Results for 'Justin Elser'

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  1. A Plant Disease Extension of the Infectious Disease Ontology.Ramona Walls, Barry Smith, Elser Justin, Goldfain Albert & W. Stevenson Dennis - 2012 - In Proceedings of the Third International Conference on Biomedical Ontology (CEUR 897). pp. 1-5.
    Plants from a handful of species provide the primary source of food for all people, yet this source is vulnerable to multiple stressors, such as disease, drought, and nutrient deficiency. With rapid population growth and climate uncertainty, the need to produce crops that can tolerate or resist plant stressors is more crucial than ever. Traditional plant breeding methods may not be sufficient to overcome this challenge, and methods such as highOthroughput sequencing and automated scoring of phenotypes can provide significant new (...)
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  2. The Plant Ontology: A Common Reference Ontology for Plants.L. Walls Ramona, D. Cooper Laurel, Elser Justin, W. Stevenson Dennis, Barry Smith, Mungall Chris, A. Gandolfo Maria & Jaiswal Pankaj - 2010 - In Proceedings of the Workshop on Bio-Ontologies, ISMB, Boston, July, 2010.
    The Plant Ontology (PO) (http://www.plantontology.org) (Jaiswal et al., 2005; Avraham et al., 2008) was designed to facilitate cross-database querying and to foster consistent use of plant-specific terminology in annotation. As new data are generated from the ever-expanding list of plant genome projects, the need for a consistent, cross-taxon vocabulary has grown. To meet this need, the PO is being expanded to represent all plants. This is the first ontology designed to encompass anatomical structures as well as growth and developmental stages (...)
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  3. The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.Laurel Cooper, Ramona Walls, Justin Elser, Maria A. Gandolfo, Dennis W. Stevenson, Barry Smith & Others - 2013 - Plant and Cell Physiology 54 (2):1-23..
    The Plant Ontology (PO; http://www.plantontology.org/) is a publicly-available, collaborative effort to develop and maintain a controlled, structured vocabulary (“ontology”) of terms to describe plant anatomy, morphology and the stages of plant development. The goals of the PO are to link (annotate) gene expression and phenotype data to plant structures and stages of plant development, using the data model adopted by the Gene Ontology. From its original design covering only rice, maize and Arabidopsis, the scope of the PO has been expanded (...)
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  4. The Planteome Database: An Integrated Resource for Reference Ontologies, Plant Genomics and Phenomics.Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin L. Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud & Pankaj Jaiswal - 2018 - Nucleic Acids Research 46 (D1):D1168–D1180.
    The Planteome project provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology, and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides (...)
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  5. Ontologies as Integrative Tools for Plant Science.Ramona Walls, Balaji Athreya, Laurel Cooper, Justin Elser, Maria A. Gandolfo, Pankaj Jaiswal, Christopher J. Mungall, Justin Preece, Stefan Rensing, Barry Smith & Dennis W. Stevenson - 2012 - American Journal of Botany 99 (8):1263–1275.
    Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of the Semantic Web. This paper provides background on what bio-ontologies are, why they are relevant to botany, and the principles of ontology development. It includes an overview of ontologies and related resources that are relevant to plant science, (...)
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  6. The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.Ramona Lynn Walls, Laurel Cooper, Justin Lee Elser, Maria Alejandra Gandolfo, Christopher J. Mungall, Barry Smith, Dennis William Stevenson & Pankaj Jaiswal - 2019 - Frontiers in Plant Science 10.
    The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from genomic and phenomic studies. This paper describes the structure of the ontology and the design principles we used in constructing PO terms for plant development stages. It also provides details of the methodology and rationale behind our revision and expansion of the PO to cover development stages for all plants, particularly (...)
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  7.  84
    Symposium on Justin Remhof’s Nietzsche’s Constructivism: A Metaphysics of Material Objects.Justin Remhof - 2021 - Philosophia 49 (2):571-583.
