Results for 'realism-based ontology'

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  1. Applying the Realism-Based Ontology-Versioning Method for Tracking Changes in the Basic Formal Ontology.Selja Seppälä, Barry Smith & Werner Ceusters - 2014 - In P. Garbacz & O. Kutz (eds.), Formal Ontology in Information Systems (FOIS 2014). IOS Press. pp. 227-240.
    Changes in an upper level ontology have obvious conse-quences for the domain ontologies that use it at lower levels. It is therefore crucial to document the changes made between successive versions of ontologies of this kind. We describe and apply a method for tracking, explaining and measuring changes between successive versions of upper level ontologies such as the Basic Formal Ontology (BFO). The proposed change-tracking method extends earlier work on Realism-Based Ontology Versioning (RBOV) and Evolutionary (...)
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  2. Would SNOMED CT benefit from realism-based ontology evolution?Werner Ceusters, Kent Spackman & Barry Smith - 2007 - AMIA Annual Symposium Proceedings 2007:105-109.
    If SNOMED CT is to serve as a biomedical reference terminology, then steps must be taken to ensure comparability of information formulated using successive versions. New releases are therefore shipped with a history mechanism. We assessed the adequacy of this mechanism for its treatment of the distinction between changes occurring on the side of entities in reality and changes in our understanding thereof. We found that these two types are only partially distinguished and that a more detailed study is required (...)
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  3. A realism-based approach to the evolution of biomedical ontologies.Barry Smith - 2006 - In Proceedings of the Annual AMIA Symposium. Washington, DC: American Medical Informatics Association. pp. 121-125.
    We present a novel methodology for calculating the improvements obtained in successive versions of biomedical ontologies. The theory takes into account changes both in reality itself and in our understanding of this reality. The successful application of the theory rests on the willingness of ontology authors to document changes they make by following a number of simple rules. The theory provides a pathway by which ontology authoring can become a science rather than an art, following principles analogous to (...)
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  4. An evolutionary approach to realism-based adverse event representations.Werner Ceusters, Maria Capolupo, G. De Moor, J. Devlies & Barry Smith - 2011 - Methods of Information in Medicine 50 (1):62-73.
    One way to detect, monitor and prevent adverse events with the help of Information Technology is by using ontologies capable of representing three levels of reality: what is the case, what is believed about reality, and what is represented. We report on how Basic Formal Ontology and Referent Tracking exhibit this capability and how they are used to develop an adverse event ontology and related data annotation scheme for the European ReMINE project.
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  5. Dealing with elements of medical encounters: An approach based on ontological realism.Farinelli Fernanda, Almeida Mauricio, Elkin Peter & Barry Smith - 2016 - Proceedings of the Joint International Conference on Biological Ontology and Biocreative 1747.
    Electronic health records (EHRs) serve as repositories of documented data collected in a health care encounter. An EHR records information about who receives, who provides the health care and about the place where the encounter happens. We also observe additional elements relating to social relations in which the healthcare consumer is involved. To provide a consensus representation of common data and to enhance interoperability between different EHR repositories we have created a solution grounded in formal ontology. Here, we present (...)
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  6. Foundations for a Realist Ontology of Mental Disease.Werner Ceusters & Barry Smith - 2010 - Journal of Biomedical Semantics 1 (10):1-23.
    While classifications of mental disorders have existed for over one hundred years, it still remains unspecified what terms such as 'mental disorder', 'disease' and 'illness' might actually denote. While ontologies have been called in aid to address this shortfall since the GALEN project of the early 1990s, most attempts thus far have sought to provide a formal description of the structure of some pre-existing terminology or classification, rather than of the corresponding structures and processes on the side of the patient. (...)
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  7. Foundation for a Realist Ontology of Cognitive Processes.David Kasmier, David Limbaugh & Barry Smith - 2019 - In Proceedings of the International Conference on Biomedical Ontology (ICBO), University at Buffalo, NY.
