The main purpose of the paper is to outline the formal-logical, general theory of language treated as a particular ontological being. The theory itself is called the ontology of language, because it is motivated by the fact that the language plays a special role: it reflects ontology and ontology reflects the world. Language expressions are considered to have a dual ontological status. They are understood as either concretes, that is tokens – material, physical objects, or types – classes (...) of tokens, which are abstract objects. Such a duality is taken into account in the presented logical theory of syntax, semantics and pragmatics. We point to the possibility of building it on two different levels; one which stems from concretes, language tokens of expressions, whereas the other one – from their classes, types conceived as abstract, ideal beings. The aim of this work is not only to outline this theory as taking into account the functional approach to language, with respect to the dual ontological nature of its expressions, but also to show that the logic based on it is ontologically neutral in the sense that it abstracts from accepting some existential assumptions, related with the ontological nature of these linguistic expressions and their extra-linguistic ontological counterparts (objects). (shrink)

Ontology is currently perceived as the solution of first resort for all problems related to biomedical terminology, and the use of description logics is seen as a minimal requirement on adequate ontology-based systems. Contrary to common conceptions, however, description logics alone are not able to prevent incorrect representations; this is because they do not come with a theory indicating what is computed by using them, just as classical arithmetic does not tell us anything about the entities that are added or (...) subtracted. In this paper we shall show that ontology is indeed an essential part of any solution to the problems of medical terminology – but only if it is understood in the right sort of way. Ontological engineering, we shall argue, should in every case go hand in hand with a sound ontological theory. (shrink)

We show that logic has more to offer to ontologists than standard first order and modal operators. We first describe some operators of linear logic which we believe are particularly suitable for ontological modeling, and suggest how to interpret them within an ontological framework. After showing how they can coexist with those of classical logic, we analyze three notions of artifact from the literature to conclude that these linear operators allow for reducing the ontological (...) commitment needed for their formalization, and even simplify their logical formulation. (shrink)

This work aims to make tense logic a more robust tool for ontologists, philosophers, knowledge engineers and programmers by outlining a fusion of tense logic and ontology of time. In order to make tense logic better understandable, the central formal primitives of standard tense logic are derived as theorems from an informal and intuitive ontology of time. In order to make formulation of temporal propositions easier, temporal operators that were introduced by Georg Henrik von Wright are (...) developed, and mapped to the ontology of time. (shrink)

The book is a collection of papers and aims to unify the questions of syntax and semantics of language, which are included in logic, philosophy and ontology of language. The leading motif of the presented selection of works is the differentiation between linguistic tokens (material, concrete objects) and linguistic types (ideal, abstract objects) following two philosophical trends: nominalism (concretism) and Platonizing version of realism. The opening article under the title “The Dual Ontological Nature of Language Signs and the (...) Problem of Their Mutual Relations” provides a broad introduction into the problem area connected with this differentiation, while the logic-formal characteristics of the distinction are framed in the work entitled “On the Type-Token Relationships” (Chapter 1). The basic part of the book deals with issues relating to syntax (Chapters 2-4) and semantics of language (Chapters 5-6), as well as pertaining to syntactic-semantic pragmatic questions (Chapters 7-13). Throughout the book, language, categorial language, is characterized syntactically as generated by classical categorial grammar (Chapter 2) and formalized on two opposing levels: as language of expression-tokens (level of tokens) and language of expression-types (level of types). The author’s considerations contained in Chapters 2 and 4 lead to the important philosophical conclusion that in formal-logical syntactic studies on language the assumption that expression-types constitute the primary language layer while expression-tokens make the secondary one, can be neglected; thus, this speaks in favour of the opposing standpoint—the concretistic one—in the ontology of language syntax. In the works “Meaning and Interpretations”, Parts I and II (Chapters 5 and 6), it is underlined, however, that such semantic concepts as: meaning, denotation and interpretation are defined on the types level, yet their formal definitions require making use of notions of the tokens level. The semantic notions introduced in the above-mentioned articles are also used in the following works of the present selection, under the titles: “Three Principles of Compositionality” and “On Metaknowledge and Truth” (Chapters 7 and 8). They formalize two principles of compositionality that are well known in the literature on the subject, deriving from Frege, i.e. those of meaning and of denotation; they are related to the syntactic principle of compositionality which was introduced by the author. All the three principles are, at the same time, three conditions of homomorphism of categorial language algebra into three kinds of non-standard models of language (one syntactic and two semantic ones: intensional and extensional), which allows introducing three definitions of truthfulness into these models. The next two works in the collection, entitled: “On Language Adequacy” and “What is the Sense in Logic and Philosophy of Language” (Chapters 9 and 10) concern adequacy of categorial language syntax along with its dual semantics: intensional and extensional, and categorial compatibility of any of its syntactic categories with two corresponding semantic categories: intensional and extensional, based on the compatibility the syntactic category of each language expression with the ontological category assigned to its denotatum. The well-known problem of categorial compatibility for first-order quantifiers finds its solution in the paper “Categories of First-Order Quantifiers” (Chapter 11). In the work “Logic and Ontology of Language” (Chapter 12), being in a sense a summary of the considerations presented in the preceding chapters of the book, language is treated as an ontological being, characterized in compliance with the logical conception of language proposed by Ajdukiewicz. Application—like throughout the book—of tools of classical logic and set theory has resulted in emergence of a general formal logical theory of syntax, semantics and pragmatics of language, which takes into account duality in the understanding of linguistic expressions as tokens (concretes) and types (abstract objects). In terms that take into account a functional approach to language itself, there comes out an ontological neutrality of logic with respect to existential assumptions relating to the ontological nature of linguistic expressions and their extra-linguistic ontological counterparts. The issues connected with applying logic while explaining the manner of using linguistic tokens and linguistic types to determine notions of language communication are raised and illustrated in the last chapter of the work, bearing the title “A Logical Conceptualization of Knowledge on the Notion of Language Communication”. (shrink)