    Symposium on Nietzsche's Constructivism (Routledge, 2018), replies to Adler, Cabrera, Doyle, Migotti, Sinhababu, Pedersen.
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  8. Recent Work on Physicalism.Justin Tiehen - forthcoming - Analysis.
    A review of recent work on physicalism, focusing on what it means to say nothing exists over and above the physical, how "the physical" should be defined, and the causal argument for physicalism.
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  9.  16
    Has the Side-Effect Effect Been Cancelled? (No, Not Yet).Justin Sytsma, Robert Bishop & John Schwenkler - forthcoming - Synthese.
    A large body of research has found that people judge bad foreseen side effects to be more intentional than good ones. While the standard interpretation of this Side-Effect Effect (SEE) takes it to show that the ordinary concept of intentionality is influenced by normative considerations, a competing account holds that it is the result of pragmatic pressure to express moral censure and, thus, that the SEE is an experimental artifact. Attempts to reveal this have previously been unsuccessful, however. That is (...)
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  10.  42
    Spinoza.Justin Steinberg & Valtteri Viljanen - 2021 - Cambridge: Polity.
    Benedict de Spinoza is one of the most controversial and enigmatic thinkers in the history of philosophy. His greatest work, Ethics (1677), developed a comprehensive philosophical system and argued that God and Nature are identical. His scandalous Theological-Political Treatise (1670) provoked outrage during his lifetime due to its biblical criticism, anticlericalism, and defense of the freedom to philosophize. Together, these works earned Spinoza a reputation as a singularly radical thinker. -/- In this book, Steinberg and Viljanen offer a concise and (...)
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  11. On the View That People and Not Institutions Bear Primary Credit for Success in Governance: Confucian Arguments.Justin Tiwald - 2019 - Journal of Confucian Philosophy and Culture 32:65-97.
    This paper explicates the influential Confucian view that “people” and not “institutional rules” are the proper sources of good governance and social order, as well as some notable Confucian objections to this position. It takes Xunzi 荀子, Hu Hong 胡宏, and Zhu Xi 朱熹 as the primary representatives of the “virtue-centered” position, which holds that people’s good character and not institutional rules bear primary credit for successful governance. And it takes Huang Zongxi 黃宗羲 as a major advocate for the “institutionalist” (...)
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  12. Ageing and the Goal of Evolution.Justin Garson - 2021 - History and Philosophy of the Life Sciences 43 (1):1-16.
    There is a certain metaphor that has enjoyed tremendous longevity in the evolution of ageing literature. According to this metaphor, nature has a certain goal or purpose, the perpetuation of the species, or, alternatively, the reproductive success of the individual. In relation to this goal, the individual organism has a function, job, or task, namely, to breed and, in some species, to raise its brood to maturity. On this picture, those who cannot, or can no longer, reproduce are somehow invisible (...)
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  13. Moral Grandstanding.Justin Tosi & Brandon Warmke - 2016 - Philosophy and Public Affairs 44 (3):197-217.
    Moral grandstanding is a pervasive feature of public discourse. Many of us can likely recognize that we have engaged in grandstanding at one time or another. While there is nothing new about the phenomenon of grandstanding, we think that it has not received the philosophical attention it deserves. In this essay, we provide an account of moral grandstanding as the use of public discourse for moral self-promotion. We then show that our account, with support from some standard theses of social (...)
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  14. Moral Disagreement and Moral Semantics.Justin Khoo & Joshua Knobe - 2016 - Noûs:109-143.
    When speakers utter conflicting moral sentences, it seems clear that they disagree. It has often been suggested that the fact that the speakers disagree gives us evidence for a claim about the semantics of the sentences they are uttering. Specifically, it has been suggested that the existence of the disagreement gives us reason to infer that there must be an incompatibility between the contents of these sentences. This inference then plays a key role in a now-standard argument against certain theories (...)
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  15. A Generalized Selected Effects Theory of Function.Justin Garson - 2017 - Philosophy of Science 84 (3):523-543.
