Results for 'structural ontology'

935 found
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  1. On the Question of the Place and Role of Language in the Process of Personality Socialization: Structural-Ontological Sketch.Vitalii Shymko - 2019 - Psycholinguistics 26 (1):385-400.
    Objective – is to formulate a methodological discourse regarding the place and role of the language interconnected with the process of socialization of a person and develop a systemic idea of the corresponding functional features. -/- Materials & Methods – this discourse is formulated on the basis of a systemic idea of the personality socialization, which, in turn, is realized using the structural-ontological method of studying the subject matter field in interdisciplinary researches. This method involves the construction of special (...)
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  2. Process structural realism, instance ontology, and societal order.Joseph Earley - 2008 - In Franz Riffert and Hans-Joachim Sander (ed.), Rearching with Whitehead: System and Adventure. Alber. pp. 190-211.
    Whitehead’s cosmology centers on the self-creation of actual occasions that perish as they come to be, but somehow do combine to constitute societies that are persistent agents and/or patients. “Instance Ontology” developed by D.W. Mertz concerns unification of relata into facts of relatedness by specific intensions. These two conceptual systems are similar in that they both avoid the substance-property distinction: they differ in their understanding of how basic units combine to constitute complex unities. “Process Structural Realism” (PSR) draws (...)
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  3. The Ontology of Quantum Field Theory: Structural Realism Vindicated?David Glick - 2016 - Studies in History and Philosophy of Science Part A 59:78-86.
    In this paper I elicit a prediction from structural realism and compare it, not to a historical case, but to a contemporary scientific theory. If structural realism is correct, then we should expect physics to develop theories that fail to provide an ontology of the sort sought by traditional realists. If structure alone is responsible for instrumental success, we should expect surplus ontology to be eliminated. Quantum field theory (QFT) provides the framework for some of the (...)
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  4. Spacetime, Ontology, and Structural Realism.Edward Slowik - 2005 - International Studies in the Philosophy of Science 19 (2):147 – 166.
    This essay explores the possibility of constructing a structural realist interpretation of spacetime theories that can resolve the ontological debate between substantivalists and relationists. Drawing on various structuralist approaches in the philosophy of mathematics, as well as on the theoretical complexities of general relativity, our investigation will reveal that a structuralist approach can be beneficial to the spacetime theorist as a means of deflating some of the ontological disputes regarding similarly structured spacetimes.
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  5. Ontologically significant aggregation: Process structural realism (PSR).Joseph E. Earley - 2008 - In Michel Weber and Will Desmond (ed.), Handbook of Whiteheadian Process Thought. De Gruyter. pp. 2--179.
    Combinations of molecules, of biological individuals, or of chemical processes can produce effects that are not simply attributable to the constituents. Such non-redundant causality warrants recognition of those coherences as ontologically significant whenever that efficacy is relevant. With respect to such interaction, the effective coherence is more real than are the components. This ontological view is a variety of structural realism and is also a kind of process philosophy. The designation ‘process structural realism’ (PSR) seems appropriate.
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  6. Primitive Ontology and the Structure of Fundamental Physical Theories.Valia Allori - 2013 - In Alyssa Ney & David Albert (eds.), The Wave Function: Essays in the Metaphysics of Quantum Mechanics. , US: Oxford University Press. pp. 58-75.
    For a long time it was believed that it was impossible to be realist about quantum mechanics. It took quite a while for the researchers in the foundations of physics, beginning with John Stuart Bell [Bell 1987], to convince others that such an alleged impossibility had no foundation. Nowadays there are several quantum theories that can be interpreted realistically, among which Bohmian mechanics, the GRW theory, and the many-worlds theory. The debate, though, is far from being over: in what respect (...)
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  7. Ontological Dependence, Spatial Location, and Part Structure.Friederike Moltmann - 2019 - In Roberta Ferrario, Stefano Borgo, Laure Vieu & Claudio Masolo (eds.), Festschrift for Nicola Guarino. Amsterdam: IOS Publications.
    This paper discusses attributively limited concrete objects such as disturbances (holes, folds, scratches etc), tropes, and attitudinal objects, which lack the sort of spatial location or part structures expected of them as concrete objects. The paper proposes an account in terms of (quasi-Fregean) abstraction, which has so far been applied only to abstract objects.
