Results for 'Judith Felson Duchan'

224 found
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  1. Cognitive and Computer Systems for Understanding Narrative Text.William J. Rapaport, Erwin M. Segal, Stuart C. Shapiro, David A. Zubin, Gail A. Bruder, Judith Felson Duchan & David M. Mark - manuscript
    This project continues our interdisciplinary research into computational and cognitive aspects of narrative comprehension. Our ultimate goal is the development of a computational theory of how humans understand narrative texts. The theory will be informed by joint research from the viewpoints of linguistics, cognitive psychology, the study of language acquisition, literary theory, geography, philosophy, and artificial intelligence. The linguists, literary theorists, and geographers in our group are developing theories of narrative language and spatial understanding that are being tested by the (...)
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  2. Reconciling the opposing effects of neurobiological evidence on criminal sentencing judgments.Corey Allen, Karina Vold, Gidon Felson, Jennifer Blumenthal-Barby & Eyal Aharoni - 2019 - PLoS ONE 1:1-17.
    Legal theorists have characterized physical evidence of brain dysfunction as a double-edged sword, wherein the very quality that reduces the defendant’s responsibility for his transgression could simultaneously increase motivations to punish him by virtue of his apparently increased dangerousness. However, empirical evidence of this pattern has been elusive, perhaps owing to a heavy reliance on singular measures that fail to distinguish between plural, often competing internal motivations for punishment. The present study employed a test of the theorized double-edge pattern using (...)
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  3. The Gender Wars, Academic Freedom and Education.Judith Suissa & Alice Sullivan - 2021 - Journal of Philosophy of Education 55 (1):55-82.
    Philosophical arguments regarding academic freedom can sometimes appear removed from the real conflicts playing out in contemporary universities. This paper focusses on a set of issues at the front line of these conflicts, namely, questions regarding sex, gender and gender identity. We document the ways in which the work of academics has been affected by political activism around these questions and, drawing on our respective disciplinary expertise as a sociologist and a philosopher, elucidate the costs of curtailing discussion on fundamental (...)
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  4. The Liberalism of Fear.Judith Shklar - 1989 - In Nancy L. Rosenblum (ed.), Liberalism and the Moral Life. Harvard University Press.
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  5. On the metaphysics of species.Judith K. Crane - 2004 - Philosophy of Science 71 (2):156-173.
    This paper explains the metaphysical implications of the view that species are individuals (SAI). I first clarify SAI in light of the separate distinctions between individuals and classes, particulars and universals, and abstract and concrete things. I then show why the standard arguments given in defense of SAI are not compelling. Nonetheless, the ontological status of species is linked to the traditional "species problem," in that certain species concepts do entail that species are individuals. I develop the idea that species (...)
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  6. Two approaches to natural kinds.Judith K. Crane - 2021 - Synthese 199 (5-6):12177-12198.
    Philosophical treatments of natural kinds are embedded in two distinct projects. I call these the philosophy of science approach and the philosophy of language approach. Each is characterized by its own set of philosophical questions, concerns, and assumptions. The kinds studied in the philosophy of science approach are projectible categories that can ground inductive inferences and scientific explanation. The kinds studied in the philosophy of language approach are the referential objects of a special linguistic category—natural kind terms—thought to refer directly. (...)
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  7. On being genetically "irresponsible".Judith Andre, Leonard M. Fleck & Thomas Tomlinson - 2000 - Kennedy Institute of Ethics Journal 10 (2):129-146.
    : New genetic technologies continue to emerge that allow us to control the genetic endowment of future children. Increasingly the claim is made that it is morally "irresponsible" for parents to fail to use such technologies when they know their possible children are at risk for a serious genetic disorder. We believe such charges are often unwarranted. Our goal in this article is to offer a careful conceptual analysis of the language of irresponsibility in an effort to encourage more care (...)
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  8. Political theory and the rule of law.Judith N. Shklar - 1987 - In Allan C. Hutchinson & Patrick Monahan (eds.), The rule of law: Ideal or ideology. Transnational. pp. 1-16.
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  9. Improving our aim.Judith Andre, Leonard Fleck & Tom Tomlinson - 1999 - Journal of Medicine and Philosophy 24 (2):130 – 147.
    Bioethicists appearing in the media have been accused of "shooting from the hip" (Rachels, 1991). The criticism is sometimes justified. We identify some reasons our interactions with the press can have bad results and suggest remedies. In particular we describe a target (fostering better public dialogue), obstacles to hitting the target (such as intrinsic and accidental defects in our knowledge) and suggest some practical ways to surmont those obstacles (including seeking out ways to write or speak at length, rather than (...)