    I present and defend the generalized selected effects theory (GSE) of function. According to GSE, the function of a trait consists in the activity that contributed to its bearer’s differential reproduction, or differential retention, within a population. Unlike the traditional selected effects (SE) theory, it does not require that the functional trait helped its bearer reproduce; differential retention is enough. Although the core theory has been presented previously, I go significantly beyond those presentations by providing a new argument for GSE (...)
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  16. Teleosemantics, Selection and Novel Contents.Justin Garson & David Papineau - 2019 - Biology and Philosophy 34 (3):36.
    Mainstream teleosemantics is the view that mental representation should be understood in terms of biological functions, which, in turn, should be understood in terms of selection processes. One of the traditional criticisms of teleosemantics is the problem of novel contents: how can teleosemantics explain our ability to represent properties that are evolutionarily novel? In response, some have argued that by generalizing the notion of a selection process to include phenomena such as operant conditioning, and the neural selection that underlies it, (...)
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  17. The Functional Sense of Mechanism.Justin Garson - 2013 - Philosophy of Science 80 (3):317-333.
    This article presents a distinct sense of ‘mechanism’, which I call the functional sense of mechanism. According to this sense, mechanisms serve functions, and this fact places substantive restrictions on the kinds of system activities ‘for which’ there can be a mechanism. On this view, there are no mechanisms for pathology; pathologies result from disrupting mechanisms for functions. Second, on this sense, natural selection is probably not a mechanism for evolution because it does not serve a function. After distinguishing this (...)
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  18. How to Be a Function Pluralist.Justin Garson - 2018 - British Journal for the Philosophy of Science 69 (4):1101-1122.
    I distinguish two forms of pluralism about biological functions, between-discipline pluralism and within-discipline pluralism. Between-discipline pluralism holds that different theories of function are appropriate for different subdisciplines of biology and psychology. I provide reasons for rejecting this view. Instead, I recommend within-discipline pluralism, which emphasizes the plurality of function concepts at play within any given subdiscipline of biology and psychology.
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  19.  22
    Do Transposable Elements Have Functions of Their Very Own?Justin Garson - 2022 - Biology and Philosophy 37 (3):1-18.
    Philosophers who study the problem of biological function often begin their deliberations by reflecting on the functions of parts of animals, or the behavior of animals. Applying theories of biological function to unconventional or borderline cases can help us to better evaluate and refine those theories. This is the case when we consider whether parts of transposable elements —bits of “selfish” DNA that move about within a host genome—have functions of their own, that is, whether the parts of TEs have (...)
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  20. Modal Disagreements.Justin Khoo - 2015 - Inquiry: An Interdisciplinary Journal of Philosophy 58 (5):511-534.
    It is often assumed that when one party felicitously rejects an assertion made by an- other party, the first party thinks that the proposition asserted by the second is false. This assumption underlies various disagreement arguments used to challenge contex- tualism about some class of expressions. As such, many contextualists have resisted these arguments on the grounds that the disagreements in question may not be over the proposition literally asserted. The result appears to be a dialectical stalemate, with no independent (...)
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  21. Margaret MacDonald’s Scientific Common-Sense Philosophy.Justin Vlasits - 2021 - British Journal for the History of Philosophy 30 (2):267-287.
    Margaret MacDonald (1907–56) was a central figure in the history of early analytic philosophy in Britain due to both her editorial work as well as her own writings. While her later work on aesthetics and political philosophy has recently received attention, her early writings in the 1930s present a coherent and, for its time, strikingly original blend of common-sense and scientific philosophy. In these papers, MacDonald tackles the central problems of philosophy of her day: verification, the problem of induction, and (...)
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  22. Nietzsche: Metaphysician.Justin Remhof - 2021 - Journal of the American Philosophical Association 7 (1):117-132.
