Results for 'Wei Ren'

206 found
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  1. Ameliorating Algorithmic Bias, or Why Explainable AI Needs Feminist Philosophy.Linus Ta-Lun Huang, Hsiang-Yun Chen, Ying-Tung Lin, Tsung-Ren Huang & Tzu-Wei Hung - 2022 - Feminist Philosophy Quarterly 8 (3).
    Artificial intelligence (AI) systems are increasingly adopted to make decisions in domains such as business, education, health care, and criminal justice. However, such algorithmic decision systems can have prevalent biases against marginalized social groups and undermine social justice. Explainable artificial intelligence (XAI) is a recent development aiming to make an AI system’s decision processes less opaque and to expose its problematic biases. This paper argues against technical XAI, according to which the detection and interpretation of algorithmic bias can be handled (...)
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  2. The foundation of phenomenological ethics: Intentional feelings.Wei Zhang - 2009 - Frontiers of Philosophy in China 4 (1):130-142.
    E. Husserl’s reflections in Logical Investigations on “intentional feelings” and “non-intentional feelings” are significant in both his later ethical explorations and M. Scheler’s thought on ethics. Through the incorporation of the views of Husserl and Scheler, we find that the phenomenology of the intentional feeling-acts is not only the foundation of the non-formal ethics of values in Scheler’s phenomenology, but also at least the constitutive foundation of the ethics of Husserl’s first orientation.
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  3. Between Saying and Doing: Aristotle and Speusippus on the Evaluation of Pleasure.Wei Cheng - 2024 - Apeiron (3):391-426.
    This study aims to provide a coherent new interpretation of the notorious anti-hedonism of Speusippus, Plato’s nephew and the second scholarch of the Academy, by reconsidering all the relevant sources concerning his attitude toward pleasure—sources that seem to be in tension or even incompatible with each other. By reassessing Speusippus’ anti-hedonism and Aristotle’s response, it also sheds new light on the Academic debate over pleasure in which he and Aristotle participated: This debate is not merely concerned with the truth and (...)
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  4.  68
    Experience as a Way of Knowing: The Knowledge Argument and Qualia.Huiming Ren - 2024 - Journal of Human Cognition 8 (1):3-21.
    It is first shown that many questions could be raised about phenomenal concepts and the popular answer to the question what Mary learns upon release, namely, that this is what it is like to see red. It is then shown that the category of quale is actually a postulate of philosophical theories and philosophers posit qualia because they fail to see how to account for the two related features of experience, namely, subjectivity and phenomenality. It is argued that we don't (...)
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  5. An Inferential Account of Model Explanation.Wei Fang - 2019 - Philosophia 47 (1):99-116.
    This essay develops an inferential account of model explanation, based on Mauricio Suárez’s inferential conception of scientific representation and Alisa Bokulich’s counterfactual account of model explanation. It is suggested that the fact that a scientific model can explain is essentially linked to how a modeler uses an established model to make various inferences about the target system on the basis of results derived from the model. The inference practice is understood as a two-step activity, with the first step involving making (...)
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  6.  32
    Responses to comments from Haoying Liu and Feng Yu.Huiming Ren - 2024 - Journal of Human Cognition 8 (1):37-38.
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  7. Aristotle’s Vocabulary of Pain.Wei Cheng - 2019 - Philologus: Zeitschrift für Antike Literatur Und Ihre Rezeption 163 (1):47-71.
    This paper examines Aristotle’s vocabulary of pain, that is the differences and relations of the concepts of pain expressed by synonyms in the same semantic field. It investigates what is particularly Aristotelian in the selection of the pain-words in comparison with earlier authors and specifies the special semantic scope of each word-cluster. The result not only aims to pin down the exact way these terms converge with and diverge from each other, but also serves as a basis for further understanding (...)
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  8. Aristotle and Eudoxus on the Argument from Contraries.Wei Cheng - 2020 - Archiv für Geschichte der Philosophie 102 (4):588-618.