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  10. Biological-mereological coincidence.Judith K. Crane - 2012 - Philosophical Studies 161 (2):309-325.
    This paper presents and defends an account of the coincidence of biological organisms with mereological sums of their material components. That is, an organism and the sum of its material components are distinct material objects existing in the same place at the same time. Instead of relying on historical or modal differences to show how such coincident entities are distinct, this paper argues that there is a class of physiological properties of biological organisms that their coincident mereological sums do not (...)
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  11. Making it your own: Writing fellows re-evaluate faculty resistance.Judith Halasz, Maria Brincker, D. Gambs, D. Geraci, A. Queeley & S. Solovyova - 2006 - Across the Disciplines 3.
    Faculty resistance to Writing Across the Curriculum (WAC) is an issue that has been recognized by WAC program directors and practitioners for decades, yet it remains unresolved. Perhaps the problem is not resistance per se, but how we interpret and react to it. Faculty resistance is typically viewed as an impediment to the pedagogical change WAC programs hope to achieve. Moreover, the label of "resistance" is often used without further examination of the underlying causes. Based on research and experience as (...)
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  12. Moral Distress in Healthcare.Judith Andre - 2002 - Bioethics Forum 18 (1-2):44-46.
    Moral distress is the sense that one must do, or cooperate in, what is wrong. It is paradigmatically faced by nurses, but it is almost a universal occupational hazard.
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  13. How can universities promote academic freedom? Insights from the front line of the gender wars.Judith Suissa & Alice Sullivan - 2022 - Impact 2022 (27):2-61.
    The UK Government's Higher Education (Freedom of Speech) Bill is currently progressing through Parliament. The bill is designed to strengthen free speech and academic freedom in higher education, in response to what former Education Secretary Gavin Williamson describes as ‘the rise of intolerance and cancel culture upon our campuses’. But is there really a crisis of academic freedom in British universities?To see that there is, say Judith Suissa and Alice Sullivan, we need only look at the contemporary reality of (...)
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  14. Locke's theory of classification.Judith Crane - 2003 - British Journal for the History of Philosophy 11 (2):249 – 259.
    Locke is often cited as a precursor to contemporary natural kind realism. However, careful attention to Locke’s arguments show that he was unequivocally a conventionalist about natural kinds. To the extent that contemporary natural kind realists see themselves as following Locke, they misunderstand what he was trying to do. Locke argues that natural kinds require either dubious metaphysical commitments (e.g., to substantial forms or universals), or a question-begging version of essentialism. Contemporary natural kind realists face a similar dilemma, and should (...)
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  15. Species Concepts and Natural Goodness.Judith K. Crane & Ronald Sandler - 2011 - In Joseph Keim Campbell, Michael O'Rourke & Matthew H. Slater (eds.), Carving nature at its joints: natural kinds in metaphysics and science. Cambridge, MA, USA: MIT Press. pp. 289.
    This chapter defends a pluralist understanding of species on which a normative species concept is viable and can support natural goodness evaluations. The central question here is thus: Since organisms are to be evaluated as members of their species, how does a proper understanding of species affect the feasibility of natural goodness evaluations? Philippa Foot has argued for a form of natural goodness evaluation in which living things are evaluated by how well fitted they are for flourishing as members of (...)
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  16. What are codes of ethics for?Judith Lichtenberg - 1996 - In Margaret Coady & Sidney Bloch (eds.), Codes of ethics and the professions. Victoria, Australia: Melbourne University Press. pp. 13--27.
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  17. About Altruism.Judith Lichtenberg - 2008 - Philosophy and Public Policy Quarterly 28 (1/2):2-6.
    When people act to aid others, they get something in return—at the very least, the satisfaction of having their desire to help fulfilled. Some conclude from this and other puzzles about motivation that people always act simply to benefit themselves. But this is an error: there is altruism in the world, although it is often inextricably linked with the well-being of the agent who does good.
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  18. The Renewal of Perception in Religious Faith and Biblical Narrative.Wolfe Judith - 2021 - European Journal for Philosophy of Religion 13 (4):111-128.
    Religious faith may manifest itself, among other things, as a mode of seeing the ordinary world, which invests that world imaginatively (or inspiredly) with an unseen depth of divine intention and spiritual significance. While such seeing may well be truthful, it is also unavoidably constructive, involving the imagination in its philosophical sense of the capacity to organize underdetermined or ambiguous sense date into a whole or gestalt. One of the characteristic ways in which biblical narratives inspire and teach is by (...)
