- Coordinating virus research: The Virus Infectious Disease Ontology.John Beverley, Shane Babcock, Gustavo Carvalho, Lindsay G. Cowell, Sebastian Duesing, Yongqun He, Regina Hurley, Eric Merrell, Richard H. Scheuermann & Barry Smith - 2024 - PLoS ONE 1.details
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Why Machines Will Never Rule the World: Artificial Intelligence without Fear.Jobst Landgrebe & Barry Smith - 2022 - Abingdon, England: Routledge.details
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Towards a dispositionalist (and unifying) account of addiction.Robert M. Kelly - 2023 - Theoretical Medicine and Bioethics 44 (1):21-40.details
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The bridge between philosophy and information-driven science.Barry Smith - 2021 - Journal of Knowledge Structures and Systems 2 (2):47-55.details
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The Full Bayesian Significance Test for Mixture Models: Results in Gene Expression Clustering.Julio Michael Stern, Marcelo de Souza Lauretto & Carlos Alberto de Braganca Pereira - 2008 - Genetics and Molecular Research 7 (3):883-897.details
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Mapping the Patient’s Experience: An Applied Ontological Framework for Phenomenological Psychopathology.Rasmus Rosenberg Larsen & Janna Hastings - 2020 - Phenomenology and Mind 18:200-219.details
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Silencing trust: confidence and familiarity in re-engineering knowledge infrastructures.Rune Nydal, Gaymon Bennett, Martin Kuiper & Astrid Lægreid - 2020 - Medicine, Health Care and Philosophy 23 (3):471-484.details
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Making AI Meaningful Again.Jobst Landgrebe & Barry Smith - 2021 - Synthese 198 (March):2061-2081.details
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The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin L. Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud & Pankaj Jaiswal - 2018 - Nucleic Acids Research 46 (D1):D1168–D1180.details
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Interdyscyplinarne perspektywy rozwoju, integracji i zastosowań ontologii poznawczych.Joanna Hastings, Gwen A. Frishkoff, Barry Smith, Mark Jensen, Russell A. Poldrack, Jane Lomax, Anita Bandrowski, Fahim Imam, Jessica A. Turner & Maryann E. Martone - 2016 - Avant: Trends in Interdisciplinary Studies 7 (3):101-117.details
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How to Understand the Gene in the Twenty-First Century?Lia Midori Nascimento Meyer, Gilberto Cafezeiro Bomfim & Charbel Niño El-Hani - 2013 - Science & Education 22 (2):345-374.details
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On the application of formal principles to life science data: A case study in the Gene Ontology.Jacob Köhler, Anand Kumar & Barry Smith - 2004 - In Köhler Jacob, Kumar Anand & Smith Barry (eds.), Proceedings of DILS 2004 (Data Integration in the Life Sciences), (Lecture Notes in Bioinformatics 2994). Springer. pp. 79-94.details
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National Center for Biomedical Ontology: Advancing biomedicine through structured organization of scientific knowledge.Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, Misra Sima, Westerfield Monte, Ashburner Michael, Christopher G. Chute, Ida Sim, Harold Solbrig, M. A. Storey, Barry Smith, John D. Richter, Natasha Noy & Mark A. Musen - 2006 - Omics: A Journal of Integrative Biology 10 (2):185-198.details
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A domain ontology for the non-coding RNA field.Jingshan Huang, Karen Eilbeck, Judith A. Blake, Dejing Dou, Darren A. Natale, Alan Ruttenberg, Barry Smith, Michael T. Zimmermann, Guoqian Jiang & Yu Lin - 2015 - In Huang Jingshan, Eilbeck Karen, Blake Judith A., Dou Dejing, Natale Darren A., Ruttenberg Alan, Smith Barry, Zimmermann Michael T., Jiang Guoqian & Lin Yu (eds.), IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2015). pp. 621-624.details
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Developing the Quantitative Histopathology Image Ontology : A case study using the hot spot detection problem.Metin Gurcan, Tomaszewski N., Overton John, A. James, Scott Doyle, Alan Ruttenberg & Barry Smith - 2017 - Journal of Biomedical Informatics 66:129-135.details
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The development of non-coding RNA ontology.Jingshan Huang, Karen Eilbeck, Barry Smith, Judith Blake, Deijing Dou, Weili Huang, Darren Natale, Alan Ruttenberg, Jun Huan, Michael Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison Strachan, Nisansa de Silva & Mohan Vamsi Kasukurthi - 2016 - International Journal of Data Mining and Bioinformatics 15 (3):214--232.details
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Interdisciplinary perspectives on the development, integration and application of cognitive ontologies.Janna Hastings, Gwen Alexandra Frishkoff, Barry Smith, Mark Jensen, Russell Poldrack, Jessica Turner, Jane Lomax, Anita Bandrowski, Fahim Imam, Jessica A. Turner & Maryann E. Martone - 2014 - Frontiers in Neuroinformatics 8 (62):1-7.details
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The representation of protein complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.details
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The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis.Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Lin Yu, Alfred Hero, Barry Smith & Yongqun He - 2016 - Journal of Biomedical Semantics 7 (53).details
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FueL: Representing function structure and function dependencies with a UML profile for function modeling.Patryk Burek, Frank Loebe & Heinrich Herre - 2016 - Applied ontology 11 (2):155-203.details
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Applied ontology: The next decade begins.Nicola Guarino & Mark Musen - 2015 - Applied ontology 10 (1):1-4.details
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Functions in Basic Formal Ontology.Andrew D. Spear, Werner Ceusters & Barry Smith - 2016 - Applied ontology 11 (2):103-128.details