    The debate over the value of pleasure among Eudoxus, Speusippus, and Aristotle is dramatically documented by the Nicomachean Ethics, particularly in the dialectical pros-and-cons concerning the so-called argument from contraries. Two similar versions of this argument are preserved at EN VII. 13, 1153b1–4, and X. 2, 1172b18–20. Many scholars believe that the argument at EN VII is either a report or an appropriation of the Eudoxean argument in EN X. This essay aims to revise this received view. It will explain (...)
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  9. Holistic modeling: an objection to Weisberg’s weighted feature-matching account.Wei Fang - 2017 - Synthese 194 (5):1743–1764.
    Michael Weisberg’s account of scientific models concentrates on the ways in which models are similar to their targets. He intends not merely to explain what similarity consists in, but also to capture similarity judgments made by scientists. In order to scrutinize whether his account fulfills this goal, I outline one common way in which scientists judge whether a model is similar enough to its target, namely maximum likelihood estimation method. Then I consider whether Weisberg’s account could capture the judgments involved (...)
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  10. The case for multiple realization in biology.Wei Fang - 2018 - Biology and Philosophy 33 (1-2):3.
    Polger and Shapiro argue that their official recipe, a criterion for judging when the phenomenon of multiple realization exists, renders MR less widespread than its proponents have assumed. I argue that, although Polger and Shapiro’s criterion is a useful contribution, they arrive at their conclusion too hastily. Contrary to Polger and Shapiro, I claim that the phenomenon of multiple realization in the biological world, judged by their criterion, is not as scarce as they suggest. To show this, an updated official (...)
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  11. Toward Mechanism 2.1: A Dynamic Causal Approach.Wei Fang - 2021 - Philosophy of Science 88 (5):796-809.
    I propose a dynamic causal approach to characterizing the notion of a mechanism. Levy and Bechtel, among others, have pointed out several critical limitations of the new mechanical philosophy, and pointed in a new direction to extend this philosophy. Nevertheless, they have not fully fleshed out what that extended philosophy would look like. Based on a closer look at neuroscientific practice, I propose that a mechanism is a dynamic causal system that involves various components interacting, typically nonlinearly, with one another (...)
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  12. Die Intentionalität des Fühlens und die Schichtung der emotionalen Sphäre: Die fundamentalen Fragen in Max Schelers Phänomenologie des Fühlens.Wei Zhang - 2010 - Bulletin d'Analyse Phénoménologique 6:1-20.
    Les questions les plus fondamentales de la phénoménologie du sentir de Max Scheler concernent la place de l’intentionnalité dans la phénoménologie du sentir et la structuration de la sphère émotionnelle. Dans la première section, nous nous focaliserons avant tout sur la différence entre les sentiments non intentionnels et le sentir intentionnel, en comparant sur ce point les positions de Scheler et de Husserl. En effet, Scheler critique ces deux thèses fondamentales de Husserl: 1) les actes affectifs et leurs corrélats (« (...)
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  13. Speusippus, teleology and the metaphysics of value: Theophrastus’ Metaphysics 11a18–26.Wei Cheng - 2020 - Journal of Hellenic Studies 140:143-175.
    This paper reexamines Theophrastus’ Metaphysics 11a18–26, an obscure testimony about Speusippus, the second head of the Platonic Academy. As opposed to the traditional interpretation, which takes this passage as Theophrastus’ polemic against Speusippus’ doctrine of value, I argue that he here dialectically takes advantage of, rather than launches an attack on, the Platonist. Based on this new reading, I further propose a revision and a reassessment of the ‘gloomy metaphysics’ of Speusippus which will shed new light on his ethics.
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  14. A Battle Against Pain? Aristotle, Theophrastus and the Physiologoi in Aspasius, On Nicomachean Ethics 156.14-20.Wei Cheng - 2017 - Phronesis 62 (4):392-416.