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  19. Remember the Nurses.Judith Andre - 2006 - Apa Newsletter on Feminism and Philosophy 5 (2):19-21.
    As feminist theory explicates its fundamental principles – justice for the oppressed – it can lose its essential focus on the situation of women. One example is the inattention to nurses within feminist bioethics. Nurses deserve attention because most are women, but also because their lack of power is paradigmatic of patriarchy. Those examining ethics consultations should discuss whether nurses are allowed to request them. But feminists also need to imagine ways in which nurses can be heard when, for instance, (...)
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  20. Identity and distinction in Spinoza's ethics.Judith K. Crane & Ronald Sandler - 2005 - Pacific Philosophical Quarterly 86 (2):188–200.
    In Ethics 1p5, Spinoza asserts that “In Nature there cannot be two or more substances of the same nature or attribute”. This claim serves as a crucial premise in Spinoza’s argument for substance monism, yet Spinoza’s demonstration of the 1p5 claim is surprisingly brief and appears to have obvious difficulties. This paper answers the principle difficulties that have been raised in response to Spinoza’s argument for 1p5. The key to understanding the 1p5 argument lies in a proper understanding of the (...)
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  21. La desesperación especulativa de Søren Kierkegaard.Judith Butler, Leandro Sánchez Marín & Jhoan Sebastian David Giraldo (eds.) - 2020 - Medellín, Colombia: Ennegativo Ediciones.
    “Postularse como un ser radicalmente autogenerado, ser el autor de la propia voluntad y conocimiento, es negar que uno está constituido en y por lo que es infinitamente más grande que el individuo humano. Kierkegaard llamará a esta fuente más grande que todo lo humano 'Dios' o 'el infinito'. Negar que uno está constituido en lo que es más grande que uno mismo es, para Kierkegaard, estar en una especie de desesperación”.
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  22. Respecting Diversity, Respecting Complexity.Judith Andre - 2002 - Law Review of Michigan State University-Detroit College of Law 2002 (4):911-916.
    A discussion of the ethics of stem cell research, and attempts to regulate it.
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  23. A Larger Space for Moral Reflection.Judith Andre - 1998 - Ethical Currents (53):6-8.
    Margaret Urban Walker argues that hospital ethics committees should think of their task as "keeping moral space open." I develop her suggestion with analogies: Enlarge the windows (i.e., expand what counts as an ethical issue); add rooms and doors (i.e., choose particular issues to engage). Examples include confidentiality defined as information flow, and moral distress in the healthcare workplace.
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  24. ‘The Ordinary’ in Stanley Cavell and Jacques Derrida.Judith Wolfe - 2013 - Minerva - An Internet Journal of Philosophy 17 (1).
    This paper analyses the opposing accounts of ‘the ordinary’ given by Jacques Derrida and Stanley Cavell, beginning with their competing interpretations of J. L. Austin¹s thought on ordinary language. These accounts are presented as mutually critiquing: Derrida¹s deconstructive method poses an effective challenge to Cavell¹s claim that the ordinary is irreducible by further philosophical analysis, while, conversely, Cavell¹s valorisation of the human draws attention to a residual humanity in Derrida¹s text which Derrida cannot account for. The two philosophers’ approaches are, (...)
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  25. O que é a crítica? Um ensaio sobre a virtude de Foucault.Judith Butler & Gustavo Hessmann Dalaqua - 2013 - Cadernos de Ética E Filosofia Política 22:159-179.
    Tradução do artigo "What is Critique? An Essay on Foucault's Virtue.".
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  26. The alleged incompatibility of business and medical ethics.Judith Andre - 1999 - HEC Forum 11 (4):288-292.
    Business Ethics and medical ethics are in principle compatible: In particular, the tools of business ethics can be useful to those doing healthcare ethics. Health care could be conducted as a business and maintain its moral core.
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  27. Racism in the Head, Racism in the World.Judith Lichtenberg - 2002 - In Galston Gehring (ed.), Philosophical Dimensions of Public Policy. pp. 91-96.
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  28. Responsibility for Global Poverty.Judith Lichtenberg - forthcoming - In Sombetzki Heidbrink (ed.), Handbook of Responsibility. Springer.
    This paper has two aims. The first is to describe several sources of the moral responsibility to remedy or alleviate global poverty—reasons why an agent might have such a responsibility. The second is to consider what sorts of agents bear the responsibilities associated with each source—in particular, whether they are collective agents like states, societies, or corporations, on the one hand, or individual human beings on the other. We often talk about our responsibilities to the poorest people in the world, (...)