    What follows is a first step towards an ontology of conscious mental processes. We provide a theoretical foundation and characterization of conscious mental processes based on a realist theory of intentionality and using BFO as our top-level ontology. We distinguish three components of intentional mental process: character, directedness, and objective referent, and describe several features of the process character and directedness significant to defining and classifying mental processes. We arrive at the definition of representational mental process as (...)
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  8. Clinical data wrangling using Ontological Realism and Referent Tracking.Werner Ceusters, Chiun Yu Hsu & Barry Smith - 2014 - In Proceedings of the Fifth International Conference on Biomedical Ontology (ICBO), Houston, 2014, (CEUR, 1327). pp. 27-32.
    Ontological realism aims at the development of high quality ontologies that faithfully represent what is general in reality and to use these ontologies to render heterogeneous data collections comparable. To achieve this second goal for clinical research datasets presupposes not merely (1) that the requisite ontologies already exist, but also (2) that the datasets in question are faithful to reality in the dual sense that (a) they denote only particulars and relationships between particulars that do in fact exist and (...)
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  9. Ontology-based integration of medical coding systems and electronic patient records.W. Ceusters, Barry Smith & G. De Moor - 2004 - IFOMIS Reports.
    In the last two decades we have witnessed considerable efforts directed towards making electronic healthcare records comparable and interoperable through advances in record architectures and (bio)medical terminologies and coding systems. Deep semantic issues in general, and ontology in particular, have received some interest from the research communities. However, with the exception of work on so-called ‘controlled vocabularies’, ontology has thus far played little role in work on standardization. The prime focus has been rather the rapid population of terminologies (...)
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  10. Benefits of Realist Ontologies to Systems Engineering.Eric Merrell, Robert M. Kelly, David Kasmier, Barry Smith, Marc Brittain, Ronald Ankner, Evan Maki, Curtis W. Heisey & Kevin Bush - 2021 - 8th International Workshop on Ontologies and Conceptual Modelling (OntoCom).
    Applied ontologies have been used more and more frequently to enhance systems engineering. In this paper, we argue that adopting principles of ontological realism can increase the benefits that ontologies have already been shown to provide to the systems engineering process. Moreover, adopting Basic Formal Ontology (BFO), an ISO standard for top-level ontologies from which more domain specific ontologies are constructed, can lead to benefits in four distinct areas of systems engineering: (1) interoperability, (2) standardization, (3) testing, and (...)
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  11. Relationalism about mechanics based on a minimalist ontology of matter.Antonio Vassallo, Dirk-André Deckert & Michael Esfeld - 2016 - European Journal for Philosophy of Science:1-20.
    This paper elaborates on relationalism about space and time as motivated by a minimalist ontology of the physical world: there are only matter points that are individuated by the distance relations among them, with these relations changing. We assess two strategies to combine this ontology with physics, using classical mechanics as example: the Humean strategy adopts the standard, non-relationalist physical theories as they stand and interprets their formal apparatus as the means of bookkeeping of the change of the (...)
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  12. Negative findings in electronic health records and biomedical ontologies: a realist approach.Werner Ceusters, Peter Elkin & Barry Smith - 2007 - International Journal of Medical Informatics 76 (3):S326-S333.
    PURPOSE—A substantial fraction of the observations made by clinicians and entered into patient records are expressed by means of negation or by using terms which contain negative qualifiers (as in “absence of pulse” or “surgical procedure not performed”). This seems at first sight to present problems for ontologies, terminologies and data repositories that adhere to a realist view and thus reject any reference to putative non-existing entities. Basic Formal Ontology (BFO) and Referent Tracking (RT) are examples of such paradigms. (...)
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  13. Representing Mental Functioning: Ontologies for Mental Health and Disease.Janna Hastings, Werner Ceusters, Mark Jensen, Kevin Mulligan & Barry Smith - 2012 - In Janna Hastings, Werner Ceusters, Mark Jensen, Kevin Mulligan & Barry Smith (eds.), Towards an Ontology of Mental Functioning (ICBO Workshop). CEUR.