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  15. (2 other versions)Scheler's Critique of Husserl's Phenomenological Understanding of "Objective a priori".Wei Zhang - 2011 - Prolegomena 10 (2):265-280.
    On the one hand, Scheler's critique of Kant's concept of a priori benefits from Husserl to a large extent, and it complements and deepens Husserl's. On the other hand, Scheler also critiques Husserl's definition of a priori. Husserl's material a priori as ideal object primarily thanks to his so-called "Bolzano- turn". In this connection, Scheler grabs hold of the relation of Husserl to Bolzano from the very beginning. For Scheler, Husserl thinks in a "platonic" way, and still falls in a (...)
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  16. Menschenwürde, Persönlichkeit und die verfassungsmäßige Kontrolle. Oder: starke Normativität ohne Metaphysik?Wei Feng - 2021 - Archiv Für Rechts- Und Sozialphilosophie, Beiheft 165:23-61.
    The concept of human dignity has been criticized as either too thick or too thin. However, according to the non-positivistic standpoint, the legal normativity of human dignity can be justified and thus strengthened by means of its moral correctness. From the individual perspective, Mencius’ understanding of human dignity as an intrinsic value and Kant’s formula of ‘man as an end in itself’ can be adequately understood based on the differentiation of, as well as the connection between, principium diiudicationis and principium (...)
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  17. A Summary of Michael Walzer's "The Problem of Dirty Hands".Coco Ke Ren - manuscript
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  18. Methodenfrage der Rechtswissenschaft in China: Rückblick und Ausblick.Wei Feng - 2016 - In Yuanshi Bu (ed.), Juristische Methodenlehre in China und Ostasien. Mohr Siebeck. pp. 45-75.
    Die Disziplin, die als „Juristische Methodenlehre“ bezeichnet wird, ist gegenwärtig chinesischen Juristen nicht fremd, sie stammt aber ursprünglich aus dem deutschen Sprachraum. In der Literatur finden sich auch verwandte Ausdrücke wie „Juristische Methodologie“, „Juristische Methodik“ bzw.„Methodenlehre der Rechtswissenschaft“. Seit Anfang des 21. Jahrhunderts wurde ihre Rezeption in China durch zwei Übersetzungen gekennzeichnet, nämlich die „rechtswissenschaftliche Methodenlehre“ (faxue fangfalun) und die „rechtliche Methodenlehre“ (falü fangfalun). Neben der herkömmlichen Methodenlehre entwickelte sich auch eine jüngere Theorie der juristischen Argumentation, die die weltweite Aufmerksamkeit (...)
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  19. Dyschereia and Aporia: The Formation of a Philosophical Term.Wei Cheng - 2018 - TAPA 148 (1):75-110.
    Plato’s nephew Speusippus has been widely accepted as the historical person behind the mask of the anti-hedonists in Phlb. 42b–44c. This hypothesis is supported by, inter alia, the link between Socrates’ char- acterization of them as δυσχερεῖς and the frequent references of δυσχέρεια as ἀπορία to Speusippus in Aristotle’s Metaphysics MN. This study argues against assigning any privileged status to Speusippus in the assimilation of δυσχέρεια with ἀπορία. Instead, based on a comprehensive survey of how δυσχερ- words were used in (...)
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  20.  39
    Agency and Intentionality for Artificial Agents.Yidong Wei - 2024 - Journal of Human Cognition 8 (2):5-7.
    In this paper, the author will explore the relationship between agency and intentionality of the artificial agent in the following seven ways.
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  21. Non-Positivism and Encountering a Weakened Necessity of the Separation between Law and Morality – Reflections on the Debate between Robert Alexy and Joseph Raz.Wei Feng - 2019 - Archiv Für Rechts- Und Sozialphilosophie, Beiheft 158:305-334.