The current resurgence of interest in cognition and in the nature of cognitive processing has brought with it also a renewed interest in the early work of Husserl, which contains one of the most sustained attempts to come to grips with the problems of logic from a cognitive point of view. Logic, for Husserl, is a theory of science; but it is a theory which takes seriously the idea that scientific theories are constituted by the mental acts of (...) cognitive subjects. The present essay begins with an exposition of Husserl's act-based conception of what a science is, and goes on to consider his account of the role of linguistic meanings, of the ontology of scientific objects, and of evidence and truth. The essay concentrates almost exclusively on the Logical Investigations of 1900/01. This is not only because this work, which is surely Husserl's single most important masterpiece, has been overshadowed first of all by his Ideas I and then later by the Crisis. It is also because the Investigations contain, in a peculiarly clear and pregnant form, a whole panoply of ideas on logic and cognitive theory which either simply disappeared in Husserl's own later writings or became obfuscated by an admixture of that great mystery which is 'transcendental phenomenology'. (shrink)

In this paper I sketch some arguments that underlie Hegel's chapter on judgment, and I attempt to place them within a broad tradition in the history of logic. Focusing on his analysis of simple predicative assertions or ‘positive judgments’, I first argue that Hegel supplies an instructive alternative to the classical technique of existential quantification. The main advantage of his theory lies in his treatment of the ontological implications of judgments, implications that are inadequately captured by quantification. The (...) second concern of this paper is the manner in which Hegel makes logic not only dependent on ontology generally, but also variant in regard to domains of objects. In other words, he offers a domain-specific logical theory, according to which the form of judgment or inference is specific to the subject of judgment. My third concern lies with the metaphilosophical consequences of this theory, and this includes some more familiar Hegelian themes. It is well known that Hegel frequently questioned the adequacy of the sentential form for expressing higher order truths. My reading of his theory of predication explains and contextualizes this tendency by demystifying notions like the so-called speculative proposition. (shrink)

Abstract. As a general theory of reasoning—and as a general theory of what holds true under every possible circumstance—logic is supposed to be ontologically neutral. It ought to have nothing to do with questions concerning what there is, or whether there is anything at all. It is for this reason that traditional Aristotelian logic, with its tacit existential presuppositions, was eventually deemed inadequate as a canon of pure logic. And it is for this reason that modern quantification (...) theory, too, with its residue of existentially loaded theorems and patterns of inference, has been claimed to suffer from a defect of logical purity. The law of non-contradiction rules out certain circumstances as impossible—circumstances in which a statement is both true and false, or perhaps circumstances where something both is and is not the case. Is this to be regarded as a further ontological bias? (shrink)

In this paper we begin categorizing a plurality of possible worlds on the basis of permitting or not permitting ontologically different things to be causally connected. We build the work on the dual principle that all universes are causally closed either because no universe causes anything outside itself or because no universe has anything in it that is caused by another universe.

Simple partial logic (=SPL) is, broadly speaking, an extensional logic which allows for the truth-value gap. First I give a system of propositional SPL by partializing classical logic, as well as extending it with several non-classical truth-functional operators. Second I show a way based on SPL to construct a system of tensed ontology, by representing tensed statements as two kinds of necessary statements in a linear model that consists of the present and future worlds. Finally I compare (...) that way with other two ways based on Łukasiewicz’s three-valued logic and branching temporal logic. (shrink)

Despite the efforts undertaken to separate scientific reasoning and metaphysical considerations, despite the rigor of construction of mathematics, these are not, in their very foundations, independent of the modalities, of the laws of representation of the world. The OdC shows that the logical Facts Exist neither more nor less than the Facts of the world which are Facts of Knowledge. Mathematical facts are representation facts. The primary objective of this article is to integrate the subject into mathematics as a mode (...) of emergence of meaning and then to evaluate its consequences. (shrink)

A collection of material on Husserl's Logical Investigations, and specifically on Husserl's formal theory of parts, wholes and dependence and its influence in ontology, logic and psychology. Includes translations of classic works by Adolf Reinach and Eugenie Ginsberg, as well as original contributions by Wolfgang Künne, Kevin Mulligan, Gilbert Null, Barry Smith, Peter M. Simons, Roger A. Simons and Dallas Willard. Documents work on Husserl's ontology arising out of early meetings of the Seminar for Austro-German Philosophy.