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  29. Virtue and Age.Judith Andre - manuscript
    Elderhood—or old age, if one prefers—is a stage of life without much cultural meaning. It is generally viewed simply as a time of regrettable decline. Paying more attention to it, to its special pleasures and developmental achievements, will be helpful not only to elders but to those younger as well. I will argue that three existential tasks are central in elderhood, but also important at every other stage of adult life. I identify three: cherishing the present, accepting the past, and (...)
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  30. Animal Morality: What It Means and Why It Matters.Susana Monsó, Judith Benz-Schwarzburg & Annika Bremhorst - 2018 - The Journal of Ethics 22 (3-4):283-310.
    It has been argued that some animals are moral subjects, that is, beings who are capable of behaving on the basis of moral motivations. In this paper, we do not challenge this claim. Instead, we presuppose its plausibility in order to explore what ethical consequences follow from it. Using the capabilities approach, we argue that beings who are moral subjects are entitled to enjoy positive opportunities for the flourishing of their moral capabilities, and that the thwarting of these capabilities entails (...)
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  31. Financial performance of credit unions in Ghana: A study of six selected credit unions in the Western and Central Regions.Judith Brobbey - 2015 - In University of Cape Coast MBA Thesis. Cape Coast, Ghana: pp. 1-83.
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  32. Ondernemen in de open samenleving.Rutger Claassen & Judith van Erp - 2019 - Den Haag, Nederland: Boom Bestuurskunde.
    Internationale markten zijn de afgelopen decennia sterk mondiaal ontwikkeld en veel bedrijven zijn in deze geglobaliseerde context uitgegroeid tot belangrijke, quasi-politieke spelers. Deze stormachtige economische ontwikkelingen bieden kansen en welvaart aan velen, maar kennen echter ook schaduwzijden, van milieubelasting tot belastingontwijking. In deze bundel verkennen de auteurs het idee van de ‘open samenleving’ om vat te krijgen op deze nieuwe realiteit. De open samenleving naar het ideaal van Popper, waarin mensen de vrijheid hebben om hun mening uit te drukken, initiatief (...)
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  33. Creating a World in the Head: The Conscious Apprehension of Neural Content Originating from Internal Sources.Stan Klein & Judith Loftus - forthcoming - Psychology of Consciousness: Theory, Research, and Practice.
    Klein, Nguyen, & Zhang (in press) argued that the evolutionary transition from respondent to agent during the Cambrian Explosion would be a promising vantage point from which to gain insight into the evolution of organic sentience. They focused on how increased competition for resources -- in consequence of the proliferation of new, neurally sophisticated life-forms -- made awareness of the external world (in the service of agentic acts) an adaptive priority. The explanatory scope of Klein et al (in press) was (...)
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  34. Principals' administrative competence and teachers' work performance in secondary schools in Calabar Education Zone of Cross River State, Nigeria.Valentine Joseph Owan & Judith Nonye Agunwa - 2019 - Humanities and Social Sciences Letters 7 (1):20-28.
    The focus of this study was to investigate "principals' administrative competence and teachers work performance" in Calabar Education zone. Four null hypotheses were tested in the course of the study. Correlational research design was adopted, while purposive sampling technique was used in selecting a sample of 800 teachers. Two instruments were used for data collection including "Principals' Administrative Competence Questionnaire (PACQ)," and Teachers' Work Performance Questionnaire (TWPQ)." Pearson Product Moment Correlation Analysis (r) and multiple regression (R) analysis were employed to (...)
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  35. (1 other version)Gedanken zu einer sozialen Handlungstheorie der Kunst.Judith Siegmund - 2015 - In Daniel Martin Feige & Judith Siegmund (eds.), Kunst Und Handlung: Ästhetische Und Handlungstheoretische Perspektiven. Bielefeld: Transcript Verlag. pp. 119-142.
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  36. Schopenhauer's Understanding of Schelling.Alistair Welchman & Judith Norman - 2020 - In Robert L. Wicks (ed.), The Oxford Handbook of Schopenhauer. New York, NY: Oxford University Press, Usa. pp. 49-66.
