Results for 'Laurel L. Yasko'

996 found
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  1. The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin L. Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud & Pankaj Jaiswal - 2018 - Nucleic Acids Research 46 (D1):D1168–D1180.
    The Planteome project provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology, and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides (...)
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  2. The Plant Ontology: A common reference ontology for plants.L. Walls Ramona, D. Cooper Laurel, Elser Justin, W. Stevenson Dennis, Barry Smith, Mungall Chris, A. Gandolfo Maria & Jaiswal Pankaj - 2010 - In Walls Ramona L., Cooper Laurel D., Justin Elser, Stevenson Dennis W., Smith Barry, Chris Mungall, Gandolfo Maria A. & Pankaj Jaiswal (eds.), Proceedings of the Workshop on Bio-Ontologies, ISMB, Boston, July, 2010.
    The Plant Ontology (PO) (http://www.plantontology.org) (Jaiswal et al., 2005; Avraham et al., 2008) was designed to facilitate cross-database querying and to foster consistent use of plant-specific terminology in annotation. As new data are generated from the ever-expanding list of plant genome projects, the need for a consistent, cross-taxon vocabulary has grown. To meet this need, the PO is being expanded to represent all plants. This is the first ontology designed to encompass anatomical structures as well as growth and developmental stages (...)
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  3. The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.Laurel Cooper, Ramona Walls, Justin Elser, Maria A. Gandolfo, Dennis W. Stevenson, Barry Smith & Others - 2013 - Plant and Cell Physiology 54 (2):1-23..
    The Plant Ontology (PO; http://www.plantontology.org/) is a publicly-available, collaborative effort to develop and maintain a controlled, structured vocabulary (“ontology”) of terms to describe plant anatomy, morphology and the stages of plant development. The goals of the PO are to link (annotate) gene expression and phenotype data to plant structures and stages of plant development, using the data model adopted by the Gene Ontology. From its original design covering only rice, maize and Arabidopsis, the scope of the PO has been expanded (...)
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  4. A Derridean Approach To Musical Identity.Laurel Ralston - 2008 - Postgraduate Journal of Aesthetics 5 (2):32-40.
    The issue of musical identity—of what defines works of music, gives each its unique character and distinguishes them from one another—is one of the central issues in the philosophy of music. Too often in the philosophical literature it is approached as a purely theoretical question, one that can be answered adequately through careful intellectual consideration of scores and performances. The typical philosophical approach to the performance of Western art music, particularly that composed between the Baroque and Romantic eras, is to (...)
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  5. The Plant Ontology facilitates comparisons of plant development stages across species.Ramona Lynn Walls, Laurel Cooper, Justin Lee Elser, Maria Alejandra Gandolfo, Christopher J. Mungall, Barry Smith, Dennis William Stevenson & Pankaj Jaiswal - 2019 - Frontiers in Plant Science 10.
    The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from genomic and phenomic studies. This paper describes the structure of the ontology and the design principles we used in constructing PO terms for plant development stages. It also provides details of the methodology and rationale behind our revision and expansion of the PO to cover development stages for all plants, particularly (...)
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  6. Ontologies as Integrative Tools for Plant Science.Ramona Walls, Balaji Athreya, Laurel Cooper, Justin Elser, Maria A. Gandolfo, Pankaj Jaiswal, Christopher J. Mungall, Justin Preece, Stefan Rensing, Barry Smith & Dennis W. Stevenson - 2012 - American Journal of Botany 99 (8):1263–1275.
    Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of the Semantic Web. This paper provides background on what bio-ontologies are, why they are relevant to botany, and the principles of ontology development. It includes an overview of ontologies and related resources that are relevant to plant science, (...)
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  7. Finding Our Way through Phenotypes.Andrew R. Deans, Suzanna E. Lewis, Eva Huala, Salvatore S. Anzaldo, Michael Ashburner, James P. Balhoff, David C. Blackburn, Judith A. Blake, J. Gordon Burleigh, Bruno Chanet, Laurel D. Cooper, Mélanie Courtot, Sándor Csösz, Hong Cui, Barry Smith & Others - 2015 - PLoS Biol 13 (1):e1002033.
    Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across many key fields in biology, including genomics, systems biology, development, medicine, evolution, ecology, and systematics. Here we survey the current phenomics landscape, including data resources and handling, and the progress that (...)
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  8. Editorial: Genome Invading RNA Networks.L. P. Villarreal & Guenther Witzany - 2018 - Frontiers in Microbiology 9:1-3.
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  9. Advance Requests for Medically-Assisted Dying.L. W. Sumner - manuscript
    When medical assistance in dying (MAiD) was legalized in Canada in June 2016, the question of allowing decisionally capable persons to make advance requests in anticipation of later incapacity was reserved for further consideration during the mandatory parliamentary review originally scheduled to begin in June 2020 (but since delayed by COVID-19). In its current form the legislation does not permit such requests, since it stipulates that at the time at which the procedure is to be administered the patient must give (...)
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  10. University Governance and Campus Speech.L. W. Sumner - manuscript
    Hate speech, understood broadly, is any form of expression intended to arouse hatred or contempt toward members of a particular social group. When university administrators have reason to believe that a planned speaking event on campus may feature hate speech (at least in the eyes of some), how should they respond? In this paper I address this question as it arises for Canadian universities. I argue that, where the regulation of campus speech is concerned, the right course of action for (...)
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  11. Chose et subjectivité dans l'Ethique de Spinoza.L. Levy - 1998 - Revue des Sciences Philosophiques Et Théologiques 82 (1):49-64.
    Le but de ce texte est de mettre en évidence les équi­valences entre la façon dont le concept de conatus résout, dans l'Éthique, le problème de l'unité modale complexe. en rendant consis­tant le concept de chose singulière en tant que celle-ci doit être consi­dérée comme un légitime sujet d'attribution d'états, et la façon dont ce même concept dessine le rapport cognitif de l'esprit avec lui-même, rapport par lequel l'esprit se saisit comme sujet de ses états et qui ca­ractérise la notion (...)
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  12. Constructing Models of Ethical Knowledge: A Scientific Enterprise.L. P. Steffe - 2014 - Constructivist Foundations 9 (2):262-264.
    Open peer commentary on the article “Ethics: A Radical-constructivist Approach” by Andreas Quale. Upshot: The first of my two main goals in this commentary is to establish thinking of ethics as concepts rather than as non-cognitive knowledge. The second is to argue that establishing models of individuals’ ethical concepts is a scientific enterprise that is quite similar to establishing models of individuals’ mathematical concepts. To accomplish these two primary goals, I draw from my experience of working scientifically with von Glasersfeld (...)
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  13. La temporalité à l’épreuve du confinement - A temporalidade à prova do confinamento.Hélène L’Heuillet - 2021 - Revista Natureza Humana 23:37-45.
    Je cherche à explorer comment l'expérience de la temporalité est multiforme et fortement perturbée à l'époque de la pandémie Covid-19 et des politiques de confinement, générant une expérience d'hétérochronie, qui remet en question notre rapport à la vie.
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  14. What You Can't Expect When You're Expecting'.L. A. Paul - 2015 - Res Philosophica 92 (2):1-23.
    It seems natural to choose whether to have a child by reflecting on what it would be like to actually have a child. I argue that this natural approach fails. If you choose to become a parent, and your choice is based on projections about what you think it would be like for you to have a child, your choice is not rational. If you choose to remain childless, and your choice is based upon projections about what you think it (...)
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  15. Temporal Experience.L. A. Paul - 2010 - Journal of Philosophy 107 (7):333-359.
    The question I want to explore is whether experience supports an antireductionist ontology of time, that is, whether we should take it to support an ontology that includes a primitive, monadic property of nowness responsible for the special feel of events in the present, and a relation of passage that events instantiate in virtue of literally passing from the future, to the present, and then into the past.