The suggestion of Logical Quanta (LQ) is a bidirectional synthesis of the theory of logos of Maximus the Confessor and the philosophical interpretation of quantum mechanics. The result of such a synthesis is enrichment to the ontology of classical mechanics that enable us to have a unified view and an explanatory frame of the whole cosmos. It also enables us to overcome the Cartesian duality both on biology and the interaction of body and mind. Finally, one can reconstruct a new (...) understanding of religion. (shrink)

We discuss the philosophical implications of formal results showing the con- sequences of adding the epsilon operator to intuitionistic predicate logic. These results are related to Diaconescu’s theorem, a result originating in topos theory that, translated to constructive set theory, says that the axiom of choice (an “existence principle”) implies the law of excluded middle (which purports to be a logical principle). As a logical choice principle, epsilon allows us to translate that result to a logical setting, where one (...) can get an analogue of Diaconescu’s result, but also can disentangle the roles of certain other assumptions that are hidden in mathematical presentations. It is our view that these results have not received the attention they deserve: logicians are unlikely to read a discussion because the results considered are “already well known,” while the results are simultaneously unknown to philosophers who do not specialize in what most philosophers will regard as esoteric logics. This is a problem, since these results have important implications for and promise signif i cant illumination of contem- porary debates in metaphysics. The point of this paper is to make the nature of the results clear in a way accessible to philosophers who do not specialize in logic, and in a way that makes clear their implications for contemporary philo- sophical discussions. To make the latter point, we will focus on Dummettian discussions of realism and anti-realism. Keywords: epsilon, axiom of choice, metaphysics, intuitionistic logic, Dummett, realism, antirealism. (shrink)

Ezumezu, a prototype African logic, developed by Jonathan Chimakonam as a framework which mediates thought, theory and method in the African place, is according to him, extendable and applicable in places non-African too. This seems to underscore the universal character of the logic. I interrogate, in this piece, the logic to see if it truly mediates thought, theory and method in Yorùbá ontology on the one hand, and process ontology on the other hand. Through critical analysis, I (...) discern that each of these thought systems operate beyond the principles of classical logic and this is one of the factors that have vitiated their appreciation and comprehension. Upon critical reflection, however, these thought systems seem to follow the principles of Ezumezu logic hence my aim – to disclose how the logic undergirds theory and method for each of those systems. Keywords: African Philosophy, Ezumezu Logic, Jonathan Chimakonam, Process Ontology, Yorùbá Ontology. (shrink)

Giving justice to Maximus any philosophy wich does not include mysticism will be false as philosophy. Our metaphysics must be mystical in order to be rational. In Maximus’ doctrine, then, Christ comes not to destroy but to fulfill the metaphysics of mystery elaborated by the philosophers. For him there can be no separation between philosophy and theology, or between natural and revealed theology. Thereby, Christology and liturgical mysticism are not additional to a neoplatonic, aristotelian, and other methaphysics. Maximus concern was (...) to continue, not the philosophical tradition of the Aristotelian commentators, but the theological one of the Fathers. He was not an Aristotelian commentator himself. The union and distinction are basic logical concepts in Maximus’ thinking, but the Chalcedonian logic is the application of these concepts. Only in this way one can talk about Christianization of aristotelian logic. St. Maximus the Confessor synthesized Aristotelianism influences with those of Platonism in order to exceed the daring speculations of cosmology origeniene. He had an extraordinary ability to combine metaphysical requirements with the effort of defining the faith dogma, and the monastic experiences with the depth thinking, succeeding to propose a new conception in which converge all cultural and religious influences. This study is analyzing the relationship between logoi and energeia (the intentional or “logical” energeia and the ontology of divine energy as ontological “logic”) within the maximian cosmology, by referring to the palamite theology. The concept of logoi for St. Maximus play a role similar in many respects to that of energy (energeiai) in Cappadocian Fathers, but the functional similarity it should not lead to the identification rationales with the energies. (shrink)

Ontology as a branch of philosophy is the science of what is, of the kinds and structures of objects, properties, events, processes and relations in every area of reality. ‘Ontology’ is often used by philosophers as a synonym for ‘metaphysics’ (literally: ‘what comes after the Physics’), a term which was used by early students of Aristotle to refer to what Aristotle himself called ‘first philosophy’. The term ‘ontology’ (or ontologia) was itself coined in 1613, independently, by two philosophers, Rudolf Göckel (...) (Goclenius), in his Lexicon philosophicum and Jacob Lorhard (Lorhardus), in his Theatrum philosophicum. The first occurrence in English recorded by the OED appears in Bailey’s dictionary of 1721, which defines ontology as ‘an Account of being in the Abstract’. (shrink)