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  8. The Structure of Gunk: Adventures in the Ontology of Space.Jeffrey Sanford Russell - 2008 - In Dean Zimmerman (ed.), Oxford Studies in Metaphysics: Volume 4. Oxford University Press UK. pp. 248.
    Could space consist entirely of extended regions, without any regions shaped like points, lines, or surfaces? Peter Forrest and Frank Arntzenius have independently raised a paradox of size for space like this, drawing on a construction of Cantor’s. I present a new version of this argument and explore possible lines of response.
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  9. (1 other version)Dialectical-Ontological Modeling of Primordial Generating Process ↔ Understand λόγος ↔Δ↔Logos & Count Quickly↔Ontological (Cosmic, Structural) Memory.Vladimir Rogozhin - 2020 - Fqxi Essay Contest.
    Fundamental Science is undergoing an acute conceptual-paradigmatic crisis of philosophical foundations, manifested as a crisis of understanding, crisis of interpretation and representation, “loss of certainty”, “trouble with physics”, and a methodological crisis. Fundamental Science rested in the "first-beginning", "first-structure", in "cogito ergo sum". The modern crisis is not only a crisis of the philosophical foundations of Fundamental Science, but there is a comprehensive crisis of knowledge, transforming by the beginning of the 21st century into a planetary existential crisis, which has (...)
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  10. Actor Network, Ontic Structural Realism and the Ontological Status of Actants.Corrado Matta - 2014 - Proceedings of the 9th International Conference on Networked Learning 2014.
    In this paper I discuss the ontological status of actants. Actants are argued as being the basic constituting entities of networks in the framework of Actor Network Theory (Latour, 2007). I introduce two problems concerning actants that have been pointed out by Collin (2010). The first problem concerns the explanatory role of actants. According to Collin, actants cannot play the role of explanans of networks and products of the same newtork at the same time, at pain of circularity. The second (...)
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  11. The Protein Ontology: A structured representation of protein forms and complexes.Darren Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang & Cathy H. Wu - 2011 - Nucleic Acids Research 39 (1):D539-D545.
    The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of (...)
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  12. Protein Ontology: A controlled structured network of protein entities.A. Natale Darren, N. Arighi Cecilia, A. Blake Judith, J. Bult Carol, R. Christie Karen, Cowart Julie, D’Eustachio Peter, D. Diehl Alexander, J. Drabkin Harold, Helfer Olivia, Barry Smith & Others - 2013 - Nucleic Acids Research 42 (1):D415-21..
    The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO (...)
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  13. Truth, Structure and Object.Rodrigues André - manuscript
    : To address the question “on what there is” raised by Quine, and to accomplish the task of comprehending exhaustively the many ontological units that populate the great province of Being, we propose as an alternative to Puntel’s ontology a new ontology designated as “Structural Ontology” (SO). Such ontology is based on systematic-structural theoretical foundations, but leads to a diverse view in which structured factual units, structural configurations (dynamics), as well as apparent ontological (...)
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  14. Types and taxonomic structures in conceptual modeling: A novel ontological theory and engineering support.Giancarlo Guizzardi, Tiago Prince Sales, Claudenir M. Fonseca & Daniele Porello - 2021 - Data and Knowledge Engineering 1 (134):101891.
    Types are fundamental for conceptual modeling and knowledge representation, being an essential construct in all major modeling languages in these fields. Despite that, from an ontological and cognitive point of view, there has been a lack of theoretical support for precisely defining a consensual view on types. As a consequence, there has been a lack of precise methodological support for users when choosing the best way to model general terms representing types that appear in a domain, and for building sound (...)
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  15.  66
    The ontology of videogames.Alexandre Declos - forthcoming - Synthese.
    What are the identity and persistence conditions of videogames? This paper surveys the contemporary philosophical literature on this topic. Specifically, I discuss various views which attempt to ground the identity of videogame works in their rules, in their algorithmic structure, in their source code, or in contextual parameters surrounding gameplay. While these proposals all have merits of their own, I argue that none of them are satisfactory. My conclusion is therefore negative: we still lack an adequate theoretical model to account (...)