    Mental and behavioral disorders represent a significant portion of the public health burden in all countries. The human cost of these disorders is immense, yet treatment options for sufferers are currently limited, with many patients failing to respond sufficiently to available interventions and drugs. High quality ontologies facilitate data aggregation and comparison across different disciplines, and may therefore speed up the translation of primary research into novel therapeutics. Realism-based ontologies describe entities in reality and the relationships between them (...)
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  14. Realism and the Epistemic Objectivity of Science.Howard Sankey - 2021 - Kriterion - Journal of Philosophy 35 (1):5-20.
    The paper presents a realist account of the epistemic objectivity of science. Epistemic objectivity is distinguished from ontological objectivity and the objectivity of truth. As background, T.S. Kuhn’s idea that scientific theory-choice is based on shared scientific values with a role for both objective and subjective factors is discussed. Kuhn’s values are epistemologically ungrounded, hence provide a minimal sense of objectivity. A robust account of epistemic objectivity on which methodological norms are reliable means of arriving at the truth is (...)
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  15. what ontology for relational quantum mechanics?Mauro Dorato & Matteo Morganti - 2022
    In this paper, we evaluate some proposals that can be advanced to clarify the ontological consequences of Relational Quantum Mechanics. We first focus on priority monism and ontic structural realism and argue that these views are not suitable for providing an ontological interpretation of the theory. Then, we discuss an alternative interpretation that we regard as more promising, based on so-called ‘metaphysical coherentism’, which we also connect to the idea of an event-based, or ‘flash’, ontology.
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  16. Reference, Success and Entity Realism.Howard Sankey - 2012 - Kairos. Revista de Filosofia and Ciência 5:31-42.
    The paper discusses the version of entity realism presented by Ian Hacking in his book, Representing and Intervening. Hacking holds that an ontological form of scientific realism, entity realism, may be defended on the basis of experimental practices which involve the manipulation of unobservable entities. There is much to be said in favour of the entity realist position that Hacking defends, especially the pragmatist orientation of his approach to realism. But there are problems with the position. (...)
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  17. Against Lewisian Modal Realism from a Metaontological Point of View.Tora Koyama - 2017 - Philosophia 45 (3):1207-1225.
    Modal realism is an ontological position made familiar by David Lewis, according to which there exist possible worlds other than the actual world that we inhabit. It is hard to uphold modal realism, and indeed modal realism has only a few advocates. However, as most contemporary metaphysicians agree, this does not mean that it is easy to refute modal realism. In this paper, I argue against modal realism from a metaontological point of view. First, I (...)
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  18. Effective Ontic Structural Realism.James Ladyman & Lorenzo Lorenzetti - forthcoming - British Journal for the Philosophy of Science.
    Three accounts of effective realism (ER) have been advanced to solve three problems for scientific realism: Fraser and Vickers (forthcoming) develop a version of ER about non-relativistic quantum mechanics that they argue is compatible with all the main realist versions (‘interpretations’) of quantum mechanics avoiding the problem of underdetermination among them; Williams (2019) and Fraser (2020b) propose ER about quantum field theory as a response to the problems facing realist interpretations; Robertson and Wilson (forthcoming) propose ER to deal (...)
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  19. Annotating affective neuroscience data with the Emotion Ontology.Janna Hastings, Werner Ceusters, Kevin Mulligan & Barry Smith - 2012 - In Janna Hastings, Werner Ceusters, Kevin Mulligan & Barry Smith (eds.), Third International Conference on Biomedical Ontology. ICBO. pp. 1-5.
    The Emotion Ontology is an ontology covering all aspects of emotional and affective mental functioning. It is being developed following the principles of the OBO Foundry and Ontological Realism. This means that in compiling the ontology, we emphasize the importance of the nature of the entities in reality that the ontology is describing. One of the ways in which realism-based ontologies are being successfully used within biomedical science is in the annotation of scientific (...)
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  20.  42
    Critical Realism’s Critique of Methodological Individualism in Neoclassical Economics.S. M. Reza Amiri Tehrani - forthcoming - Persian Journal for the Methodology of Social Sciences and Humanities:1-24.