This paper is partly inspired by a well-known debate between Ruth Barcan Marcus, Terence Parsons and W. V. 0. Quine in the sixties> concerning the extent to which Quantified Modal Logic is committed to Essentialism; the issue nevertheless goes back to the origins of "analytic philosophy'', to the reflections of Frege, Russell, and the earlier Wittgenstein on the nature of logic. By elaborating on a suggestion by Quine, we purport to show that there is a relevant and interesting (...) way to look at the ontological commitments of logical systems such that they are stronger than they are usually taken to be. (shrink)

According to the truth-functional analysis of conditions, to be ‘necessary for’ and ‘sufficient for’ are converse relations. From this, it follows that to be ‘necessary and sufficient for’ is a symmetric relation, that is, that if P is a necessary and sufficient condition for Q, then Q is a necessary and sufficient condition for P. This view is contrary to common sense. In this paper, I point out that it is also contrary to a widely accepted ontological view of (...) conditions, according to which if P is a necessary and sufficient condition for Q, then Q is in no sense a condition for P; it is a mere consequence of P. (shrink)

In two recent papers, Bob Hale has attempted to free second-order logic of the 'staggering existential assumptions' with which Quine famously attempted to saddle it. I argue, first, that the ontological issue is at best secondary: the crucial issue about second-order logic, at least for a neo-logicist, is epistemological. I then argue that neither Crispin Wright's attempt to characterize a `neutralist' conception of quantification that is wholly independent of existential commitment, nor Hale's attempt to characterize the second-order (...) domain in terms of definability, can serve a neo-logicist's purposes. The problem, in both cases, is similar: neither Wright nor Hale is sufficiently sensitive to the demands that impredicativity imposes. Finally, I defend my own earlier attempt to finesse this issue, in "A Logic for Frege's Theorem", from Hale's criticisms. (shrink)

We present some ideas on logical process descriptions, using relations from the DIO (Drug Interaction Ontology) as examples and explaining how these relations can be naturally decomposed in terms of more basic structured logical process descriptions using terms from linear logic. In our view, the process descriptions are able to clarify the usual relational descriptions of DIO. In particular, we discuss the use of logical process descriptions in proving linear logical theorems. Among the types of reasoning supported by DIO (...) one can distinguish both (1) basic reasoning about general structures in reality and (2) the domain-specific reasoning of experts. We here propose a clarification of this important distinction between (realist) reasoning on the basis of an ontology and rule-based inferences on the basis of an expert’s view. (shrink)

Monism is the claim that only one object exists. While few contemporary philosophers endorse monism, it has an illustrious history – stretching back to Bradley, Spinoza and Parmenides. In this paper, I show that plausible assumptions about the higher-order logic of property identity entail that monism is true. Given the higher-order framework I operate in, this argument generalizes: it is also possible to establish that there is a single property, proposition, relation, etc. I then show why this form of (...) monism is inconsistent; because all propositions are identical, p is identical to ~p – and so they have the same truth-value. At least one of the assumptions that generate higher-order monism must be rejected. (shrink)

Abstract: We propose a dichotomy between object-entities and meaning-entities. The former are entities such as molecules, cells, organisms, organizations, numbers, shapes, and so forth. The latter are entities such as concepts, propositions, and theories belonging to the realm of logic. Frege distinguished analogously between a ‘realm of reference’ and a ‘realm of sense’, which he presented in some passages as mutually exclusive. This however contradicts his assumption elsewhere that every entity is a referent (even Fregean senses can be referred (...) to by means of suitably constructed expressions). We apply the meaning/object dichotomy to mathematical and fictional entities, and develop a view of mathematical and other abstract objects as the results of certain types of demarcation – as for example the North Sea is the result of demarcations built into naval charts. Such demarcations reflect demarcatory acts, which presuppose complex cognitive and social structures enabling the creation of maps, of theories (of mathematics, of natural science), and of novels. (shrink)

In this paper, the authors show that there is a reading of St. Anselm's ontological argument in Proslogium II that is logically valid (the premises entail the conclusion). This reading takes Anselm's use of the definite description "that than which nothing greater can be conceived" seriously. Consider a first-order language and logic in which definite descriptions are genuine terms, and in which the quantified sentence "there is an x such that..." does not imply "x exists". Then, using an (...) ordinary logic of descriptions and a connected greater-than relation, God's existence logically follows from the claims: (a) there is a conceivable thing than which nothing greater is conceivable, and (b) if <em>x</em> doesn't exist, something greater than x can be conceived. To deny the conclusion, one must deny one of the premises. However, the argument involves no modal inferences and, interestingly, Descartes' ontological argument can be derived from it. (shrink)