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  16. Systemic Localisation of the Subject in Psychological Research: Structural and Ontological Visualisation.Vitalii Shymko - 2016 - Bulletin of Kiev Taras Shevchenko University (Military-Special Sciences) 34 (1):47-51.
    The article proposes systematisation and development of the discourse of the East European methodological traditions regarding application of the systematic approach as a way of subject localisation in psychological research. In particular, the author’s version of systematic localisation of psychological research subjects by means of structural and ontological visualisations has been developed. The procedure proposed for systematic localisation of the researched subject includes four subsequent stages: 1) fixation of the borders and structure of the ontological field which is being (...)
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  17. Ontology and Metaontology: A Contemporary Guide.Francesco Berto & Matteo Plebani - 2015 - New York: Bloomsbury Academic. Edited by Matteo Plebani.
    'Ontology and Metaontology: A Contemporary Guide' is a clear and accessible survey of ontology, focussing on the most recent trends in the discipline. -/- Divided into parts, the first half characterizes metaontology: the discourse on the methodology of ontological inquiry, covering the main concepts, tools, and methods of the discipline, exploring the notions of being and existence, ontological commitment, paraphrase strategies, fictionalist strategies, and other metaontological questions. The second half considers a series of case studies, introducing and familiarizing (...)
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  18. Ontologies as Integrative Tools for Plant Science.Ramona Walls, Balaji Athreya, Laurel Cooper, Justin Elser, Maria A. Gandolfo, Pankaj Jaiswal, Christopher J. Mungall, Justin Preece, Stefan Rensing, Barry Smith & Dennis W. Stevenson - 2012 - American Journal of Botany 99 (8):1263–1275.
    Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of the Semantic Web. This paper provides background on what bio-ontologies are, why they are relevant to botany, and the principles of ontology development. It includes an overview of ontologies and related resources that are relevant to plant (...)
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  19. The ontology of the Gene Ontology.Barry Smith, Jennifer Williams & Steffen Schulze-Kremer - 2003 - In Smith Barry, Williams Jennifer & Schulze-Kremer Steffen (eds.), AMIA 2003 Symposium Proceedings. AMIA. pp. 609-613.
    The rapidly increasing wealth of genomic data has driven the development of tools to assist in the task of representing and processing information about genes, their products and their functions. One of the most important of these tools is the Gene Ontology (GO), which is being developed in tandem with work on a variety of bioinformatics databases. An examination of the structure of GO, however, reveals a number of problems, which we believe can be resolved by taking account of (...)
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  20. Musical Works as Structural Universals.A. R. J. Fisher - 2021 - Erkenntnis 88 (3):1245-67.
    In the ontology of music the Aristotelian theory of musical works is the view that musical works are immanent universals. The Aristotelian theory (hereafter Musical Aristotelianism) is an attractive and serviceable hypothesis. However, it is overlooked as a genuine competitor to the more well-known theories of Musical Platonism and nominalism. Worse still, there is no detailed account in the literature of the nature of the universals that the Aristotelian identifies musical works with. In this paper, I argue that the (...)
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  21. Ontological theory for ontological engineering: Biomedical systems information integration.James M. Fielding, Jonathan Simon, Werner Ceusters & Barry Smith - 2004 - In Fielding James M., Simon Jonathan, Ceusters Werner & Smith Barry (eds.), Proceedings of the Ninth International Conference on the Principles of Knowledge Representation and Reasoning (KR2004), Whistler, BC, 2-5 June 2004. pp. 114–120.
    Software application ontologies have the potential to become the keystone in state-of-the-art information management techniques. It is expected that these ontologies will support the sort of reasoning power required to navigate large and complex terminologies correctly and efficiently. Yet, there is one problem in particular that continues to stand in our way. As these terminological structures increase in size and complexity, and the drive to integrate them inevitably swells, it is clear that the level of consistency required for such navigation (...)
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  22. In Pursuit of the Functional Definition of a Mind: The Inevitability of the Language Ontology.Vitalii Shymko - 2018 - Psycholinguistics 23 (1):327-346.
    In this article, the results of conceptualization of the definition of mind as an object of interdisciplinary applied research are described. The purpose of the theoretical analysis is to generate a methodological discourse suitable for a functional understanding of the mind in the context of the problem of natural language processing as one of the components of developments in the field of artificial intelligence. The conceptual discourse was realized with the help of the author's method of structural-ontological analysis, and (...)