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  16. What, if anything, is represented? Objects in their worlds.David L. Thompson - manuscript
    The received Cognitive Science paradigm holds that the brain manipulates mental representations of reality. This position is problematic. My alternative to representationalism is that each organism lives in its own "world" made up of objects defined by reference to the organism’s perceptual systems. These objects act as supervenient causes on organisms without the mediation of mental representations. (1992).
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  17. A One Category Ontology.L. A. Paul - 2017 - In John A. Keller (ed.), Being, Freedom, and Method: Themes From the Philosophy of Peter van Inwagen. New York: Oxford University Press UK. pp. 32-62.
    I defend a one category ontology: an ontology that denies that we need more than one fundamental category to support the ontological structure of the world. Categorical fundamentality is understood in terms of the metaphysically prior, as that in which everything else in the world consists. One category ontologies are deeply appealing, because their ontological simplicity gives them an unmatched elegance and spareness. I’m a fan of a one category ontology that collapses the distinction between particular and property, replacing it (...)
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  18. Performativity and the 'True/False Fetish'.Savas L. Tsohatzidis - 2017 - In Interpreting J. L. Austin: Critical Essays. Cambridge University Press. pp. 96-118.
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  19. An Inferential Impasse in the Theory of Implicatures.Savas L. Tsohatzidis - manuscript
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  20. Statistical Inference and the Plethora of Probability Paradigms: A Principled Pluralism.Mark L. Taper, Gordon Brittan Jr & Prasanta S. Bandyopadhyay - manuscript
    The major competing statistical paradigms share a common remarkable but unremarked thread: in many of their inferential applications, different probability interpretations are combined. How this plays out in different theories of inference depends on the type of question asked. We distinguish four question types: confirmation, evidence, decision, and prediction. We show that Bayesian confirmation theory mixes what are intuitively “subjective” and “objective” interpretations of probability, whereas the likelihood-based account of evidence melds three conceptions of what constitutes an “objective” probability.
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  21. La temporalité à l’épreuve du confinement.Hélène L’Heuillet - 2021 - Natureza Humana Revista Internacional de Filosofia E Psicanálise 23:37-45.
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  22. Fanfiction, Canon, and Possible Worlds.Sara L. Uckelman - manuscript
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  23. Kant’s Anthropology as Klugheitslehre.Holly L. Wilson - 2016 - Con-Textos Kantianos 3:122-138.
    In this essay I show that Kant intended his anthropology lectures and book, Anthropology from a Pragmatic Point of View, to be a Klugheitslehre (theory of prudence). The essay draws on many quotes from these sources to show that Kant wanted to develop a theory of how to use other people for one’s own ends. Although so much of the lectures and book are in conversation with Baumgarten’s empirical psychology, there are enough references to Klugheit (prudence) and klug (clever) action (...)
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  24. Wittgenstein on Rules. Justification, Grammar, and Agreement, by James R. Shaw.José L. Zalabardo - forthcoming - Mind.
    James Shaw has written an excellent book on Wittgenstein’s rule-following considerations. It manages to provide fresh perspectives on a topic on which it seemed.
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  25. Instituciones, evolución y delincuencia racional: Hacia una perspectiva posthumeana.José L. Tasset - 2018 - Araucaria 20 (40).
    Este trabajo pretende mostrar las líneas generales de la propuesta humeana de una teoría de la evolución de las instituciones en clave utilitarista; en segundo lugar, analizará la objeción interna a esta teoría que supone la existencia de posibles sujetos no cooperadores pero inteligentes, en tercer lugar, intentará también defender dicha teoría de la acusación externa de no tener un auténtico carácter normativo; y al no haber desarrollado el propio Hume con detalle su contestación al problema del conflicto Moral/Racionalidad, tal (...)
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  26. First personal modes of presentation and the structure of empathy.L. A. Paul - 2017 - Inquiry: An Interdisciplinary Journal of Philosophy 60 (3):189-207.
