopkins & A. Savile (eds.), Psychoanalysis Mind and Art. Blackwell.
    Our commonsense understanding of meaning and motive is realized via the semantic encoding of causal role. Appreciating this together with other features of semantic theories enables us to see that methodological critiques of psychoanalysis, such as those by Popper and Grunbaum, systematically fail to take account of empirical data, and if taken seriously would render commonsense understanding of mind and language void. This is particularly problematic if we consider much of what we regard ourselves as knowing is registered in language, (...)
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  21. Advance Directives, Autonomy and Unintended Death.Jim Stone - 1994 - Bioethics 8 (3):223–246.
    Advance directives typically have two defects. First, most advance directives fail to enable people to effectively avoid unwanted medical intervention. Second, most of them have the potential of ending your life in ways you never intended, years before you had to die.
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  22. Pascal's Wager and the Persistent Vegetative State.Jim Stone - 2007 - Bioethics 21 (2):84–92.
    I argue that a version of Pascal's Wager applies to the persistent vegetative state with sufficient force that it ought to part of advance directives.
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  23. Psychoanalysis, Philosophical Issues.Jim Hopkins - 2014 - In SAGE Reference project Encyclopedia of Philosophy and the Social Sciences. Sage Publications.
    This paper briefly addresses questions of confirmation and disconfirmation in psychoanalysis. It argues that psychoanalysis enjoys Bayesian support as an interpretive extension of commonsense psychology that provides the best explanation of a large range of empirical data. Suggestion provides no such explanation, and recent work in attachment, developmental psychology, and neuroscience accord with this view.
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  24. Why There Are Still No People.Jim Stone - 2005 - Philosophy and Phenomenological Research 70 (1):174-192.
    This paper will argue that there are no people. Let me summarize the argument. In part II of what follows, I argue that if identity isn't what matters in survival, psychological connectedness isn't what matters either. Psychological connectedness, according to Derek Parfit, is the 'holding of particular direct psychological connections,' for example, when a belief, a desire, or some other psychological feature continues to be had ; psychological connectedness consists in two other relations—resemblance plus a cause that produces it. For (...)
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  25. A Theory of Religion Revised.Jim Stone - 2001 - Religious Studies 37 (2):177-189.
    A (revised) account of what all and only religions have in common in virtue of which they are religions.
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  26. Wittgenstein and the Life of Signs.Jim Hopkins - 2004 - In Max Kölbel & Bernhard Weiss (eds.), Wittgenstein's Lasting Significance. Routledge.
    Both Wittgenstein's account of following a rule and his private language argument turn on the notion of interpretation.
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  27. A Theory of Religion.Jim Stone - 1991 - Religious Studies 27 (3):337-351.
    An account of what all and only religions share in virtue of which they are religions.
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  28. Evolution, Consciousness, and the Internality of Mind.Jim Hopkins - 2000 - In P. Carruthers & A. Chamberlen (eds.), Evolution and the Human Mind: Modularity, Language and Meta-Cognition. Cambridge University Press. pp. 276.
    Understanding the notion of innerness that we ascribe to mental items is central to understanding the problem of consciousness, and we can do so in evolutionary and physical terms.
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  29. Dreaming and Certainty.Jim Stone - 1984 - Philosophical Studies 45 (May):353-368.
    I argue that being wide awake is an epistemic virtue which enables me to recognize immediately that I'm wide awake. Also I argue that dreams are imaginings and that the wide awake mind can immediately discern the difference between imaginings and vivid sense experience. Descartes need only pinch himself.
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  30. Understanding “Understanding” in Public Understanding of Science.Joanna K. Huxster, Matthew Slater, Jason Leddington, Victor LoPiccolo, Jeffrey Bergman, Mack Jones, Caroline McGlynn, Nicolas Diaz, Nathan Aspinall, Julia Bresticker & Melissa Hopkins - 2017 - Public Understanding of Science 28:1-16.
    This study examines the conflation of terms such as “knowledge” and “understanding” in peer-reviewed literature, and tests the hypothesis that little current research clearly distinguishes between importantly distinct epistemic states. Two sets of data are presented from papers published in the journal Public Understanding of Science. In the first set, the digital text analysis tool, Voyant, is used to analyze all papers published in 2014 for the use of epistemic success terms. In the second set of data, all papers published (...)
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  31. Introduction: Philosophical Essays on Freud.Jim Hopkins - 1982 - In R. Wollheim & J. Hopkins (eds.), Philosophical Essays on Freud. Cambridge University Press.
    Psychoanalytic theory can be regarded as a cogent extension of commonsense psychology by interpretive means internal to it.