    The critique of philosophical foundations of neoclassical economics is significant, because of its hegemony on economic education and research programs in Iran and worldwide academies. Due to an epistemological fallacy, methodological individualism plays a prominent role in the philosophy of economic; since the ontological aspects of economy are reduced to methodological considerations. Accordingly, critique of methodological individualism is regarded as the main entry for philosophical analysis of neoclassical economics. This article aims to analyze and appraise the methodological individualism from critical (...)
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  21. Logic-Language-Ontology.Urszula B. Wybraniec-Skardowska - 2022 - Cham, Switzerland: Springer Nature, Birkhäuser, Studies in Universal Logic series.
    The book is a collection of papers and aims to unify the questions of syntax and semantics of language, which are included in logic, philosophy and ontology of language. The leading motif of the presented selection of works is the differentiation between linguistic tokens (material, concrete objects) and linguistic types (ideal, abstract objects) following two philosophical trends: nominalism (concretism) and Platonizing version of realism. The opening article under the title “The Dual Ontological Nature of Language Signs and the (...)
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  22. Establishing and Harmonizing Ontologies in an Interdisciplinary Health Care and Clinical Research Environment.Barry Smith & Mathias Brochhausen - 2008 - Studies in Health, Technology and Informatics 134:219-234.
    Ontologies are being ever more commonly used in biomedical informatics and we provide a survey of some of these uses, and of the relations between ontologies and other terminology resources. In order for ontologies to become truly useful, two objectives must be met. First, ways must be found for the transparent evaluation of ontologies. Second, existing ontologies need to be harmonised. We argue that one key foundation for both ontology evaluation and harmonisation is the adoption of a realist paradigm (...)
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  23. The Space Domain Ontologies.Alexander P. Cox, C. K. Nebelecky, R. Rudnicki, W. A. Tagliaferri, J. L. Crassidis & B. Smith - 2021 - In National Symposium on Sensor & Data Fusion Committee.
    Achieving space situational awareness requires, at a minimum, the identification, characterization, and tracking of space objects. Leveraging the resultant space object data for purposes such as hostile threat assessment, object identification, and conjunction assessment presents major challenges. This is in part because in characterizing space objects we reference a variety of identifiers, components, subsystems, capabilities, vulnerabilities, origins, missions, orbital elements, patterns of life, operational processes, operational statuses, and so forth, which tend to be defined in highly heterogeneous and sometimes inconsistent (...)
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  24. Social Ontology: Time to Compute.Igor Mikhailov - 2020 - Vestnik Tomskogo Gosudarstvennogo Universiteta. Filosofiya, Sotsiologiya, Politologiya 1 (55):36-46.
    Discussions on the alleged methodological specificity of social knowledge are fueled to not the least extent by a kind of retarded position of the latter against technological advancements of natural and information science based on exact methods and formal or quantitative languages. It is more or less obvious that applicability of exact scientific methods to social disciplines is highly dependent on a chosen conception of social reality, i. e., on social ontology. In the article, the author critically approaches (...)
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  25. Object-Oriented Ontology’s View of Relations: a Phenomenological Critique.Floriana Ferro - 2019 - Open Philosophy 2 (1):566-581.
    This paper is focused on the possibility of a dialogue between Object-Oriented Ontology (OOO) and phenomenology, a dialogue concerning the problem of objects and relations. In the first part, the author shows what is interesting in OOO from a phenomenological perspective and why it should be considered as a challenge for contemporary philosophy. The second part develops the phenomenological perspective of the author, a perspective based on Merleau-Ponty’s “carnal” phenomenology, as well as some suggestions coming from the Italian (...)
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  26. The Space Object Ontology.Alexander P. Cox, Christopher Nebelecky, Ronald Rudnicki, William Tagliaferri, John L. Crassidis & Barry Smith - 2016 - In 19th International Conference on Information Fusion (FUSION 2016). IEEE.