    I argue that we can understand the de se by employing the subjective mode of presentation or, if one’s ontology permits it, by defending an abundant ontology of perspectival personal properties or facts. I do this in the context of a discussion of Cappelen and Dever’s recent criticisms of the de se. Then, I discuss the distinctive role of the first personal perspective in discussions about empathy, rational deference, and self-understanding, and develop a way to frame the problem of lacking (...)
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  27. On Knaves and Rules. (An Approach to the 'Sensible Knave' Problem from a Tempered Rule Utilitarianism).José L. Tasset - 2011 - Daimon: Revista Internacional de Filosofía 52:117-140.
    In the attempt of defending an interpretation of David Hume's moral and political philosophy connected to classical utilitarianism, intervenes in a key way the so called problem of the " Sensitive Knave " raised by this author at the end of his more utilitarian work, the Enquiry Concerning the Principles of Morals. According to the classic interpretation of this fragment, the utilitarian rationality in politics would clash with morality turning useless the latter. Therefore, in the political area the defense of (...)
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  28. The Narrative Self is Constituted by Attributing Responsibility.David L. Thompson - manuscript
    A self is a temporal unity in which responsibility for past commitments modifies how the present world is experienced and evaluated. This structure is analogous (a) to biological evolutionary changes in perception and (b) to how changes in a computer program determine how it will respond in the future. Responsibility is not an add-on to a self, but the mode of its integration over time. (Presented at Royal Institute of Philosophy Annual Conference, Narrative and Understanding Persons, University of Hertfordshire, UK, (...)
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  29.  36
    Over de grondslagen der wiskunde.L. E. J. Brouwer - 1907 - Amsterdam-Leipzig: Maas & van Suchtelen.
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  30. Existing Ethical Tensions in Xenotransplantation.L. Syd M. Johnson - 2022 - Cambridge Quarterly of Healthcare Ethics 31 (3):355-367.
    The genetic modification of pigs as a source of transplantable organs is one of several possible solutions to the chronic organ shortage. This paper describes existing ethical tensions in xenotransplantation (XTx) that argue against pursuing it. Recommendations for lifelong infectious disease surveillance and notification of close contacts of recipients are in tension with the rights of human research subjects. Parental/guardian consent for pediatric xenograft recipients is in tension with a child’s right to an open future. Individual consent to transplant is (...)
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  31. Thought and Image.David L. Thompson - manuscript
    Thought is not based on an image that is isomorphic to the object. Descartes, Husserl, Frege, Wittgenstein and Brandom progressively overcome this Aristotelian misconception of the intentionality of thinking.
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  32. Public Health, Public Goods, and Market Failure.L. Chad Horne - 2019 - Public Health Ethics 12 (3):287-292.
    This discussion revises and extends Jonny Anomaly's ‘public goods’ account of public health ethics in light of recent criticism from Richard Dees. Public goods are goods that are both non-rival and non-excludable. What is significant about such goods is that they are not always provided efficiently by the market. Indeed, the state can sometimes realize efficiency gains either by supplying such goods directly or by compelling private purchase. But public goods are not the only goods that the market may fail (...)
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  33. Intеrсulturаl соmmuniсаtiоn in thе соntеxt оf glоbаlizаtiоn: Sоmе philоsоphiсаl issuеs.Lе Kiеn - 2019 - WP.
    In this аrtiсlе, thе аuthоr fосusеs оn еluсidаting sоmе philоsоphiсаl аspесts оf intеrсulturаl соmmuniсаtiоn in thе соntеxt оf glоbаlizаtiоn оn thе bаsis оf rесоgnizing thе соntributiоns аnd limitаtiоns оf Wittgеnstеin tо thе birth оf philоsоphy. сulturе study. Thоsе philоsоphiсаl issuеs аrе: thе similаrity in thinking аnd асting оf pеоplе асrоss сulturеs; divеrsity оf сulturеs, wоrldviеws аnd wаys оf lifе. Frоm thе Mаrxist pоint оf viеw, thе аuthоr pоintеd оut аnd сritiсizеd thе limitаtiоns оf Wittgеnstеin's philоsоphiсаl соnсеptiоn; аnd аt thе sаmе (...)