    Schopenhauer is famously abusive toward his philosophical contemporary and rival, Friedrich William Joseph von Schelling. This chapter examines the motivations for Schopenhauer’s immoderate attitude and the substance behind the insults. It looks carefully at both the nature of the insults and substantive critical objections Schopenhauer had to Schelling’s philosophy, both to Schelling’s metaphysical description of the thing-in-itself and Schelling’s epistemic mechanism of intellectual intuition. It concludes that Schopenhauer’s substantive criticism is reasonable and that Schopenhauer does in fact avoid Schelling’s errors: (...)
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  37. Introduction to The New Schelling.Alistair Welchman & Judith Norman - 2004 - In Alistair Welchman & Judith Norman (eds.), The New Schelling. London, UK: Continuum. pp. 1-12.
    Friedrich Wilhelm Joseph von Schelling (1775-1854) is often thought of as a “philosopher’s philosopher,” with a specialist rather than generalist appeal. One reason for Schelling’s lack of popularity is that he is something of a problem case for traditional narratives about the history of philosophy. Although he is often slotted in as a stepping stone on the intellectual journey from Kant to Hegel, any attention to his ideas will show that he does not fit this role very well. His later (...)
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  38. How dogs perceive humans and how humans should treat their pet dogs: Linking cognition with ethics.Judith Benz-Schwarzburg, Susana Monsó & Ludwig Huber - 2020 - Frontiers in Psychology 11:584037.
    Humans interact with animals in numerous ways and on numerous levels. We are indeed living in an “animal”s world,’ in the sense that our lives are very much intertwined with the lives of animals. This also means that animals, like those dogs we commonly refer to as our pets, are living in a “human’s world” in the sense that it is us, not them, who, to a large degree, define and manage the interactions we have with them. In this sense, (...)
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  39. On the Moral Considerability of Homo sapiens and Other Species.Ronald Sandler & Judith Crane - 2006 - Environmental Values 15 (1):69 - 84.
    It is sometimes claimed that as members of the species Homo sapiens we have a responsibility to promote the good of Homo sapiens itself (distinct from the good of its individual members). Lawrence Johnson has recently defended this claim as part of his approach to resolving the problem of future generations. We show that there are several difficulties with Johnson's argument, many of which are likely to attend any attempt to establish the moral considerability of Homo sapiens or species generally. (...)
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  40. Stephen P. Turner. Cognitive Science and the Social. A Primer. [REVIEW]Judith H. Martens - 2020 - Soziologische Revue 43 (4):584–589.
    The work under consideration addresses a fundamental problem in cognitive neuroscience and social science. Although both aim to explain and understand human action, their explanatory tools are so divergent that our theories are riddled with conceptual gaps. Both fields are moreover permeated by old-fashioned action theory and folk psychology, which explain and understand action in terms of mind-reading and attributing beliefs, desires, and intentions to others. While these theories may work pragmatically in navigating our social world, they are increasingly questioned (...)
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  41. Philosophy, Theology, and Philosophical-Theological Biblical Exegesis.Eleonore Stump & Judith Wolfe - 2022 - European Journal for Philosophy of Religion 13 (4).
    Religious faith may manifest itself, among other things, as a mode of seeing the ordinary world, which invests that world imaginatively with an unseen depth of divine intention and spiritual significance. While such seeing may well be truthful, it is also unavoidably constructive, involving the imagination in its philosophical sense of the capacity to organize underdetermined or ambiguous sense date into a whole or gestalt. One of the characteristic ways in which biblical narratives inspire and teach is by renewing their (...)
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  42. Tertiary students’ social media management attitudes and academic performance in Cross River State.Festus Obun Arop, Judith Nonye Agunwa & Valentine Joseph Owan - 2019 - British International Journal of Education And Social Sciences 6 (3):48-52.
    This paper examined the relationship between tertiary students’ social media management attitudes and their academic performance in Cross River State, with a specific focus on Facebook, WhatsApp, and Instagram. To achieve this purpose, three null hypotheses were formulated accordingly. The study adopted a correlational research design. Cluster and simple random sampling techniques were used to select a sample of 1000 students from the entire population. The instrument used for data collection was a questionnaire titled: Tertiary Students’ Social Media Management and (...)
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  43. The Question of Romanticism.Alistair Welchman & Judith Norman - 2011 - In Alison Stone (ed.), The Edinburgh Critical History of Philosophy: Volume 5—The Nineteenth Century. pp. 47-68.
    ‘Romanticism’ is one of the more hotly contested terms in the history of ideas. There is a singular lack of consensus as to its meaning, unity, and historical extension, and many attempts to fix the category of romanticism very quickly become blurry. As a result, the great historian of ideas, Arthur Lovejoy, famously concludes that: ‘the word ‘romantic’ has come to mean so many things that, by itself, it means nothing. It has ceased to perform the function of a verbal (...)