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  32. Patterns of Interpretation: Speech, Action, and Dream.Jim Hopkins - 1999 - In L. Marcus (ed.), Cultural Documents: The Interpretation of Dream. Manchester University Press.
    Freud's account of dreams can be understood via interpretive patterns that span language and action, enabling an extension of common sense psychology that is potentially cogent, cumulative, and radical.
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  33. Hume on Identity: A Defense.Jim Stone - 1981 - Philosophical Studies 40 (2):275 - 282.
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  34. The Problem of Consciousness and the Innerness of the Mind.Jim Hopkins - 2007 - In M. M. McCabe & M. Textor (eds.), Perspectives on Perception.
    The problem of consciousness is taken to concern items which are internal to the mind, and phenomenal, subjective, and private. Understanding the notion of innerness in this enables us to understand the rest in physical terms.
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  35. Emotion, Evolution and Conflict.Jim Hopkins - 2003 - In Man Chung (ed.), Psychoanalytic Knowledge.
    The psychoanalytic notions of identification and projection fit with Darwinian theory in explaining human group conflict and relating it to emotional conflict in individuals.
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  36. Psychoanalytic and Scientific Reasoning.Jim Hopkins - 1996 - British Journal of Psychotherapy 13 (1).
    Psychoanalytic reasoning is an instance of inference to the best explanation and provides an extension of commonsense psychology that is potentially cogent, cumulative, and radical.
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  37.  76
    Global Optimization Studies on the 1-D Phase Problem.Jim Marsh, Martin Zwick & Byrne Lovell - 1996 - Int. J. Of General Systems 25 (1):47-59.
    The Genetic Algorithm (GA) and Simulated Annealing (SA), two techniques for global optimization, were applied to a reduced (simplified) form of the phase problem (RPP) in computational crystallography. Results were compared with those of "enhanced pair flipping" (EPF), a more elaborate problem-specific algorithm incorporating local and global searches. Not surprisingly, EPF did better than the GA or SA approaches, but the existence of GA and SA techniques more advanced than those used in this study suggest that these techniques still hold (...)
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  38.  76
    Process, Image & Intelligence: How Krishnamurti’s Experience of the “Process” is or is Not Relevant to Models of Consciousness.Jim Bardis - 2008 - Proceedings of the Xxii World Congress of Philosophy 45:49-55.
    Written in broad strokes, this paper attempts to draw form Krishnamurti’s life and teachings, a hermeneutics of the human soul’s quest-journey towards transcendent wholeness. It begins with an attempt to frame K’s “process” (the name given to the painful ordeals in his youth that many believe were the catalyst responsible for his metamorphosis) through a variety of disciplines and cultural perspectives, some of which underscore the impasse of scientific objectivity and the limits of phenomenalist categories in general. It then explores (...)
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  39. Addiction, Identity, Morality.Brian D. Earp, Joshua August Skorburg, Jim A. C. Everett & Julian Savulescu - 2019 - AJOB Empirical Bioethics 10 (2):136-153.
    Background: Recent literature on addiction and judgments about the characteristics of agents has focused on the implications of adopting a ‘brain disease’ versus ‘moral weakness’ model of addiction. Typically, such judgments have to do with what capacities an agent has (e.g., the ability to abstain from substance use). Much less work, however, has been conducted on the relationship between addiction and judgments about an agent’s identity, including whether or to what extent an individual is seen as the same person after (...)
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  40. A New Foundation for Physics.Jim Bourassa & David Thomson - 2006 - Infinite Energy Magazine (69):34.
    Modern physics describes the mechanics of the Universe. We have discovered a new foundation for physics, which explains the components of the Universe with precision and depth. We quantify the existence of Aether, subatomic particles, and the force laws. Some aspects of the theory derive from the Standard Model, but much is unique. A key discovery from this new foundation is a mathematically correct Unified Force Theory. Other fundamental discoveries follow, including the origin of the fine structure constant and subatomic (...)
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  41. Defining Textual Entailment.Daniel Z. Korman, Eric Mack, Jacob Jett & Allen H. Renear - forthcoming - Journal of the Association for Information Science and Technology.
    Textual entailment is a relationship that obtains between fragments of text when one fragment in some sense implies the other fragment. The automation of textual entailment recognition supports a wide variety of text-based tasks, including information retrieval, information extraction, question answering, text summarization, and machine translation. Much ingenuity has been devoted to developing algorithms for identifying textual entailments, but relatively little to saying what textual entailment actually is. This article is a review of the logical and philosophical issues involved in (...)
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  42.  21
    Mountain Bike Trail Building, “Dirty” Work, and a New Terrestrial Politics.Jim Cherrington & Jack Black - 2020 - World Futures 1 (76):39-61.