The identity "relation" is misconceived since the syntax of "=" is misconceived as a relative term. Actually, "=" is syncategorematic; it forms (true) sentences with a nonpredicative syntax from pairs of (coreferring) flanking names, much as "&" forms (true) conjunctive sentences from pairs of (true) flanking sentences. In the conaming structure, nothing is predicated of the subject, other than, implicitly, its being so conamed. An identity sentence has both an objectual reading as a necessity about what is named, and also (...) a metalinguistic reading as a contingency about the names. Either way the claim about the subject referent has no extralinguistic content. The necessity of alteridentity (non-self-identity) statements is "lexical", due to contingencies of the names' reference, much like the necessity of analytic statements, due to contingencies of the predicates' sense, and unlike the necessity of logical truths (e.g., self-identities) whose truth is secured by syntax alone. Both alter-identity and analytic sentences are readable as objectual necessities and metalinguistic contingencies. Epistemically, alter-identity statements are not essentially unlike analyticities. "Greece is Hellas"/"g=h" and "Greeks are Hellenes"/"(x)(Gx<=>Hx)" are equally (un)informative; so too for "Azure is cobalt"/"a=c" and "Everything azure is cobalt"/"(x)(Ax<=>Cx)". The real epistemic contrast is between proper names (terms without predicative sense) and terms with a predicative sense (names and predicates of properties). Proper names refer to concrete objects, property names refer to abstract objects. That contrast is metaphysical and thus epistemic. (shrink)

A picture of the world as chiefly one of discrete objects, distributed in space and time, has sometimes seemed compelling. It is however one of the main targets of Henry Laycock's book; for it is seriously incomplete. The picture, he argues, leaves no space for "stuff" like air and water. With discrete objects, we may always ask "how many?," but with stuff the question has to be "how much?" Laycock's fascinating exploration also addresses key logical and linguistic questions about the (...) way we categorize the many and the much. (shrink)

he general theme of this paper is the issue of formalization in philosophy; in a more specific way, it deals with the issue of formalization of arguments in analytic philosophy of religion. One argument in particular – Anselm’s Proslogion II ontological argument – and one specific attempt to formalize it – Robert Adams’ formalization found in his paper “The Logical Structure of Anselm’s Arguments”, published in The Philosophical Review in 1971 – are taken as study cases. The purpose of (...) the paper is to critically analyze Adams’ formalization with the intent to shed some light on the following questions: What are the virtues of formally analyzing arguments and the contributions, if any, of such an enterprise to the debate on Anselm’s argument? Which lessons can Adam’s work teach us about the dangers and limitations of formalization? Do these virtues and dangers teach us something about analysis of arguments in general? (shrink)

The contemporary versions of the ontological argument that originated from Charles Hartshorne are formalized proofs based on unique modal theories. The simplest well-known theory of this kind arises from the b system of modal logic by adding two extra-logical axioms: “If the perfect being exists, then it necessarily exists‘ and “It is possible that the perfect being exists‘. In the paper a similar argument is presented, however none of the systems of modal logic is relevant to it. (...) Its only premises are the axiom and, instead of, the new axiom : “If the perfect being doesn’t exist, it necessarily doesn’t‘. The main goal of the work is to prove that is no more controversial than and -- in consequence -- the whole strength of the modal ontological argument lies in the set of its extra-logical premises. In order to do that, three arguments are formulated: ontological, “cosmological‘ and metalogical. (shrink)

Basic Formal Ontology (BFO) is a top-level ontology used in hundreds of active projects in scientific and other domains. BFO has been selected to serve as top-level ontology in the Industrial Ontologies Foundry (IOF), an initiative to create a suite of ontologies to support digital manufacturing on the part of representatives from a number of branches of the advanced manufacturing industries. We here present a first draft set of axioms and definitions of an IOF upper ontology descending from BFO. The (...) axiomatization is designed to capture the meanings of terms commonly used in manufacturing and is designed to serve as starting point for the construction of the IOF ontology suite. (shrink)

The beauty of Anselm’s ontological argument is, I believe, that no matter how one approaches it, one cannot refute it without making a significant metaphysical assumption, one that is likely to be contentious in its own right. Peter Millican disagrees. He introduces an objection according to which one can refute the argument merely by analysing its shallow logical details, without making any significant metaphysical assumption. He maintains, moreover, that his objection does not depend on a specific reading of the (...) relevant Anselmian text; in fact, Millican claims that his objection is applicable to every version of the ontological argument. In this paper, I argue that millican’s objection does not succeed, because, contrary to what he says, in order to justify his objection he does have to make a deep metaphysical assumption and rely on a specific reading of Anselm’s text. (shrink)