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  23. Applied Ontology: An Introduction.Katherine Munn & Barry Smith (eds.) - 2008 - Frankfurt: ontos.
    Ontology is the philosophical discipline which aims to understand how things in the world are divided into categories and how these categories are related together. This is exactly what information scientists aim for in creating structured, automated representations, called 'ontologies,' for managing information in fields such as science, government, industry, and healthcare. Currently, these systems are designed in a variety of different ways, so they cannot share data with one another. They are often idiosyncratically structured, accessible only to those (...)
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  24. Growing block time structures for mathematical and conscious ontologies.Sylvain Poirier - manuscript
    A version of the growing block theory of time is developed based on the choice of both consciousness and mathematics as fundamental substances, while dismissing the reality/semantics distinction usually assumed by works on time theory. The well-analyzable growing block structure of mathematical ontology revealed by mathematical logic, is used as a model for a possible deeper working of conscious time. Physical reality is explained as emerging from a combination of both substances, with a proposed specific version of the Consciousness (...)
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  25. A Structural Explanation of Injustice in Conversations: It's about Norms.Saray Ayala-López - 2018 - Pacific Philosophical Quarterly 99 (4):726-748.
    In contrast to individualistic explanations of social injustice that appeal to implicit attitudes, structural explanations are unintuitive: they appeal to entities that lack clear ontological status, and the explanatory mechanism is similarly unclear. This makes structural explanations unappealing. The present work proposes a structural explanation of one type of injustice that happens in conversations, discursive injustice. This proposal meets two goals. First, it satisfactorily accounts for the specific features of this particular kind of injustice; and second, it (...)
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  26. Cognitive ontology in flux: The possibility of protean brains.Daniel D. Hutto, Anco Peeters & Miguel Segundo-Ortin - 2017 - Philosophical Explorations 20 (2):209-223.
    This paper motivates taking seriously the possibility that brains are basically protean: that they make use of neural structures in inventive, on-the-fly improvisations to suit circumstance and context. Accordingly, we should not always expect cognition to divide into functionally stable neural parts and pieces. We begin by reviewing recent work in cognitive ontology that highlights the inadequacy of traditional neuroscientific approaches when it comes to divining the function and structure of cognition. Cathy J. Price and Karl J. Friston, and (...)
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  27. (1 other version)Formal Ontology as an Operative Tool in the Theories of the Objects of the Life-World.Horacio Banega - 2012 - Symposium 16 (2):64-88.
    Formal ontology as it is presented in Husserl`s Third Logical Investigation can be interpreted as a fundamental tool to describe objects in a formal sense. It is presented one of the main sources: chapter five of Carl Stumpf`s Ûber den psycholoogischen Ursprung der Raumovorstellung (1873), and then it is described how Husserlian Formal Ontology is applied in Fifth Logical Investigation. Finally, it is applied to dramatic structures, in the spirit of Roman Ingarden.
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  28. Part Structures, Integrity, and the Mass-Count Distinction.Friederike Moltmann - 1998 - Synthese 116 (1):75 - 111.
    The notions of part and whole play an important role for ontology and in many areas of the semantics of natural language. Both in philosophy and linguistic semantics, usually a particular notion of part structure is used, that of extensional mereology. This paper argues that such a notion is insufficient for ontology and, especially, for the semantic analysis of the relevant constructions of natural language. What is needed for the notion of part structure, in addition to an ordering (...)
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  29. Primitive Ontology and the Classical World.Valia Allori - 2016 - In R. Kastner, J. Jeknic-Dugic & G. Jaroszkiewicz (eds.), Quantum Structural Studies: Classical Emergence from the Quantum Level. World Scientific. pp. 175-199.
    In this paper I present the common structure of quantum theories with a primitive ontology, and discuss in what sense the classical world emerges from quantum theories as understood in this framework. In addition, I argue that the primitive ontology approach is better at answering this question than the rival wave function ontology approach or any other approach in which the classical world is nonreductively ‘emergent:’ even if the classical limit within this framework needs to be fully (...)
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  30. Massive Modularity: An Ontological Hypothesis or an Adaptationist Discovery Heuristic?David Villena - 2023 - International Studies in the Philosophy of Science 36 (4):317-334.