    Perhaps the most fundamental disagreement concerning Nietzsche's view of metaphysics is that some commentators believe Nietzsche has a positive, systematic metaphysical project, and others deny this. Those who deny it hold that Nietzsche believes metaphysics has a special problem, that is, a distinctively problematic feature that distinguishes metaphysics from other areas of philosophy. In this paper, I investigate important features of Nietzsche's metametaphysics in order to argue that Nietzsche does not, in fact, think metaphysics has a special problem. The result (...)
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  23. Function, Selection, and Construction in the Brain.Justin Garson - 2012 - Synthese 189 (3):451-481.
    A common misunderstanding of the selected effects theory of function is that natural selection operating over an evolutionary time scale is the only functionbestowing process in the natural world. This construal of the selected effects theory conflicts with the existence and ubiquity of neurobiological functions that are evolutionary novel, such as structures underlying reading ability. This conflict has suggested to some that, while the selected effects theory may be relevant to some areas of evolutionary biology, its relevance to neuroscience is (...)
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  24. There Are No Ahistorical Theories of Function.Justin Garson - 2019 - Philosophy of Science 86 (5):1146-1156.
    Theories of function are conventionally divided up into historical and ahistorical ones. Proponents of ahistorical theories often cite the ahistoricity of their accounts as a major virtue. Here, I argue that none of the mainstream “ahistorical” accounts are actually ahistorical. All of them embed, implicitly or explicitly, an appeal to history. In Boorse’s goal-contribution account, history is latent in the idea of statistical-typicality. In the propensity theory, history is implicit in the idea of a species’ natural habitat. In the causal (...)
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  25.  62
    Perceptual Input Is Not Conceptual Content.Justin Halberda - 2019 - Trends in Cognitive Sciences 23 (8):636-638.
    Can we represent number approximately? A seductive reductionist notion is that participants in number tasks rely on continuous extent cues (e.g.,area) and therefore that the representations underlying performance lack numerical content. I suggest that this notion embraces a misconception: that perceptual input determines conceptual content.
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  26. Triviality Results and the Relationship Between Logical and Natural Languages.Justin Khoo & Matthew Mandelkern - 2019 - Mind 128 (510):485-526.
    Inquiry into the meaning of logical terms in natural language (‘and’, ‘or’, ‘not’, ‘if’) has generally proceeded along two dimensions. On the one hand, semantic theories aim to predict native speaker intuitions about the natural language sentences involving those logical terms. On the other hand, logical theories explore the formal properties of the translations of those terms into formal languages. Sometimes, these two lines of inquiry appear to be in tension: for instance, our best logical investigation into conditional connectives may (...)
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  27. The Puzzle of the Sophist.Justin Vlasits - forthcoming - Archiv für Geschichte der Philosophie.
    The many definitions of sophistry at the beginning of Plato’s Sophist have puzzled scholars just as much as they puzzled the dialogue’s main speakers: the Visitor from Elea and Theaetetus. The aim of this paper is to give an account of that puzzlement. This puzzlement, it is argued, stems not from a logical or epistemological problem, but from the metaphysical problem that, given the multiplicity of accounts, the interlocutors do not know what the sophist essentially is. It transpires that, in (...)
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  28. David Lewis in the Lab: Experimental Results on the Emergence of Meaning.Justin Bruner, Cailin O’Connor, Hannah Rubin & Simon M. Huttegger - 2018 - Synthese 195 (2):603-621.
    In this paper we use an experimental approach to investigate how linguistic conventions can emerge in a society without explicit agreement. As a starting point we consider the signaling game introduced by Lewis. We find that in experimental settings, small groups can quickly develop conventions of signal meaning in these games. We also investigate versions of the game where the theoretical literature indicates that meaning will be less likely to arise—when there are more than two states for actors to transfer (...)
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  29. Quasi Indexicals.Justin Khoo - 2020 - Philosophy and Phenomenological Research 100 (1):26-53.
    I argue that not all context dependent expressions are alike. Pure (or ordinary) indexicals behave more or less as Kaplan thought. But quasi indexicals behave in some ways like indexicals and in other ways not like indexicals. A quasi indexical sentence φ allows for cases in which one party utters φ and the other its negation, and neither party’s claim has to be false. In this sense, quasi indexicals are like pure indexicals (think: “I am a doctor”/“I am not a (...)