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  34. What Makes Us Essentially Different? 2007.David L. Thompson - manuscript
    The sameness and difference of entities depend on context or horizon and these horizons may be either synchronous or diachronic. Money and qualia are examples of identity within synchronic contexts. Music, biological functions, and cultural roles are defined by their diachronic horizons. The diachronic cultural and narrative contexts of selves are what makes them distinctively different.
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  35. Exploratory experiments.L. R. Franklin - 2005 - Philosophy of Science 72 (5):888-899.
    Philosophers of experiment have acknowledged that experiments are often more than mere hypothesis-tests, once thought to be an experiment's exclusive calling. Drawing on examples from contemporary biology, I make an additional amendment to our understanding of experiment by examining the way that `wide' instrumentation can, for reasons of efficiency, lead scientists away from traditional hypothesis-directed methods of experimentation and towards exploratory methods.
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  36. The Identity of the Self over Time is Normative.David L. Thompson - manuscript
    The temporal unity of the self cannot be accounted for by the continuity of causal, factual, or contiguous relations between independently definable mental events, as proposed by Locke and Parfit. The identity of the self over time is normative: it depends on the institutional context of social rules external to the self that determine the relationship between past commitments and current responsibilities. (2005).
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  37. The Subjectively Enduring Self.L. A. Paul - 2017 - In Ian Phillips (ed.), The Routledge Handbook of Philosophy of Temporal Experience: Routledge Handbooks in Philosophy. New York: Routledge. pp. 262-271.
    The self can be understood in objective metaphysical terms as a bundle of properties, as a substance, or as some other kind of entity on our metaphysical list of what there is. Such an approach explores the metaphysical nature of the self when regarded from a suitably impersonal, ontological perspective. It explores the nature and structure of the self in objective reality, that is, the nature and structure of the self from without. This is the objective self. I am taking (...)
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  38. The Constitution of Objects by Systems.David L. Thompson -
    Against the concept that objects are defined by their self-contained essence – “thing-in-themselves” – Husserl and Foucault claim they are defined by intersubjectivity or social institutions. I argue that biological and even physical (complex) systems can constitute the unity and meaning of objects.
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  39. Normative Binding.David L. Thompson - manuscript
    Why should anyone be bound by cognitive norms, such as the norms of reason or mathematics? To become a mathematician is to learn to obey the norms of the mathematical community. A self becomes intentional by binding itself to communal norms. Only then can it have the freedom to think or make assertions about the community’s objects -- triangles or imaginary numbers, for example. Norms do not bind selves from the outside: being bound by norms is what constitutes a self.
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  40. Identifying Difference, Engaging Dissent: What is at Stake in Democratizing Knowledge?L. King, B. Morgan-Olsen & J. Wong - 2016 - Foundations of Science 21 (1):69-88.
    Several prominent voices have called for a democratization of science through deliberative processes that include a diverse range of perspectives and values. We bring these scholars into conversation with extant research on democratic deliberation in political theory and the social sciences. In doing so, we identify systematic barriers to the effectiveness of inclusive deliberation in both scientific and political settings. We are particularly interested in what we call misidentified dissent, where deliberations are starkly framed at the outset in terms of (...)
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  41. On the logical unsolvability of the Gettier problem.L. Floridi - 2004 - Synthese 142 (1):61 - 79.
    The tripartite account of propositional, fallibilist knowledge that p as justified true belief can become adequate only if it can solve the Gettier Problem. However, the latter can be solved only if the problem of a successful coordination of the resources (at least truth and justification) necessary and sufficient to deliver propositional, fallibilist knowledge that p can be solved. In this paper, the coordination problem is proved to be insolvable by showing that it is equivalent to the ''''coordinated attack'''' problem, (...)