    Cognitive modules are internal mental structures. Some theorists and empirical researchers hypothesise that the human mind is either partially or massively comprised of structures that are modular in nature. Is the massive modularity of mind hypothesis a cogent view about the ontological nature of human mind or is it, rather, an effective/ineffective adaptationist discovery heuristic for generating predictively successful hypotheses about both heretofore unknown psychological traits and unknown properties of already identified psychological traits? Considering the inadequacies of the case in (...)
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  31. Engineering ontologies: Foundations and theories from philosophy and logical theory.Nicola Guarino & Barry Smith - 2006 - In Nicola Guarino & Barry Smith (eds.), Engineering ontologies: Foundations and theories from philosophy and logical theory. pp. 1-13.
    Ontology as a branch of philosophy is the science of what is, of the kinds and structures of objects, properties, events, processes and relations in every area of reality. ‘Ontology’ is often used by philosophers as a synonym for ‘metaphysics’ (literally: ‘what comes after the Physics’), a term which was used by early students of Aristotle to refer to what Aristotle himself called ‘first philosophy’. The term ‘ontology’ (or ontologia) was itself coined in 1613, independently, by two (...)
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  32. The structures of the common-sense world.Barry Smith - 1995 - Acta Philosophica Fennica 58:290–317.
    While contemporary philosophers have devoted vast amounts of attention to the language we use in describing and finding our way about the world of everyday experience, they have, with few exceptions, refused to see this world itself as a fitting object of theoretical concern. In what follows I shall seek to show how the commonsensical world might be treated ontologically as an object of investigation in its own right. At the same time I shall seek to establish how such a (...)
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  33. Structure, Agency and the Sociology of Education: rescuing analytical dualism.Robert Archer - 1999 - British Journal of Sociology of Education 20 (1):5-21.
    Theorising the interplay of structure and agency is the quintessential focus of sociological endeavour. This paper aims to be part of that continuing endeavour, arguing for a stratified social ontology, where structure and agency are held to be irreducible to each other and causally efficacious, yet necessarily interdependent. It thus aims not to be part of that on-going journey in search of the 'ontological holy grail'. Instead, it offers a way of linking structure and agency which enables the practical (...)
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  34. Biodynamic Ontology: Applying BFO in the Biomedical Domain.Barry Smith, Pierre Grenon & Louis Goldberg - 2004 - Studies in Health and Technology Informatics 102:20–38.
    Current approaches to formal representation in biomedicine are characterized by their focus on either the static or the dynamic aspects of biological reality. We here outline a theory that combines both perspectives and at the same time tackles the by no means trivial issue of their coherent integration. Our position is that a good ontology must be capable of accounting for reality both synchronically (as it exists at a time) and diachronically (as it unfolds through time), but that these (...)
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  35. Ontological Minimalism about Phenomenology.Susanna Schellenberg - 2010 - Philosophy and Phenomenological Research 83 (1):1-40.
    I develop a view of the common factor between subjectively indistinguishable perceptions and hallucinations that avoids analyzing experiences as involving awareness relations to abstract entities, sense-data, or any other peculiar entities. The main thesis is that hallucinating subjects employ concepts (or analogous nonconceptual structures), namely the very same concepts that in a subjectively indistinguishable perception are employed as a consequence of being related to external, mind-independent objects or property-instances. These concepts and nonconceptual structures are identified with modes of presentation types. (...)
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  36. Ontology-based fusion of sensor data and natural language.Erik Thomsen & Barry Smith - 2018 - Applied ontology 13 (4):295-333.
    We describe a prototype ontology-driven information system (ODIS) that exploits what we call Portion of Reality (POR) representations. The system takes both sensor data and natural language text as inputs and composes on this basis logically structured POR assertions. The goal of our prototype is to represent both natural language and sensor data within a single framework that is able to support both axiomatic reasoning and computation. In addition, the framework should be capable of discovering and representing new kinds (...)
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  37. Ontological Complexity and Human Culture.D. J. Saab & F. Fonseca - forthcoming - In R. Hagengruber (ed.), Proceedings of Philosophy's Relevance in Information Science.