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  30. Making Ecological Values Make Sense: Toward More Operationalizable Ecological Legislation.Justin Donhauser - 2016 - Ethics and the Environment 21 (2):1-25.
    Value claims about ecological entities, their functionality, and properties take center stage in so-called “ecological” ethical and aesthetic theories. For example, the claim that the biodiversity in an old-growth forest imbues it with “value in and for itself” is an explicit value claim about an ecological property. And the claim that one can study “the aesthetics of nature, including natural objects...such as ecosystems” presupposes that natural instances of a type of ecological entity exist and can be regarded as more or (...)
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  31. Explaining Causal Closure.Justin Tiehen - 2015 - Philosophical Studies 172 (9):2405-2425.
    The physical realm is causally closed, according to physicalists like me. But why is it causally closed, what metaphysically explains causal closure? I argue that reductive physicalists are committed to one explanation of causal closure to the exclusion of any independent explanation, and that as a result, they must give up on using a causal argument to attack mind–body dualism. Reductive physicalists should view dualism in much the way that we view the hypothesis that unicorns exist, or that the Kansas (...)
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  32. Do Constancy Mechanisms Save Distal Content?Justin Garson - 2019 - Philosophical Quarterly 69 (275):409-417.
    In this journal, Schulte develops a novel solution to the problem of distal content: by virtue of what is a mental representation about a distal object rather than a more proximal cause of that representation? Schulte maintains that in order for a representation to have a distal content, it must be produced by a constancy mechanism, along with two other conditions. I raise three objections to his solution. First, a core component of Schulte's solution is just a restrictive version of (...)
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  33. Scepticism About the Argument From Divine Hiddenness.Justin P. Mcbrayer & Philip Swenson - 2012 - Religious Studies 48 (2):129 - 150.
    Some philosophers have argued that the paucity of evidence for theism — along with basic assumptions about God's nature — is ipso facto evidence for atheism. The resulting argument has come to be known as the argument from divine hiddenness. Theists have challenged both the major and minor premises of the argument by offering defences. However, all of the major, contemporary defences are failures. What unites these failures is instructive: each is implausible given other commitments shared by everyone in the (...)
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  34. Contrastive Reasons and Promotion.Justin Snedegar - 2014 - Ethics 125 (1):39-63,.
    A promising but underexplored view about normative reasons is contrastivism, which holds that considerations are fundamentally reasons for things only relative to sets of alternatives. Contrastivism gains an advantage over non-contrastive theories by holding that reasons relative to different sets of alternatives can be independent of one another. But this feature also raises a serious problem: we need some way of constraining this independence. I develop a version of contrastivism that provides the needed constraints, and that is independently motivated by (...)
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  35. Division, Syllogistic, and Science in Prior Analytics I.31.Justin Vlasits - forthcoming - Ergo: An Open Access Journal of Philosophy.
    In the first book of the Prior Analytics, Aristotle sets out, for the first time in Greek philosophy, a logical system. It consists of a deductive system (I.4-22), meta-logical results (I.23-26), and a method for finding and giving deductions (I.27-29) that can apply in “any art or science whatsoever” (I.30). After this, Aristotle compares this method with Plato’s method of division, a procedure designed to find essences of natural kinds through systematic classification. This critical comparison in APr I.31 raises an (...)
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  36. Should CSR Give Atheists Epistemic Assurance? On Beer-Goggles, BFFs, and Skepticism Regarding Religious Beliefs.Justin L. Barrett & Ian M. Church - 2013 - The Monist 96 (3):311-324.
    Recent work in cognitive science of religion (CSR) is beginning to converge on a very interesting thesis—that, given the ordinary features of human minds operating in typical human environments, we are naturally disposed to believe in the existence of gods, among other religious ideas (e.g., seeAtran [2002], Barrett [2004; 2012], Bering [2011], Boyer [2001], Guthrie [1993], McCauley [2011], Pyysiäinen [2004; 2009]). In this paper, we explore whether such a discovery ultimately helps or hurts the atheist position—whether, for example, it lends (...)