    Nearly thirty years ago, Robert Alexy in his book The Concept and Validity of Law as well as in other early articles raised non-positivistic arguments in the Continental European tradition against legal positivism in general, which was assumed to be held by, among others, John Austin, Hans Kelsen and H.L.A. Hart. The core thesis of legal positivism that was being discussed among contemporary German jurists, just as with their Anglo- American counterparts, is the claim that there is no necessary connection (...)
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  22. Neutral, Natural and Hedonic State in Plato.Wei Cheng - 2019 - Mnemosyne 4 (72):525-549.
    This paper aims to clarify Plato’s notions of the natural and the neutral state in relation to hedonic properties. Contra two extreme trends among scholars—people either conflate one state with the other, or keep them apart as to establish an unsurmount- able gap between both states, I argue that neither view accurately reflects Plato’s position because the natural state is real and can coincide with the neutral state in part, whereas the latter, as an umbrella term, can also be realized (...)
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  23. Rational a priori or Emotional a priori? Husserl and Scheler’s Criticisms of Kant Regarding the Foundation of Ethics.Wei Zhang - 2011 - Cultura 8 (2):143-158.
    Based on the dispute between Protagoras and Socrates on the origin of ethics, one can ask the question of whether the principle of ethics is reason orfeeling/emotion, or whether ethics is grounded on reason or feeling/emotion. The development of Kant’s thoughts on ethics shows the tension between reason and feeling/emotion. In Kant’s final critical ethics, he held to a principle of “rational a priori.” On the one hand, this is presented as the rational a priori principle being the binding principle (...)
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  24. Hierarchy, Formal Principles, and a Non-Positivistic Constitutionalism. Comments on Gabriel Encinas’ ‘Interlegal Balancing’.Wei Feng - 2020 - Working Papers of Center for Interlegality Research.
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  25. (1 other version)Seeing subjectivity: defending a perceptual account of other minds.Joel Krueger & Søren Overgaard - 2012 - ProtoSociology (47):239-262.
    The problem of other minds has a distinguished philosophical history stretching back more than two hundred years. Taken at face value, it is an epistemological question: it concerns how we can have knowledge of, or at least justified belief in, the existence of minds other than our own. In recent decades, philosophers, psychologists, neuroscientists, anthropologists and primatologists have debated a related question: how we actually go about attributing mental states to others (regardless of whether we ever achieve knowledge or rational (...)
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  26. Needs as Reference Points – When Marginal Gains to the Poor do not Matter.Arne Robert Weiß, Alexander Max Bauer & Stefan Traub - manuscript
    Imagine that only the state can meet the need for housing but decides not to do so. Unsurprisingly, participants in a vignette experiment deem this scenario unjust. Hence, justice ratings increase when the living situation improves. To a lesser extent, this also holds beyond the need threshold, understood as the minimum amount necessary for a decent life. Surprisingly, however, the justice evaluation function is highly convex below this point. The resulting S-shaped curve is akin to the value function in prospect (...)
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  27. Multilevel Modeling and the Explanatory Autonomy of Psychology.Wei Fang - 2020 - Philosophy of the Social Sciences 50 (3):175-194.
    This article argues for the explanatory autonomy of psychology drawing on cases from the multilevel modeling practice. This is done by considering a multilevel linear model in personality and social psychology, and discussing its philosophical implications for the reductionism debate in philosophy of psychology. I argue that this practice challenges the reductionist position in philosophy of psychology, and supports the explanatory autonomy of psychology.
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  28. Global bioethics – myth or reality?Søren Holm & Bryn Williams-Jones - 2006 - BMC Medical Ethics 7 (1):1-10.
    Background There has been debate on whether a global or unified field of bioethics exists. If bioethics is a unified global field, or at the very least a closely shared way of thinking, then we should expect bioethicists to behave the same way in their academic activities anywhere in the world. This paper investigates whether there is a 'global bioethics' in the sense of a unified academic community. Methods To address this question, we study the web-linking patterns of bioethics institutions, (...)