In a first part, I defend that formal semantics can be used as a guide to ontological commitment. Thus, if one endorses an ontological view \(O\) and wants to interpret a formal language \(L\) , a thorough understanding of the relation between semantics and ontology will help us to construct a semantics for \(L\) in such a way that its ontological commitment will be in perfect accordance with \(O\) . Basically, that is what I call constructing formal (...) semantics from an ontological perspective. In the rest of the paper, I develop rigorously and put into practice such a method, especially concerning the interpretation of second-order quantification. I will define the notion of ontological framework: it is a set-theoretical structure from which one can construct semantics whose ontological commitments correspond exactly to a given ontological view. I will define five ontological frameworks corresponding respectively to: (i) predicate nominalism, (ii) resemblance nominalism, (iii) armstrongian realism, (iv) platonic realism, and (v) tropism. From those different frameworks, I will construct different semantics for first-order and second-order languages. Notably I will present different kinds of nominalist semantics for second-order languages, showing thus that we can perfectly quantify over properties and relations while being ontologically committed only to individuals. I will show in what extent those semantics differ from each other; it will make clear how the disagreements between the ontological views extend from ontology to logic, and thus why endorsing an ontological view should have an impact on the kind of logic one should use. (shrink)

In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is (...) of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies. (shrink)

Ontological pluralism is the view that there are different ways to exist. It is a position with deep roots in the history of philosophy, and in which there has been a recent resurgence of interest. In contemporary presentations, it is stated in terms of fundamental languages: as the view that such languages contain more than one quantifier. For example, one ranging over abstract objects, and another over concrete ones. A natural worry, however, is that the languages proposed by the (...) pluralist are mere notational variants of those proposed by the monist, in which case the debate between the two positions would not seem to be substantive. Jason Turner has given an ingenious response to this worry, in terms of a principle that he calls ‘logical realism’. This paper offers a counter-response on behalf of the ‘notationalist’. I argue that, properly applied, the principle of logical realism is no threat to the claim that the languages in question are notational variants. Indeed, there seems to be every reason to think that they are. (shrink)

Enterprise Risk Management involves the process of identification, evaluation, treatment, and communication regarding risks throughout the enterprise. To support the tasks associated with this process, several frameworks and modeling languages have been proposed, such as the Risk and Security Overlay (RSO) of ArchiMate. An ontological investigation of this artifact would reveal its adequacy, capabilities, and limitations w.r.t. the domain of risk and security. Based on that, a language redesign can be proposed as a refinement. Such analysis and redesign have (...) been executed for the risk elements of the RSO grounded in the Common Ontology of Value and Risk. The next step along this line of research is to address the following research problems: What would be the outcome of an ontological analysis of security-related elements of the RSO? That is, can we identify other semantic deficiencies in the RSO through an ontological analysis? Once such an analysis is provided, can we redesign the security elements of the RSO accordingly, in order to produce an improved artifact? Here, with the aid of the Reference Ontology for Security Engineering (ROSE) and the ontological theory of prevention behind it, we address the remaining gap by proceeding with an ontological analysis of the security-related constructs of the RSO. The outcome of this assessment is an ontology-based redesign of the ArchiMate language regarding security modeling. In a nutshell, we report the following contributions: (1) an ontological analysis of the RSO that identifies six limitations concerning security modeling; (2) because of the key role of the notion of prevention in security modeling, the introduction of the ontological theory of prevention in ArchiMate; (3) a well-founded redesign of security elements of ArchiMate; and (4) ontology-based security modeling patterns that are logical consequences of our proposal of redesign due to its underlying ontology of security. As a form of evaluation, we show that our proposal can describe risk treatment options, according to ISO 31000. Finally, besides presenting multiple examples, we proceed with a real-world illustrative application taken from the cybersecurity domain. (shrink)

A speculative exploration of the distinction between a relational formal ontology and a classical formal ontology for modelling phenomena in nature that exhibit relationally-mediated wholism, such as phenomena from quantum physics and biosemiotics. Whereas a classical formal ontology is based on mathematical objects and classes, a relational formal ontology is based on mathematical signs and categories. A relational formal ontology involves nodal networks (systems of constrained iterative processes) that are dynamically sustained through signalling. The nodal networks are hierarchically ordered and (...) exhibit characteristics of deep learning. (shrink)

The latest draft (posted 05/14/22) of this short, concise work of proof, theory, and metatheory provides summary meta-proofs and verification of the work and results presented in the Theory and Metatheory of Atemporal Primacy and Riemann, Metatheory, and Proof. In this version, several new and revised definitions of terms were added to subsection SS.1; and many corrected equations, theorems, metatheorems, proofs, and explanations are included in the main text. The body of the text is approximately 18 pages, with 3 sections; (...) 1, an Introduction (with a 108 page listing of key terms & definitions), sect. 2, the Results, sect. 3, Discussion (commentary & predictions), and sect. 4, Works Cited. As much as possible, the style is intended for readability and understanding by very bright children (with some interest & knowledge of maths, etc.) and very interested nonprofessionals. The results of this project also enable upgrades of number theory, set theory, proof theory, metamathematics, the foundations of science, and quantum mechanics theory (etc.). (shrink)