    Achieving space domain awareness requires the identification, characterization, and tracking of space objects. Storing and leveraging associated space object data for purposes such as hostile threat assessment, object identification, and collision prediction and avoidance present further challenges. Space objects are characterized according to a variety of parameters including their identifiers, design specifications, components, subsystems, capabilities, vulnerabilities, origins, missions, orbital elements, patterns of life, processes, operational statuses, and associated persons, organizations, or nations. The Space Object Ontology provides a consensus-based (...)
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  27. Higher-Order Defeat in Realist Moral Epistemology.Brian C. Barnett - 2019 - In Michael Klenk (ed.), Higher Order Evidence and Moral Epistemology. New York: Routledge. pp. 117-135.
    On an optimistic version of realist moral epistemology, a significant range of ordinary moral beliefs, construed in realist terms, constitute knowledge—or at least some weaker positive epistemic status, such as epistemic justification. The “debunking challenge” to this view grants prima facie justification but claims that it is “debunked” (i.e., defeated), yielding the final verdict that moral beliefs are ultima facie unjustified. Notable candidate “debunkers” (i.e., defeaters) include the so-called “evolutionary debunking arguments,” the “Benacerraf-Field Challenge,” and persistent moral disagreement among epistemic (...)
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  28. A Pragmatic Realism: Events, Powers, and Relations in the Metaphysics of Objective Relativism.Patrick John Taylor - 2013 - Dissertation, University of Oregon
    The early twentieth century witnessed the emergence of "objective relativism," a distinctly American school of metaphysical realism inspired by the works of John Dewey and A.N. Whitehead. Largely forgotten, objective relativism provided a metaphysical framework, based upon an ontology of events and relations rather than substances and discrete properties, that has continued relevance for contemporary metaphysical discussions. In this thesis, I attempt to chart the boundaries and pathways of this ontology, outlining what Dewey calls the "ground-map (...)
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  29. A plea for epistemic ontologies.Gilles Kassel - 2023 - Applied ontology 18 (4):367-397.
    In this article, we advocate the use of “epistemic” ontologies, i.e., systems of categories representing our knowledge of the world, rather than the world directly. We first expose a metaphysical framework based on a dual mental and physical realism, which underpins the development of these epistemic ontologies. To this end, we refer to the theories of intentionality and representation established within the school of Franz Brentano at the turn of the 20th century and choose to rehabilitate the notion (...)
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  30.  74
    Scientific perspectivism: realism, antirealism, or a new paradigm? / Научный перспективизм: реализм, антиреализм или новая парадигма?Vadim Chaly - 2022 - Tomsk State University Journal of Philosophy, Sociology and Political Science 70 (4):80-90.
    The current state of philosophy of science is characterized by stasis in the struggle between realism and antirealism. In recent years, a number of authors have come out with a program of scientific perspectivism that claims to sublate this great collision and gain the status of a new epistemological paradigm: “perspectivism, or, better, perspectival realism, is one of the newest attempts to find a middle ground between scientific realism and antirealism” [1. P. 2]. Important milestones of the (...)
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  31. A Critical Look on Critical Realism.Agustina Borella - 2012 - Perspectives on Epistemology of Economics:183-207.
    Tony Lawson, founder of The Social Ontology Group and The Realist Workshop of Cambridge, has proposed critical realism to reorient economics. The transformation of the social world that Lawson tries, emerges from the adherence to critical realism, this is, from taking the transcendental realism of Roy Bhaskar to the social realm. With the purpose of deepening the criticisms to this movement, we will specify what is critical realism, and which are the philosophical assumptions of the (...)
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  32.  34
    A brief review of realism and anti-realism in science (15th edition).Kim Euune-lim - unknown
    A brief review of realism and anti-realism in science Abstract: This paper delves into the realms of scientific realism and anti-realism, engaging in a comprehensive examination of their philosophical underpinnings. With an aim to introduce these fundamental concepts into Korean philosophical literature, the study navigates through the debates surrounding the nature of scientific inquiries and the extent to which they accurately represent the reality of the world. Scientific realists contend that scientific theories aspire to uncover genuine (...)