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  37. Mereology in Aristotle's Assertoric Syllogistic.Justin Vlasits - 2019 - History and Philosophy of Logic 40 (1):1-11.
    How does Aristotle think about sentences like ‘Every x is y’ in the Prior Analytics? A recently popular answer conceives of these sentences as expressing a mereological relationship between x and y: the sentence is true just in case x is, in some sense, a part of y. I argue that the motivations for this interpretation have so far not been compelling. I provide a new justification for the mereological interpretation. First, I prove a very general algebraic soundness and completeness (...)
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  38. Reason Claims and Contrastivism About Reasons.Justin Snedegar - 2013 - Philosophical Studies 166 (2):231-242.
    Contrastivism about reasons is the view that ‘reason’ expresses a relation with an argument place for a set of alternatives. This is in opposition to a more traditional theory on which reasons are reasons for things simpliciter. I argue that contrastivism provides a solution to a puzzle involving reason claims that explicitly employ ‘rather than’. Contrastivism solves the puzzle by allowing that some fact might be a reason for an action out of one set of alternatives without being a reason (...)
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  39. Edmond Goblot’s (1858–1935) Selected Effects Theory of Function: A Reappraisal.Justin Garson - 2021 - Philosophy of Science 88 (5):1210-1220.
    At the beginning of the twentieth century, the French philosopher of science Edmond Goblot wrote three prescient papers on function and teleology. He advanced the remarkable thesis that functions are, as a matter of conceptual analysis, selected effects. He also argued that “selection” must be understood broadly to include both evolutionary natural selection and intelligent design. Here, I do three things. First, I give an overview of Goblot’s thought. Second, I identify his core thesis about function. Third, I argue that, (...)
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  40. A New Evolutionary Debunking Argument Against Moral Realism.Justin Morton - 2016 - Journal of the American Philosophical Association 2 (2):233-253.
    Evolutionary debunking arguments claim that evolution has influenced our moral faculties in such a way that, if moral realism is true, then we have no positive moral knowledge. I present several popular objections to the standard version of this argument, then give a new EDA that has clear advantages in responding to these objections. Whereas the Standard EDA argues that evolution has selected for many moral beliefs with certain contents, this New EDA claims that evolution has selected for one belief: (...)
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  41. Putting History Back Into Mechanisms.Justin Garson - forthcoming - British Journal for the Philosophy of Science.
    Mechanisms, in the prominent biological sense of the term, are historical entities. That is, whether or not something is a mechanism for something depends on its history. Put differently, while your spontaneously-generated molecule-for-molecule double has a heart, and its heart pumps blood around its body, its heart does not have a mechanism for pumping, since it does not have the right history. My argument for this claim is that mechanisms have proper functions; proper functions are historical entities; so, mechanisms are (...)
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  42. Power, Bargaining, and Collaboration.Justin Bruner & Cailin O'Connor - 2016 - In T. Boyer, C. Mayo-Wilson & M. Weisberg (eds.), Scientific Collaboration and Collective Knowledge.
    Collaboration is increasingly popular across academia. Collaborative work raises certain ethical questions, however. How will the fruits of collaboration be divided? How will the work for the collaborative project be split? In this paper, we consider the following question in particular. Are there ways in which these divisions systematically disadvantage certain groups? -/- We use evolutionary game theoretic models to address this question. First, we discuss results from O'Connor and Bruner (unpublished). In this paper, we show that underrepresented groups in (...)
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  43. Against Organizational Functions.Justin Garson - 2017 - Philosophy of Science 84 (5):1093-1103.
    Over the last 20 years, several philosophers have developed a new approach to biological functions, the organizational approach. This is not a single theory but a family of theories based on the idea that a trait token can acquire a function by virtue of the way it contributes to a complex, organized system and thereby to its own continued persistence as a token. I argue that the organizational approach faces a serious liberality objection. I examine three different ways organizational theorists (...)