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  29. Dignidad humana, personalidad y control de constitucionalidad. ¿Normatividad fuerte sin metafísica?Wei Feng - 2022 - UNIVERSITAS. Revista de Filosofía, Derecho y Política 37:2-50.
    El concepto de dignidad humana ha sido considerado o demasiado denso o demasiado delgado. Sin embargo, desde el punto de vista del no-positivismo, la normatividad jurídica de la dignidad humana puede ser justificada y reforzada por medio de su corrección moral. Desde una perspectiva individual, la comprensión de Mencio sobre la dignidad humana como un valor intrínseco y el imperativo categórico de Kant (el ser humano como un fin en sí mismo) podrían ser adecuadamente comprendidos con base en la diferencia (...)
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  30. Organoid Biobanking, Autonomy and the Limits of Consent.Jonathan Lewis & Søren Holm - 2022 - Bioethics 36 (7):742-756.
    In the debates regarding the ethics of human organoid biobanking, the locus of donor autonomy has been identified in processes of consent. The problem is that, by focusing on consent, biobanking processes preclude adequate engagement with donor autonomy because they are unable to adequately recognise or respond to factors that determine authentic choice. This is particularly problematic in biobanking contexts associated with organoid research or the clinical application of organoids because, given the probability of unforeseen and varying purposes for which (...)
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  31. Donation, Control and the Ownership of Conscious Things.Søren Holm & Jonathan Lewis - 2022 - American Journal of Bioethics Neuroscience 13 (2):106-108.
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  32. Patient Autonomy, Clinical Decision Making, and the Phenomenological Reduction.Jonathan Lewis & Søren Holm - 2022 - Medicine, Health Care and Philosophy 25 (4):615-627.
    Phenomenology gives rise to certain ontological considerations that have far-reaching implications for standard conceptions of patient autonomy in medical ethics, and, as a result, the obligations of and to patients in clinical decision-making contexts. One such consideration is the phenomenological reduction in classical phenomenology, a core feature of which is the characterisation of our primary experiences as immediately and inherently meaningful. This paper builds on and extends the analyses of the phenomenological reduction in the works of Husserl, Heidegger, and Merleau-Ponty (...)
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  33. Aristotelian emotions. M. krewet die theorie der gefühle bei aristoteles. Pp. 648. Heidelberg: Universitätsverlag winter, 2011. Paper, €64. Isbn: 978-3-8253-5825-9. [REVIEW]Wei Cheng - 2016 - The Classical Review 66 (1):62-64.
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  34. Orality and literacy 10. R. Scodel between orality and literacy: Communication and adaptation in antiquity. Orality and literacy in the ancient world, vol. 10. pp. X + 387, ills. Leiden and boston: Brill, 2014. Cased, €134, us$174. Isbn: 978-90-04-26912-5. [REVIEW]Wei Cheng - 2016 - The Classical Review 66 (1):5-7.
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  35. Social perception and “spectator theories” of other minds.Søren Overgaard & Joel Krueger - 2013 - Behavioral and Brain Sciences 36 (4):434 - 435.
    We resist Schilbach et al.’s characterization of the “social perception” approach to social cognition as a “spectator theory” of other minds. We show how the social perception view acknowledges the crucial role interaction plays in enabling social understanding. We also highlight a dilemma Schilbach et al. face in attempting to distinguish their second person approach from the social perception view.
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  36. Towards a Concept of Embodied Autonomy: In what ways can a Patient’s Body contribute to the Autonomy of Medical Decisions?Jonathan Lewis & Søren Holm - 2023 - Medicine, Health Care and Philosophy 26 (3):451-463.
    “Bodily autonomy” has received significant attention in bioethics, medical ethics, and medical law in terms of the general inviolability of a patient’s bodily sovereignty and the rights of patients to make choices (e.g., reproductive choices) that concern their own body. However, the role of the body in terms of how it can or does contribute to a patient’s capacity for, or exercises of their autonomy in clinical decision-making situations has not been explicitly addressed. The approach to autonomy in this paper (...)