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  33. Bohmian mechanics without wave function ontology.Albert Solé - 2013 - Studies in History and Philosophy of Science Part B: Studies in History and Philosophy of Modern Physics 44 (4):365-378.
    In this paper, I critically assess different interpretations of Bohmian mechanics that are not committed to an ontology based on the wave function being an actual physical object that inhabits configuration space. More specifically, my aim is to explore the connection between the denial of configuration space realism and another interpretive debate that is specific to Bohmian mechanics: the quantum potential versus guidance approaches. Whereas defenders of the quantum potential approach to the theory claim that Bohmian mechanics (...)
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  34. πολλαχῶς ἔστι; Plato’s Neglected Ontology.Mohammad Bagher Ghomi - manuscript
    This paper aims to suggest a new approach to Plato’s theory of being in Republic V and Sophist based on the notion of difference and the being of a copy. To understand Plato’s ontology in these two dialogues we are going to suggest a theory we call Pollachos Esti; a name we took from Aristotle’s pollachos legetai both to remind the similarities of the two structures and to reach a consistent view of Plato’s ontology. Based on (...)
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  35. Human-Nonhuman Chimeras, Ontology, and Dignity: A Constructivist Approach to the Ethics of Conducting Research on Cross-Species Hybrids.Jonathan Vajda - 2016 - Hilltop Review: A Journal of Western Michigan University Graduate Student Research 9 (1):49-62.
    Developments in biological technology in the last few decades highlight the surprising and ever-expanding practical benefits of stem cells. With this progress, the possibility of combining human and nonhuman organisms is a reality, with ethical boundaries that are not readily obvious. These inter-species hybrids are of a larger class of biological entities called “chimeras.” As the concept of a human-nonhuman creature is conjured in our minds, either incredulous wonder or grotesque horror is likely to follow. This paper seeks to mitigate (...)
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  36. Where Are Facts? -- A Case for Internal Factual Realism.Xinli Wang - 2003 - Diálogos. Revista de Filosofía de la Universidad de Puerto Rico 38 (82):7-30.
    What is the ontological status of facts? Are facts linguistic or extra-linguistic entities? If facts are extra-linguistic entities, are they mind-independent or relative to languages, theories or conceptual schemes? Based on a minimal definition of facts, the author argues that what are specified by true statements are not identical to true propositions expressed, so facts are not linguistic entities. Furthermore, what are specified by true statements are not to which a true statement corresponds, so facts are not mind-independent, either (...)
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  37. OntONeo: The Obstetric and Neonatal Ontology.Fernanda Farinelli, Mauricio Almeida, Peter Elkin & Barry Smith - 2016 - In Dealing with elements of medical encounters: An approach based on ontological realism. Aachen: CEUR, vol. 1747.
    This paper presents the Obstetric and Neonatal Ontology (OntONeo). This ontology has been created to provide a consensus representation of salient electronic health record (EHR) data and to serve interoperability of the associated data and information systems. More generally, it will serve interoperability of clinical and translational data, for example deriving from genomics disciplines and from clinical trials. Interoperability of EHR data is important to ensuring continuity of care during the prenatal and postnatal periods for both mother and (...)
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  38. Mario Bunge and the Current Revival of Causal Realism.Rögnvaldur D. Ingthorsson - 2019 - In Michael R. Matthews (ed.), Mario Bunge: A Centenary Festschrift. Cham: Springer Verlag. pp. 205–217.
    Mario Bunge’s Causality and Modern Science is arguably one of the best treatments of the causal realist tradition ever to have been written, one that defends the place of causality as a category in the conceptual framework of modern science. And yet in the current revival of causal realism in contemporary metaphysics, there is very little awareness of Bunge’s work. This paper seeks to remedy this, by highlighting one particular criticism Bunge levels at the Aristotelian view of causation and (...)
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  39. Realizm modalny i okresy warunkowe z niemożliwymi poprzednikami [Modal Realism and Counterpossibles].Maciej Sendłak - 2014 - Filozofia Nauki 22 (4).