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  44. From Criticizing Progress to Psychoanalyzing Critical Theory. An Interview with Amy Allen.Tobias Heinze & Judith-Frederike Popp - 2024 - Krisis | Journal for Contemporary Philosophy 44 (1):116-125.
    The importance of psychoanalysis for Critical Theory is unabated, but controversial. Regressive reactions to the crises of capitalism are currently reviving the debate about its relevance for the Frankfurt School. The interview with Amy Allen follows the focus of her book Critique on the Couch (2020) through questions about the significance of psychoanalysis for Critical Theory as well as the implications of her arguments for a theory of the subject and a critique of eurocentric concepts of progress.
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  45. Arbeit an der Theoriepraxis. Literaturessay zu „Critique on the Couch. Why Critical Theory needs Psychoanalysis“ von Amy Allen.Tobias Heinze & Judith-Frederike Popp - 2022 - Soziopolis.De.
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  46. What projects and why.Mandy Simons, David Beaver, Judith Tonhauser & Craige Roberts - 2010 - Semantics and Linguistic Theory 20:309-327.
    The empirical phenomenon at the center of this paper is projection, which we define (uncontroversially) as follows: (1) Definition of projection An implication projects if and only if it survives as an utterance implication when the expression that triggers the implication occurs under the syntactic scope of an entailment-cancelling operator. Projection is observed, for example, with utterances containing aspectual verbs like stop, as shown in (2) and (3) with examples from English and Paraguayan Guaraní (Paraguay, Tupí-Guaraní).1 The Guaraní example in (...)
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  47. “Microbiota, symbiosis and individuality summer school” meeting report.Isobel Ronai, Gregor P. Greslehner, Federico Boem, Judith Carlisle, Adrian Stencel, Javier Suárez, Saliha Bayir, Wiebke Bretting, Joana Formosinho, Anna C. Guerrero, William H. Morgan, Cybèle Prigot-Maurice, Salome Rodeck, Marie Vasse, Jacqueline M. Wallis & Oryan Zacks - 2020 - Microbiome 8:117.
    How does microbiota research impact our understanding of biological individuality? We summarize the interdisciplinary summer school on "Microbiota, Symbiosis and Individuality: Conceptual and Philosophical Issues" (July 2019), which was supported by a European Research Council starting grant project "Immunity, DEvelopment, and the Microbiota" (IDEM). The summer school centered around interdisciplinary group work on four facets of microbiota research: holobionts, individuality, causation, and human health. The conceptual discussion of cutting-edge empirical research provided new insights into microbiota and highlights the value of (...)
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  48. Quality assurance practices and students’ performance evaluation in universities of South-South Nigeria: A structural equation modelling approach.Bassey Asuquo Bassey, Valentine Joseph Owan & Judith Nonye Agunwa - 2019 - British Journal of Psychology Research 7 (3):1-13.
    This study assessed quality assurance practices and students’ performance evaluation in universities of South-South Nigeria using an SEM approach. Three null hypotheses guided the study. Based on factorial research design, and using a stratified random sampling technique, a sample of 878 academic staff were drawn from a sampling frame of 15 universities in South-South Nigeria. Quality Assurance Practices Students’ Performance Evaluation Scale (QAPSPES) with split-half reliability estimates ranging from .86–.92, was used as the instruments for data collection. Multiple regression and (...)
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  49. Finding Our Way through Phenotypes.Andrew R. Deans, Suzanna E. Lewis, Eva Huala, Salvatore S. Anzaldo, Michael Ashburner, James P. Balhoff, David C. Blackburn, Judith A. Blake, J. Gordon Burleigh, Bruno Chanet, Laurel D. Cooper, Mélanie Courtot, Sándor Csösz, Hong Cui, Barry Smith & Others - 2015 - PLoS Biol 13 (1):e1002033.
    Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across many key fields in biology, including genomics, systems biology, development, medicine, evolution, ecology, and systematics. Here we survey the current phenomics landscape, including data resources and handling, and the progress that (...)
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  50. Protein Ontology: A controlled structured network of protein entities.A. Natale Darren, N. Arighi Cecilia, A. Blake Judith, J. Bult Carol, R. Christie Karen, Cowart Julie, D’Eustachio Peter, D. Diehl Alexander, J. Drabkin Harold, Helfer Olivia, Barry Smith & Others - 2013 - Nucleic Acids Research 42 (1):D415-21..
    The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates to (...)
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