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  37. Cognitive Science Research on The Relationship Between Personality and Emotion.Wu Wei & Keqin Kong - 2019 - Journal of Human Cognition 3 (1):5-12.
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  38.  34
    Should research misconduct be criminalized?Rafael Dal-Ré, Lex M. Bouter, Pim Cuijpers, Christian Gluud & Søren Holm - 2020 - Research Ethics 16 (1-2):1-12.
    For more than 25 years, research misconduct is defined as fabrication, falsification, or plagiarism —although other research misbehaviors have been also added in codes of cond...
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  39. Księga o Adlerze.Søren Kierkegaard - 2011 - Argument: Biannual Philosophical Journal 1 (1):132-142.
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  40. Paternalism Is Not Less Wrong in Intimate Relationships.Andreas Bengtson & Søren Flinch Midtgaard - forthcoming - Journal of Moral Philosophy:1-32.
    Many believe that paternalism is less wrong in intimate relationships. In this paper, we argue that this view cannot be justified by appeal to (i) beneficence, (ii) shared projects, (iii) vulnerability, (iv) epistemic access, (v) expressivism, or (vi) autonomy as nonalienation. We finally provide an error theory for why many may have believed that paternalism is less wrong in intimate relations.
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  41. Existing Problems in Improvement of Capital Mobilization in Vietnam Bank for Social Policies.Hoang Minh Hien & Wei Huai An - 2019 - International Journal of Academic Multidisciplinary Research (IJAMR) 3 (5):66-72.
    Abstract: In 16 years of Vietnam Bank for Social Policies (VBSP) operation, although mobilized capital has basically met the demand for loans of poor households and other policy beneficiaries, there are still certain limitations. This study is aimed to assess the remaining difficulties in raising capital in VBSP. Research results are surveys of capital mobilization at 8 VBSP’s provinical branches and questionnaire to customers, staff at branches of VBSP across Vietnam. The key problem is mechanism of creating capital source, which (...)
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  42. Embodied Cognition View: The Return of Body as Subject in Cognitive Science Research.Bo Chen, Wei Chen & Jun Ding - 2019 - Journal of Human Cognition 3 (1):54-75.
    The view of embodied cognition believes that cognition is embodied in nature, only the dynamics involved in the interaction between cognitive activities and the nervous system, body and environment, only by closely linking the correct evaluation of time-dependent and relationship, then only can make a correct understanding of cognitive activities. The core concepts of body and environment involved in embodied cognition are different from the body and environment in the usual sense. In terms of research methods, dynamic research methods that (...)
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  43. Impact of COVID-19 on liver transplantation in Hong Kong and Singapore: A modelling study.Eunice Tan, Wei Liang Quek, Haroun Chahed, Shridhar Ganpathi Iyer, Prema Raj Jeyaraj, Guan-Huei Lee, Albert Chan, Stephanie Cheng, Jan Hoe, Ek Khoon Tan, Lock Yue Chew, James Fung, Melvin Chen, Mark Muthiah & Daniel Huang - 2021 - The Lancet Regional Health-Western Pacific 16:100262.
    Liver transplantation (LT) activities during the COVID-19 pandemic have been curtailed in many countries. The impact of various policies restricting LT on outcomes of potential LT candidates is unclear. We studied all patients on the nationwide LT waitlists in Hong Kong and Singapore between January 2016 and May 2020. We used continuous time Markov chains to model the effects of different scenarios and varying durations of disruption on LT candidates.
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  44. Abortion.Jonathan Lewis & Søren Holm - 2017 - In Mortimer Sellers & Stephan Kirste (eds.), Encyclopedia of the Philosophy of Law and Social Philosophy. Springer. pp. 1-8.