    Ontologies are being used by information scientists in order to facilitate the sharing of meaningful information. However, computational ontologies are problematic in that they often decontextualize information. The semantic content of information is dependent upon the context in which it exists and the experience through which it emerges. For true semantic interoperability to occur among diverse information systems, within or across domains, information must remain contextualized. In order to bring more context to computational ontologies, we introduce culture as an essential (...)
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  38. Return of Logos: Ontological Memory → Information → Time.Vladimir Rogozhin - 2013 - FQXi Contest 2013:00-08.
    Total ontological unification of matter at all levels of reality as a whole, its “grasp” of its dialectical structure, space dimensionality and structure of the language of nature – “house of Being” [1], gives the opportunity to see the “place” and to understand the nature of information as a phenomenon of Ontological (structural) Memory (OntoMemory), the measure of being of the whole, “the soul of matter”, qualitative quantity of the absolute forms of existence of matter (absolute states). “Information” and (...)
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  39. Physics and ontology - or The 'ontology-ladenness' of epistemology and the 'scientific realism'-debate.Rudolf Lindpointner - manuscript
    The question of what ontological insights can be gained from the knowledge of physics (keyword: ontic structural realism) cannot obviously be separated from the view of physics as a science from an epistemological perspective. This is also visible in the debate about 'scientific realism'. This debate makes it evident, in the form of the importance of perception as a criterion for the assertion of existence in relation to the 'theoretical entities' of physics, that epistemology itself is 'ontologically laden'. This (...)
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  40. (1 other version)GOL: A general ontological language.Wolfgang Degen, Barbara Heller, Heinrich Herre & Barry Smith - 2001 - In Barry Smith & Christopher Welty (eds.), Formal Ontology in Information Systems (FOIS). ACM Press. pp. 34-46.
    Every domain-specific ontology must use as a framework some upper-level ontology which describes the most general, domain-independent categories of reality. In the present paper we sketch a new type of upper-level ontology, which is intended to be the basis of a knowledge modelling language GOL (for: 'General Ontological Language'). It turns out that the upper- level ontology underlying standard modelling languages such as KIF, F-Logic and CycL is restricted to the ontology of sets. Set theory (...)
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  41. (1 other version)Ontologies for the life sciences.Steffen Schulze-Kremer & Barry Smith - 2005 - In Schulze-Kremer Steffen & Smith Barry (eds.), Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, vol. 4. Wiley.
    Where humans can manipulate and integrate the information they receive in subtle and ever changing ways from context to context, computers need structured and context-free background information of a sort which ontologies can help to provide. A domain ontology captures the stable, highly general and commonly accepted core knowledge for an application domain. The domain at issue here is that of the life sciences, in particular molecular biology and bioinformatics. Contemporary life science research includes components drawn from physics, chemistry, (...)
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  42. Bradley's Reductio of Relations and Formal Ontological Relations.Jani Hakkarainen & Markku Keinänen - 2016 - In Hemmo Laiho & Arto Repo (eds.), DE NATURA RERUM - Scripta in honorem professoris Olli Koistinen sexagesimum annum complentis. Turku: University of Turku. pp. 246-261.
    In this paper, we argue that formal ontological relations avoid Bradley's reductio of relations, including his famous relation regress.
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  43. The Ontology of Tendencies and Medical Information Sciences.Ludger Jansen - 2006 - In Ingvar Johansson, Bertin Klein & Thomas Roth-Berghofer (eds.), WSPI 2006: Contributions to the Third International Workshop on Philosophy and Informatics. pp. 1-14.
    In order to develop the ontology of tendencies for use in the representation of medical knowledge, tendencies are compared with other kinds of entities possessing the realizable-realization-structure, specifically: dispositions, propensities, abilities and virtues. The peculiarities of tendencies are discussed and a standard schema of tendency ascription is developed in order to represent the relations between the ascriptions of tendency tokens to particulars and the ascriptions of tendency types to universals. Two non-standard cases and their epistemic variants are discussed.
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  44. The Plant Ontology facilitates comparisons of plant development stages across species.Ramona Lynn Walls, Laurel Cooper, Justin Lee Elser, Maria Alejandra Gandolfo, Christopher J. Mungall, Barry Smith, Dennis William Stevenson & Pankaj Jaiswal - 2019 - Frontiers in Plant Science 10.