    To solve the problem of counterpossibles, many philosophers have been arguing that one needs to invoke impossible worlds. This extension of the ontology of modality should save the analysis of counterfactuals from being insensitive to the problem of counterpossibles. Since theories of impossible worlds are extensions of original accounts of modalities, it is worth stressing that proper analyses of counterpossibles should not weaken the latter.In this paper I argue that these theories of impossible wolrds, which are based on (...)
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  40. Relational Matters: A Critique of Speculative Realism and a Defence of Non-Reductive Materialism.Austin Lillywhite - 2017 - Chiasma: A Site for Thought 4:13-39.
    This essay critiques the return to objects posited by certain new materialisms, most specifically the speculative realism of Harman, Meillassoux and Brassier. It argues that their “non-relational” and “autonomous” ontology represents a neo-positivist conception of reality. In place of such an atomistic ontology, I will suggest that the new materialisms develop a more productive, “non-reductive materialism”—a term drawn from analytic philosophy of mind. I will interpret Merleau-Ponty and Jean-Luc Nancy as crucial examples of such a materialism on (...)
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  41. André Bazin's Eternal Returns: An Ontological Revision.Jeff Fort - 2021 - Film-Philosophy 25 (1):42-61.
    The recent publication of André Bazin's Écrits complets, an enormous two-volume edition of 3000 pages which increases ten-fold Bazin's available corpus, provides opportunities for renewed reflection on, and possibly for substantial revisions of, this key figure in film theory. On the basis of several essays, I propose a drastic rereading of Bazin's most explicitly philosophical notion of “ontology.” This all too familiar notion, long settled into a rather dust-laden couple nonetheless retains its fascination. Rather than attempting to provide a (...)
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  42. Remarks on logic for process descriptions in ontological reasoning: A Drug Interaction Ontology case study.Mitsuhiro Okada, Barry Smith & Yutaro Sugimoto - 2008 - In InterOntology. Proceedings of the First Interdisciplinary Ontology Meeting, Tokyo, Japan, 26-27 February 2008. Tokyo: Keio University Press. pp. 127-138.
    We present some ideas on logical process descriptions, using relations from the DIO (Drug Interaction Ontology) as examples and explaining how these relations can be naturally decomposed in terms of more basic structured logical process descriptions using terms from linear logic. In our view, the process descriptions are able to clarify the usual relational descriptions of DIO. In particular, we discuss the use of logical process descriptions in proving linear logical theorems. Among the types of reasoning supported by DIO (...)
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  43. No History to be Found: Denying Relations in the Name of Realism.Gilbert Bennett - 2022 - Epekeina: International Journal of Ontology History and Critics 14 (1):1-22.
    Rejecting or reforming anthropocentrism for the sake of human survival is a central moral challenge in our time. The rejection of anthropocentrism relies on the view that anthropocentrism has pervasively constituted the historical character of humankind and must be replaced in the future as understood by historical theory. This critique arises from new realist ontologies, including neo-materialisms and object-oriented ontology. Their rigid rejection of anthropocentrism requires the view of history and sociality proposed by proponents of object-oriented ontology. It (...)
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  44. BFO-based ontology enhancement to promote interoperability in BIM.Justine Flore Tchouanguem, Mohamed Hedi Karray, Bernard Kamsu Foguem, Camille Magniont, F. Henry Abanda & Barry Smith - 2021 - Applied ontology 16 (4):1–27.
    Building Information Modelling (BIM) is a process for managing construction project information in such a way as to provide a basis for enhanced decision-making and for collaboration in a construction supply chain. One impediment to the uptake of BIM is the limited interoperability of different BIM systems. To overcome this problem, a set of Industry Foundation Classes (IFC) has been proposed as a standard for the construction industry. Building on IFC, the ifcOWL ontology was developed in order to facilitate (...)
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  45. Scientific realism and ontology.Uskali Mäki - 2008 - In Steven N. Durlauf & Lawrence E. Blume (eds.), The New Palgrave Dictionary of Economics : volume 7 : real balances - stochastic volatility models. Palgrave-Macmillan.