    Abortion remains a highly controversial issue in many countries and subject to intense public debate. The aim of this chapter is to summarize the most prominent assumptions and arguments concerning the moral and legal dimensions of abortion on which this debate rests. Where the moral justifiability of abortion is concerned, this chapter focuses on arguments relating to the moral status of the fetus or embryo, the notion of personhood, the biological development of the embryo or fetus, and the moral relevance (...)
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  45. The Gap between Intelligence and Mind.Bowen Xu, Xinyi Zhan & Quansheng Ren - manuscript
    The feeling brings the "Hard Problem" to philosophy of mind. Does the subjective feeling have a non-ignorable impact on Intelligence? If so, can the feeling be realized in Artificial Intelligence (AI)? To discuss the problems, we have to figure out what the feeling means, by giving a clear definition. In this paper, we primarily give some mainstream perspectives on the topic of the mind, especially the topic of the feeling (or qualia, subjective experience, etc.). Then, a definition of the feeling (...)
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  46. Stop agonising over informed consent when researchers use crowdsourcing platforms to conduct survey research.Jonathan Lewis, Vilius Dranseika & Søren Holm - 2023 - Clinical Ethics 18 (4):343-346.
    Research ethics committees and institutional review boards spend considerable time developing, scrutinising, and revising specific consent processes and materials for survey-based studies conducted on crowdsourcing and online recruitment platforms such as MTurk and Prolific. However, there is evidence to suggest that many users of ICT services do not read the information provided as part of the consent process and they habitually provide or refuse their consent without adequate reflection. In principle, these practices call into question the validity of their consent. (...)
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  47. Metaphysik - Metaphysikkritik - Neubegründung der Erkenntnis: Der Ertrag der Denkbewegung von Kant bis Hegel.Héctor Ferreiro & Thomas Sören Hoffmann (eds.) - 2016 - Berlin: Duncker & Humblot.
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  48. A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian Athey & Barry Smith - 2022 - Journal of Biomedical Semantics 13 (1):25.
    The current COVID-19 pandemic and the previous SARS/MERS outbreaks of 2003 and 2012 have resulted in a series of major global public health crises. We argue that in the interest of developing effective and safe vaccines and drugs and to better understand coronaviruses and associated disease mechenisms it is necessary to integrate the large and exponentially growing body of heterogeneous coronavirus data. Ontologies play an important role in standard-based knowledge and data representation, integration, sharing, and analysis. Accordingly, we initiated the (...)
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  49. Perspectival shapes are viewpoint-dependent relational properties.Tony Cheng, Yi Lin & Chen-Wei Wu - 2022 - Psychological Review (1):307-310.
    Recently, there is a renewed debate concerning the role of perspective in vision. Morales et al. (2020) present evidence that, in the case of viewing a rotated coin, the visual system is sensitive to what has often been called “perspectival shapes.” It has generated vigorous discussions, including an online symposium by Morales and Cohen, an exchange between Linton (2021) and Morales et al. (2021), and most recently, a fierce critique by Burge and Burge (2022), in which they launch various conceptual (...)
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  50. Protein Ontology: Enhancing and scaling up the representation of protein entities.Darren A. Natale, Cecilia N. Arighi, Judith A. Blake, Jonathan Bona, Chuming Chen, Sheng-Chih Chen, Karen R. Christie, Julie Cowart, Peter D'Eustachio, Alexander D. Diehl, Harold J. Drabkin, William D. Duncan, Hongzhan Huang, Jia Ren, Karen Ross & Alan Ruttenberg - 2017 - Nucleic Acids Research 45 (D1):D339-D346.
    The Protein Ontology (PRO; http://purl.obolibrary.org/obo/pr) formally defines and describes taxon-specific and taxon-neutral protein-related entities in three major areas: proteins related by evolution; proteins produced from a given gene; and protein-containing complexes. PRO thus serves as a tool for referencing protein entities at any level of specificity. To enhance this ability, and to facilitate the comparison of such entities described in different resources, we developed a standardized representation of proteoforms using UniProtKB as a sequence reference and PSI-MOD as a post-translational modification (...)
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