During the Transfiguration, the apostles on Tabor, “indeed saw the same grace of the Spirit which would later dwell in them”. The light of grace “illuminates from outside on those who worthily approached it and sent the illumination to the soul through the sensitive eyes; but today, because it is confounded with us and exists in us, it illuminates the soul from inward ”. The opposition between knowledge, which comes from outside - a human and purely symbolic knowledge - and (...) “intellectual” knowledge, which comes from within, Meyendorff says what it already exists at Pseudo-Dionysius: “For it is not from without that God stirs them toward the divine. Rather he does so via the intellect and from within and he willingly enlightens them with a ray that is pure and immaterial”. The assertions of the Calabrian philosopher about an “unique knowledge”, common both to the Christians and the Hellenes and pursuing the same goal, the hesychast theologian opposes the reality of the two knowledge, having two distinct purposes and based on two different instruments of perception: “Palamas admitted the authenticity of natural knowledge, however the latter is opposed to the revealed wisdom, that is why it does not provide, by itself, salvation”. Therefore, in the purified human intellect begins to shine of the Trinity light. Purity also depends on the return of the intellect to itself. In this way, we see how the true knowledge of God is an internal meeting or “inner retrieval” of the whole being of man. As well as in the Syrian mystic, on several occasions we have to make the distinction between the contemplative ways of knowledge: intellection illuminated by grace and spiritual vision without any conceptual or symbolic meaning. For example, Robert Beulay shows that, “The term of ‘intellection’ first of all, is employed by John of Dalyatha to be applied to operations caused by grace”. (shrink)

We describe a prototype ontology-driven information system (ODIS) that exploits what we call Portion of Reality (POR) representations. The system takes both sensor data and natural language text as inputs and composes on this basis logically structured POR assertions. The goal of our prototype is to represent both natural language and sensor data within a single framework that is able to support both axiomatic reasoning and computation. In addition, the framework should be capable of discovering and representing new kinds of (...) situations and thematic roles, (e.g., roles such as agent, patient and instrument), based on new compositions of existing representations. We applied our prototype in an intelligence analysis use case to test the hypothesis that a framework of this sort can produce usefully structured information from combined natural language and sensor data inputs. We further tested our hypothesis by adding an enhanced US Air Force ontology framework to our ODIS in order to (1) process a collection of sensor data, intel reports, and mission plans; (2) build composite POR representations from these data; and (3) machine analyze the fused results to infer mission threats. (shrink)

This is the published version of a talk on meta-ontology in a conference of a multidisciplinary research project on "logic and sensibility". It argues against univocalism about "existence" and for a variety of perspectivism.

This essay examines how, in the early twentieth century, ontological arguments were employed in the defense of metaphysical idealism. The idealists of the period tended to grant that ontological arguments defy our usual expectations in logic, and so they were less concerned with the formal properties of Anselmian arguments. They insisted, however, that ontological arguments are indispensable, and they argued that we can trust argumentation as such only if we presume that there is a valid (...) class='Hi'>ontological argument. In the first section I outline the history of this metalogical interpretation of the ontological argument. In the subsequent sections I explain how Royce and Collingwood each developed the argument, and how this impacted their respective conceptions of both logic and metaphysics. (shrink)

Ontological arguments like those of Gödel (1995) and Pruss (2009; 2012) rely on premises that initially seem plausible, but on closer scrutiny are not. The premises have modal import that is required for the arguments but is not immediately grasped on inspection, and which ultimately undermines the simpler logical intuitions that make the premises seem plausible. Furthermore, the notion of necessity that they involve goes unspecified, and yet must go beyond standard varieties of logical necessity. This leaves us little (...) reason to believe the premises, while their implausible existential import gives us good reason not to. (shrink)

The text “The Ontology of Knowledge, Logic, Arithmetic, Set Theory, and Geometry” by Jean-Louis Boucon explores a deeply philosophical interpretation of knowledge, its logical structure, and the foundational elements of mathematical and scientific reasoning. -/- Here’s an overview condensed by an AI of the key themes and ideas, summarized into a quite general conceptual structure. These two pages are instructive on their own, but their main purpose is to facilitate the reading of the entire article, allowing the reader to (...) situate in the coherence of the whole both the meaning and the usefulness of each proposed idea. (shrink)

Formal ontology as it is presented in Husserl`s Third Logical Investigation can be interpreted as a fundamental tool to describe objects in a formal sense. It is presented one of the main sources: chapter five of Carl Stumpf`s Ûber den psycholoogischen Ursprung der Raumovorstellung (1873), and then it is described how Husserlian Formal Ontology is applied in Fifth Logical Investigation. Finally, it is applied to dramatic structures, in the spirit of Roman Ingarden.