    The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from genomic and phenomic studies. This paper describes the structure of the ontology and the design principles we used in constructing PO terms for plant development stages. It also provides details of the methodology and rationale behind our revision and expansion of the PO to cover development stages for all (...)
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  45. Should an Ontological Pluralist Be a Quantificational Pluralist?Byron Simmons - 2022 - Journal of Philosophy 119 (6):324-346.
    Ontological pluralism is the view that there are different fundamental ways of being. Recent defenders of this view—such as Kris McDaniel and Jason Turner—have taken these ways of being to be best captured by semantically primitive quantifier expressions ranging over different domains. They have thus endorsed, what I shall call, quantificational pluralism. I argue that this focus on quantification is a mistake. For, on this view, a quantificational structure—or a quantifier for short—will be whatever part or aspect of reality’s structure (...)
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  46. Against digital ontology.Luciano Floridi - 2009 - Synthese 168 (1):151 - 178.
    The paper argues that digital ontology (the ultimate nature of reality is digital, and the universe is a computational system equivalent to a Turing Machine) should be carefully distinguished from informational ontology (the ultimate nature of reality is structural), in order to abandon the former and retain only the latter as a promising line of research. Digital vs. analogue is a Boolean dichotomy typical of our computational paradigm, but digital and analogue are only “modes of presentation” of (...)
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  47. Formal Ontology for Natural Language Processing and the Integration of Biomedical Databases.Jonathan Simon, James M. Fielding, Mariana C. Dos Santos & Barry Smith - 2005 - International Journal of Medical Informatics 75 (3-4):224-231.
    The central hypothesis of the collaboration between Language and Computing (L&C) and the Institute for Formal Ontology and Medical Information Science (IFOMIS) is that the methodology and conceptual rigor of a philosophically inspired formal ontology greatly benefits application ontologies. To this end r®, L&C’s ontology, which is designed to integrate and reason across various external databases simultaneously, has been submitted to the conceptual demands of IFOMIS’s Basic Formal Ontology (BFO). With this project we aim to move (...)
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  48. Must Structural Realism Cover the Special Sciences?Holger Lyre - 2013 - In Vassilios Karakostas & Dennis Dieks (eds.), EPSA11 Perspectives and Foundational Problems in Philosophy of Science. Cham: Springer. pp. 383--390.
    Structural Realism (SR) is typically rated as a moderate realist doctrine about the ultimate entities of nature described by fundamental physics. Whether it must be extended to the higher-level special sciences is not so clear. In this short paper I argue that there is no need to ‘structuralize’ the special sciences. By mounting concrete examples I show that structural descriptions and structural laws certainly play a role in the special sciences, but that they don’t play any exclusive (...)
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  49. Biomedical imaging ontologies: A survey and proposal for future work.Barry Smith, Sivaram Arabandi, Mathias Brochhausen, Michael Calhoun, Paolo Ciccarese, Scott Doyle, Bernard Gibaud, Ilya Goldberg, Charles E. Kahn Jr, James Overton, John Tomaszewski & Metin Gurcan - 2015 - Journal of Pathology Informatics 6 (37):37.
    Ontology is one strategy for promoting interoperability of heterogeneous data through consistent tagging. An ontology is a controlled structured vocabulary consisting of general terms (such as “cell” or “image” or “tissue” or “microscope”) that form the basis for such tagging. These terms are designed to represent the types of entities in the domain of reality that the ontology has been devised to capture; the terms are provided with logical defi nitions thereby also supporting reasoning over the tagged (...)
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  50. (1 other version)Quine, Ontology, and Physicalism.Frederique Janssen-Lauret - 2019 - In Robert Sinclair (ed.), Science and Sensibilia by W. V. Quine: The 1980 Immanuel Kant Lectures. Cham: Palgrave Macmillan. pp. 181-204.
    Quine's views on ontology and naturalism are well-known but rarely considered in tandem. According to my interpretation the connection between them is vital. I read Quine as a global epistemic structuralist. Quine thought we only ever know objects qua solutions to puzzles about significant intersections in observations. Objects are always accessed descriptively, via their roles in our best theory. Quine's Kant lectures contain an early version of epistemic structuralism with uncharacteristic remarks about the mental. Here Quine embraces mitigated anomalous (...)
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