    Dirt is evoked to signify many important facets of mountain bike culture, including its emergence, history, and everyday forms of practice and affect. These significations are also drawn on to frame the sport's (sub)cultural and counterideological affiliations. In this article we examine how both the practice of mountain biking and, specifically, mountain bike trail building, raises questions over the object and latent function of dirt, hinting at the way that abjection can, under certain circumstances, be a source of intrigue and (...)
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  43.  62
    The C-Aplpha Non Exclusion Principle and the Vastly Different Internal Electron and Muon Center of Charge Vacuum Fluctuation Geometry.Jim Wilson - forthcoming - Physics Essays.
    The electronic and muonic hydrogen energy levels are calculated very accurately [1] in Quantum Electrodynamics (QED) by coupling the Dirac Equation four vector (c ,mc2) current covariantly with the external electromagnetic (EM) field four vector in QED’s Interactive Representation (IR). The c -Non Exclusion Principle(c -NEP) states that, if one accepts c as the electron/muon velocity operator because of the very accurate hydrogen energy levels calculated, the one must also accept the resulting electron/muon internal spatial and time coordinate operators (ISaTCO) (...)
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  44. Business Ethics: Diagnosis and Prescription in Caritas in Veritate and Vocation of the Business Leader.Jim Wishloff - 2014 - Solidarity: The Journal for Catholic Social Thought and Secular Ethics 4 (1):Article 8.
    An examination of two recent documents of Catholic Social Doctrine, Caritas in Veritate and Vocation of the Business Leader, is undertaken to uncover their assessment of our current cultural and moral crisis, of which our present economic distress is but one aspect, and their proposal for cultural renewal including a return to sound economic decision making. The intellectual commitments of molders of the modern mind such as Bacon, Descartes, and Hobbes severed morality at its metaphysical roots. Destroying the anthropological underpinnings (...)
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  45. Ontology and Medical Terminology: Why Description Logics Are Not Enough.Werner Ceusters, Barry Smith & Jim Flanagan - 2003 - In Proceedings of the Conference: Towards an Electronic Patient Record (TEPR 2003). Boston, MA: Medical Records Institute.
    Ontology is currently perceived as the solution of first resort for all problems related to biomedical terminology, and the use of description logics is seen as a minimal requirement on adequate ontology-based systems. Contrary to common conceptions, however, description logics alone are not able to prevent incorrect representations; this is because they do not come with a theory indicating what is computed by using them, just as classical arithmetic does not tell us anything about the entities that are added or (...)
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  46. Games and Family Resemblances.Jim Stone - 1994 - Philosophical Investigations 17 (No. 2): 435-443.
    An account of the feature all games share in virtue of which they are games.
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  47. Review of Eric Olson: 'The Human Animal: Personal Identity Without Psychology '. [REVIEW]Jim Stone - 2000 - Philosophy and Phenomenological Research (No. 2):495-497.
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  48. Nietzsche and the Rapture of Aesthetic Disinterestedness: A Response to Heidegger.Jim Urpeth - 2003 - In Nicholas Martin (ed.), Nietzsche and the German Tradition. Bern: Peter Lang. pp. 215-236.
    Taking Heidegger's prominent critique of Nietzsche's treatment of Kant's notion of 'aesthetic disinterestedness' as a foil this paper argues that, contrary to the dominant interpretation, Nietzsche's text contain a positive and radical notion of 'aesthetic disinterestedness'. It is argued that Nietzsche's naturalistic notion of aesthetic disinterestedness is a key feature of his conception of art as natural life process that contests the boundaries, values and libidinal constitution of the 'human'. The ramifications of this for Heidegger's reading of Nietzche's aesthetics are (...)
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  49.  43
    Me, My (Moral) Self, and I.Jim A. C. Everett, Joshua August Skorburg & Jordan Livingston - forthcoming - In Felipe De Brigard & Walter Sinnott Armstrong (eds.), Neuroscience and Philosophy. pp. 111-138.
    In this chapter, we outline the interdisciplinary contributions that philosophy, psychology, and neuroscience have provided in the understanding of the self and identity, focusing on one specific line of burgeoning research: the importance of morality to perceptions of self and identity. Of course, this rather limited focus will exclude much of what psychologists and neuroscientists take to be important to the study of self and identity (that plethora of self-hyphenated terms seen in psychology and neuroscience: self-regulation, self-esteem, self-knowledge, self-concept, self-perception, (...)
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  50. Conscience and Conflict: Darwin, Freud, and the Origins of Human Aggression.Jim Hopkins - 2004 - In Dylan Evans & Pierre Cruse (eds.), Emotion, Evolution, and Rationality. Oxford University Press.
    Darwin's and Freud's theories cohere in explaining human group conflict.
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