Description Logics are nowadays widely accepted as formalisms which provide reasoning facilities which allow us to discover inconsistencies in ontologies in an automatic fashion. Where ontologies are developed in modular fashion, they allow changes in one module to propogated through the system of ontologies automatically in a way which helps to maintain consistency and stability. For this feature to be utilized effectively, however, requires that domain ontologies be represented in a normalized form.

I this paper I give minimal axioms for the ontology of time, especially A-theories and B-theories and I derive philosophically interesting lemmas. The exercise is set-theoretical, defining all notions and indicating assumptions and philosophical points of disagreement, while being easy to translate to other formal expressions . The issue of a logic for A-theories of time is treated towards the end, where I sketch ‘copresent’ operators for capturing the idea of temporal passage. The main conclusion will be that, while (...) circularity threatens both families of theories, the growing block theory (belonging to the A-theory) is the least objectionable philosophically. (shrink)

Timothy Williamson has argued that in the debate on modal ontology, the familiar distinction between actualism and possibilism should be replaced by a distinction between positions he calls contingentism and necessitism. He has also argued in favor of necessitism, using results on quantified modal logic with plurally interpreted second-order quantifiers showing that necessitists can draw distinctions contingentists cannot draw. Some of these results are similar to well-known results on the relative expressivity of quantified modal logics with so-called inner and (...) outer quantifiers. The present paper deals with these issues in the context of quantified modal logics with generalized quantifiers. Its main aim is to establish two results for such a logic: Firstly, contingentists can draw the distinctions necessitists can draw if and only if the logic with inner quantifiers is at least as expressive as the logic with outer quantifiers, and necessitists can draw the distinctions contingentists can draw if and only if the logic with outer quantifiers is at least as expressive as the logic with inner quantifiers. Secondly, the former two items are the case if and only if all of the generalized quantifiers are first-order definable, and the latter two items are the case if and only if first-order logic with these generalized quantifiers relativizes. (shrink)

A close interrelationship between logic and religious faith is confirmed in many places of the Bible. In the paper, special attention is paid to the dialogue of Jesus and a Samaritan woman (John 4). In a proposed outline of a logical formalization, religious faith is described as a pragmatic function through which the linguistic and logical content is contextually realized. In the continuation of the paper, Gödel's ontological proof is commented, which in a logically rigorous way describes the (...) ontology where we can detect the systematic place of religious faith as an ontological force. (shrink)

It is no exaggeration to say that of the early 20th century German philosophers who claimed to establish a new ontology, former neo-Kantian turned realist Nicolai Hartmann is the only one to have actually followed through. "Ontology: Laying the Foundations" deals with "what is insofar as it is," and its four parts tackle traditional ontological assumptions and prejudices and traditional categories such as substance, thing, individual, whole, object, and phenomenon; a novel redefinition of existence and essence in terms of (...) the ontological factors Dasein and Sosein and their interrelations; an analysis of modes of "givenness" and the ontological embeddedness of cognition in affective transcendent acts; and a discussion of the status of ideal being, including mathematical being, phenomenological essences, logical laws, values, and the interconnections between the ideal and real spheres. Hartmann’s work offers rich resources for those interested in overcoming the human-centeredness of much 20th century philosophy. Hartmann’s work offers rich resources for those interested in overcoming the human-centeredness of much 20th century philosophy. (shrink)

Ontology is one strategy for promoting interoperability of heterogeneous data through consistent tagging. An ontology is a controlled structured vocabulary consisting of general terms (such as “cell” or “image” or “tissue” or “microscope”) that form the basis for such tagging. These terms are designed to represent the types of entities in the domain of reality that the ontology has been devised to capture; the terms are provided with logical defi nitions thereby also supporting reasoning over the tagged data. Aim: This (...) paper provides a survey of the biomedical imaging ontologies that have been developed thus far. It outlines the challenges, particularly faced by ontologies in the fields of histopathological imaging and image analysis, and suggests a strategy for addressing these challenges in the example domain of quantitative histopathology imaging. The ultimate goal is to support the multiscale understanding of disease that comes from using interoperable ontologies to integrate imaging data with clinical and genomics data. (shrink)

Ontology, since Aristotle, has been conceived as a sort of highly general physics, a science of the types of entities in reality, of the objects, properties, categories and relations which make up the world. At the same time ontology has been for some two thousand years a speculative enterprise. It has rested methodologically on introspection and on the construction and analysis of elaborate world-models and of abstract formal-ontological theories. In the work of Quine and others this ontological theorizing (...) in abstract fashion about the world was supplemented by the study, based on the use of logical methods, of the ontological commitments or presuppositions embodied in scientific theories. In recent years both types of ontological study have found application in the world of information systems, for example in the construction of frameworks for knowledge representation and in database design and translation. As ontology is in this way drawn closer to the domain of real-world applications, the question arises as to whether it is possible to use empirical methods in studying ontological theories. More specifically: can we use empirical methods to test the ontological theories embodied in human cognition? We set forth the outlines of a framework for the formulation and testing of such theories as they relate to the specific domain of geographic objects and categories. (shrink)