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  44. Two Puzzles Concerning Spinoza's Conception of Belief.Justin Steinberg - 2018 - European Journal of Philosophy 26 (1):261-282.
    Spinoza's account of belief entails that if A has two ideas, p and q, with incompatible content, A believes that p if the idea of p is stronger than the idea of q. This seems to leave little space for dominant non-beliefs, or cases in which there is discord between one's beliefs and one's affective-behavioral responses. And yet Spinoza does allow for two classes of dominant non-beliefs: efficacious fictions [fictiones] and ideas that conduce to akrasia. I show how Spinoza can (...)
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  45. Function and Teleology.Justin Garson - 2008 - In Anya Plutynski & Sahotra Sarkar (eds.), A Companion to the Philosophy of Biology. Malden, MA: Blackwell. pp. 525-549.
    This is a short overview of the biological functions debate in philosophy. While it was fairly comprehensive when it was written, my short book ​A Critical Overview of Biological Functions has largely supplanted it as a definitive and up-to-date overview of the debate, both because the book takes into account new developments since then, and because the length of the book allowed me to go into substantially more detail about existing views.
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  46. Disjunctive Antecedent Conditionals.Justin Khoo - 2018 - Synthese 198 (8):7401-7430.
    Disjunctive antecedent conditionals —conditionals of the form if A or B, C—sometimes seem to entail both of their simplifications and sometimes seem not to. I argue that this behavior reveals a genuine ambiguity in DACs. Along the way, I discuss a new observation about the role of focal stress in distinguishing the two interpretations of DACs. I propose a new theory, according to which the surface form of a DAC underdetermines its logical form: on one possible logical form, if A (...)
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  47. How to Solve the Problem of Evil: A Deontological Strategy.Justin Mooney - 2019 - Faith and Philosophy 36 (4):442-462.
    One paradigmatic argument from evil against theism claims that, (1) if God exists, then there is no gratuitous evil. But (2) there is gratuitous evil, so (3) God does not exist. I consider three deontological strategies for resisting this argument. Each strategy restructures existing theodicies which deny (2) so that they instead deny (1). The first two strategies are problematic on their own, but their primary weaknesses vanish when they are combined to form the third strategy, resulting in a promising (...)
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  48. New Horizons for a Theory of Epistemic Modals.Justin Khoo & Jonathan Phillips - 2019 - Australasian Journal of Philosophy 97 (2):309-324.
    ABSTRACTRecent debate over the semantics and pragmatics of epistemic modals has focused on intuitions about cross-contextual truth-value assessments. In this paper, we advocate a different approach to evaluating theories of epistemic modals. Our strategy focuses on judgments of the incompatibility of two different epistemic possibility claims, or two different truth value assessments of a single epistemic possibility claim. We subject the predictions of existing theories to empirical scrutiny, and argue that existing contextualist and relativist theories are unable to account for (...)
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  49. The Introduction of Information Into Neurobiology.Justin Garson - 2003 - Philosophy of Science 70 (5):926-936.
    The first use of the term "information" to describe the content of nervous impulse occurs 20 years prior to Shannon`s (1948) work, in Edgar Adrian`s The Basis of Sensation (1928). Although, at least throughout the 1920s and early 30s, the term "information" does not appear in Adrian`s scientific writings to describe the content of nervous impulse, the notion that the structure of nervous impulse constitutes a type of message subject to certain constraints plays an important role in all of his (...)
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  50. A New Logical Problem for the Doctrine of the Trinity.Justin Mooney - 2018 - Religious Studies 54 (1):1-13.
    In this article I develop a new problem for the doctrine of the Trinity that I call the Problem of Triunity. Rather than proceeding from the fact that God is one and the persons are many, as the traditional problem of the Trinity does, the problem of triunity proceeds from the fact that, in one sense or another, God is many, and yet each divine person on his own is just one.
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