    Economists customarily talk about the ‘realism’ of economic models and of their assumptions and make descriptive and prescriptive judgements about them: this model has more realism in it than that, the realism of assumptions does not matter, and so on. This is not the way philosophers mostly use the term ‘realism’ thus there is a major terminological discontinuity between the two disciplines. The following remarks organise and critically elaborate some of the philosophical usages of the term (...)
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  46. BABY-SIT: a computational medium based on situations.Erkan Tin & Varol Akman - 1993 - In Paul Dekker & Martin Stokhof (eds.), 9th Amsterdam Colloquium. Amsterdam, The Netherlands: Institute for Logic, Language and Computation.
    While situation theory and situation semantics provide an appropriate framework for a realistic model-theoretic treatment of natural language, serious thinking on their 'computational' aspects has just started. Existing proposals mainly offer a Prolog- or Lisp-like programming environment with varying degrees of divergence from the ontology of situation theory. In this paper, we introduce a computational medium (called BABY-SIT) based on situations. The primary motivation underlying BABY-SIT is to facilitate the development and testing of programs in domains ranging from (...)
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  47. The situations-based approach to deep worldly indeterminacy.George Darby & Martin Pickup - 2022 - In Valia Allori (ed.), Quantum Mechanics and Fundamentality: Naturalizing Quantum Theory between Scientific Realism and Ontological Indeterminacy. Cham: Springer.
    This paper concerns metaphysical indeterminacy and, in particular, the issue of whether quantum mechanics gives motivation for thinking the world contains it. In a previous paper (Darby G, Pickup M. Synthese 198:1685–1710, 2021), we have offered one way to think about metaphysical indeterminacy which we take to avoid some issues arising from certain features of quantum mechanics (such as the Kochen-Specker theorem). This approach has recently been criticised by Corti (Synthese, forthcoming), and we take this opportunity to respond. Our paper (...)
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  48. Process structural realism, instance ontology, and societal order.Joseph Earley - 2008 - In Franz Riffert and Hans-Joachim Sander (ed.), Rearching with Whitehead: System and Adventure. Berlin: Alber. pp. 190-211.
    Whitehead’s cosmology centers on the self-creation of actual occasions that perish as they come to be, but somehow do combine to constitute societies that are persistent agents and/or patients. “Instance Ontology” developed by D.W. Mertz concerns unification of relata into facts of relatedness by specific intensions. These two conceptual systems are similar in that they both avoid the substance-property distinction: they differ in their understanding of how basic units combine to constitute complex unities. “Process Structural Realism” (PSR) draws (...)
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  49. CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis.Oliver He, John Beverley, Gilbert S. Omenn, Barry Smith, Brian Athey, Luonan Chen, Xiaolin Yang, Junguk Hur, Hsin-hui Huang, Anthony Huffman, Yingtong Liu, Yang Wang, Edison Ong & Hong Yu - 2020 - Scientific Data 181 (7):5.
    Ontologies, as the term is used in informatics, are structured vocabularies comprised of human- and computer-interpretable terms and relations that represent entities and relationships. Within informatics fields, ontologies play an important role in knowledge and data standardization, representation, integra- tion, sharing and analysis. They have also become a foundation of artificial intelligence (AI) research. In what follows, we outline the Coronavirus Infectious Disease Ontology (CIDO), which covers multiple areas in the domain of coronavirus diseases, including etiology, transmission, epidemiology, pathogenesis, (...)
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  50. Referent Tracking for Command and Control Messaging Systems.Shahid Manzoor, Werner Ceusters & Barry Smith - 2009 - CEUR, Volume 555.
    The Joint Battle Management Language (JBML) is an XML-based language designed to allow Command and Control (C2) systems to interface easily with Modeling and Simulation (M&S) systems. While some of the XML-tags defined in this language correspond to types of entities that exist in reality, others are mere syntactic artifacts used to structure the messages themselves. Because these two kinds of tags are not formally distinguishable, JBML messages in effect confuse data with what the data represent. In this paper (...)
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