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  42. Art as Cognitio Imaginativa: Gadamer on Intuition and Imagination in Kant's Aesthetic Theory.Daniel L. Tate - 2009 - Journal of the British Society for Phenomenology 40 (3):279-299.
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  43. What Makes Health Care Special?: An Argument for Health Care Insurance.L. Chad Horne - 2017 - Kennedy Institute of Ethics Journal 27 (4):561-587.
    Citizens in wealthy liberal democracies are typically expected to see to basic needs like food, clothing, and shelter out of their own income, and those without the means to do so usually receive assistance in the form of cash transfers. Things are different with health care. Most liberal societies provide their citizens with health care or health care insurance in kind, either directly from the state or through private insurance companies that are regulated like public utilities. Except perhaps for small (...)
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  44. Medical Need, Equality, and Uncertainty.L. Chad Horne - 2016 - Bioethics 30 (8):588-596.
    Many hold that distributing healthcare according to medical need is a requirement of equality. Most egalitarians believe, however, that people ought to be equal on the whole, by some overall measure of well-being or life-prospects; it would be a massive coincidence if distributing healthcare according to medical need turned out to be an effective way of promoting equality overall. I argue that distributing healthcare according to medical need is important for reducing individuals' uncertainty surrounding their future medical needs. In other (...)
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  45. The puzzle of the changing past.L. Barlassina & F. Del Prete - 2015 - Analysis 75 (1):59-67.
    If you utter sentence (1) ‘Obama was born in 1961’ now, you say something true about the past. Since the past will always be such that the year 1961 has the property of being a time in which Obama was born, it seems impossible that could ever be false in a future context of utterance. We shall consider the case of a sentence about the past exactly like (1), but which was true when uttered a few years ago and is (...)
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  46. Kant's Treasure Hard-to-Attain.L. Agosta - 1978 - Kant-Studien: Philosophische Zeitschrift der Kant-Gesellschaft 69 (4):422.
    This article looks at Kant's idea of the highest good and does so in the context of a folk tale from the anonymous collection of the Brother's Grimm entitled "the White Snake." The tale is analyzed form a structuralist perspective as an exemplar of suffering, struggling humanity and the striving for ethical completeness.
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  47. Switching to the rubber hand.S. L. Yeh & Timothy Joseph Lane - 2017 - Frontiers in Psychology 8.
    Inducing the rubber hand illusion (RHI) requires that participants look at an imitation hand while it is stroked in synchrony with their occluded biological hand. Previous explanations of the RHI have emphasized multisensory integration, and excluded higher cognitive functions. We investigated the relationship between the RHI and higher cognitive functions by experimentally testing task switch (as measured by switch cost) and mind wandering (as measured by SART score); we also included a questionnaire for attentional control that comprises two subscales, attention-shift (...)
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  48. Punishment and Responsibility: Essays in the Philosophy of Law.H. L. A. Hart - 1968 - Oxford University Press.
    This classic collection of essays, first published in 1968, represents H.L.A. Hart's landmark contribution to the philosophy of criminal responsibility and punishment. Unavailable for ten years, this new edition reproduces the original text, adding a new critical introduction by John Gardner, a leading contemporary criminal law theorist.
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  49. Bacteria, sex, and systematics.L. R. Franklin - 2007 - Philosophy of Science 74 (1):69-95.
    Philosophical discussions of species have focused on multicellular, sexual animals and have often neglected to consider unicellular organisms like bacteria. This article begins to fill this gap by considering what species concepts, if any, apply neatly to the bacterial world. First, I argue that the biological species concept cannot be applied to bacteria because of the variable rates of genetic transfer between populations, depending in part on which gene type is prioritized. Second, I present a critique of phylogenetic bacterial species, (...)
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  50. Culture and Personality.David L. Thompson - 1970 - Dissertation, Université Catholique de Louvain
    Methodological and philosophical foundations in the anthropology of Ruth Benedict and Margaret Mead.
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