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The Ontology for Biomedical Investigations.Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H. Brush, Bill Bug, Marcus C. Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Frank Gibson, Alejandra Gonzalez-Beltran, Melissa A. Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez-Boussard, Mark Jensen, Yu Lin, Allyson L. Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A. Overton, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Daniel Schober, Barry Smith, Larisa N. Soldatova, Christian J. Stoeckert, Chris F. Taylor, Carlo Torniai, Jessica A. Turner, Randi Vita, Patricia L. Whetzel & Jie Zheng - 2016 - PLoS ONE 11 (4):e0154556.details
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The Relevance of Philosophical Ontology to Information and Computer Science.Barry Smith - 2014 - In Ruth Hagenbruger & Uwe V. Riss (eds.), Philosophy, computing and information science. Pickering & Chattoo. pp. 75-83.details
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The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.Laurel Cooper, Ramona Walls, Justin Elser, Maria A. Gandolfo, Dennis W. Stevenson, Barry Smith & Others - 2013 - Plant and Cell Physiology 54 (2):1-23..details
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The Neurological Disease Ontology.Mark Jensen, Alexander P. Cox, Naveed Chaudhry, Marcus Ng, Donat Sule, William Duncan, Patrick Ray, Bianca Weinstock-Guttman, Barry Smith, Alan Ruttenberg, Kinga Szigeti & Alexander D. Diehl - 2013 - Journal of Biomedical Semantics 4 (42):42.details
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Distributed robustness versus redundancy as causes of mutational robustness.Andreas Wagner - 2005 - Bioessays 27 (2):176-188.details
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The RNA Ontology (RNAO): an ontology for integrating RNA sequence and structure data.Robert Hoehndorf, Colin Batchelor, Thomas Bittner, Michel Dumontier, Karen Eilbeck, Rob Knight, Chris J. Mungall, Jane S. Richardson, Jesse Stombaugh & Eric Westhof - 2011 - Applied ontology 6 (1):53-89.details
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Classificatory Theory in Data-intensive Science: The Case of Open Biomedical Ontologies.Sabina Leonelli - 2012 - International Studies in the Philosophy of Science 26 (1):47 - 65.details
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Towards an Ontology of Cognitive Control.Agatha Lenartowicz, Donald J. Kalar, Eliza Congdon & Russell A. Poldrack - 2010 - Topics in Cognitive Science 2 (4):678-692.details
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A survey of requirements for automated reasoning services for bio-ontologies in OWL.M. Scott Marshall, C. Maria Keet & Marco Roos - unknowndetails
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Biomedical Ontologies.Barry Smith - 2022 - In Peter L. Elkin (ed.), Terminology, Ontology and Their Implementations: Teaching Guide and Notes. Springer. pp. 125-169.details
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Conceptual Challenges in the Theoretical Foundations of Systems Biology.Marta Bertolaso & Emanuele Ratti - 2018 - In Mariano Bizzarri (ed.), Systems Biology. Springer, Humana Press. pp. 1-13.details
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Modelling Molecular Mechanisms: A Framework of Scientific Reasoning to Construct Molecular-Level Explanations for Cellular Behaviour.Marc H. W. van Mil, Dirk Jan Boerwinkel & Arend Jan Waarlo - 2013 - Science & Education 22 (1):93-118.details
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From Berman and Hafner’s teleological context to Baude and Sachs’ interpretive defaults: an ontological challenge for the next decades of AI and Law.Ronald P. Loui - 2016 - Artificial Intelligence and Law 24 (4):371-385.details
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Analysing Network Models to Make Discoveries about Biological Mechanisms.William Bechtel - 2019 - British Journal for the Philosophy of Science 70 (2):459-484.details
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Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge Base.Jiye Ai, Barry Smith & David Wong - 2010 - BMC Bioinformatics 11 (1):302.details
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The dynamic status of actin in the regulation of environmental sensing and homeostatic control in Saccharomyces cerevisiae.Daniel George Jan Smethurst - unknowndetails
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Interdisciplinary Collaboration in Philosophy.Alexis Dyschkant Andrew Higgins - 2014 - Metaphilosophy 45 (3):372-398.details
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Ontology development is consensus creation, not (merely) representation.Fabian Neuhaus & Janna Hastings - 2022 - Applied ontology 17 (4):495-513.details
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What do molecular biologists mean when they say 'structure determines function'?Gregor P. Greslehner - unknowndetails
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From commonsense to science, and back: The use of cognitive concepts in neuroscience.Jolien C. Francken & Marc Slors - 2014 - Consciousness and Cognition 29:248-258.details
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Classificatory Theory in Biology.Sabina Leonelli - 2013 - Biological Theory 7 (4):338-345.details
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Bio-ontologies as tools for integration in biology.Sabina Leonelli - 2008 - Biological Theory 3 (1):7-11.details
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“Just one animal among many?” Existential phenomenology, ethics, and stem cell research.Norman K. Swazo - 2010 - Theoretical Medicine and Bioethics 31 (3):197-224.details
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From parts to mechanisms: research heuristics for addressing heterogeneity in cancer genetics.William Bechtel - 2019 - History and Philosophy of the Life Sciences 41 (3):27.details
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Using the hierarchy of biological ontologies to identify mechanisms in flat networks.William Bechtel - 2017 - Biology and Philosophy 32 (5):627-649.details
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Limitations of Trans‐Species Inferences: The Case of Spatial‐Numerical Associations in Chicks and Humans.Katarzyna Patro & Hans-Christoph Nuerk - 2017 - Cognitive Science:2267-2274.details
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Axiomatisation of general concept inclusions from finite interpretations.D. Borchmann, F. Distel & F. Kriegel - 2016 - Journal of Applied Non-Classical Logics 26 (1):1-46.details
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Interdisciplinary Collaboration in Philosophy.Andrew Higgins & Alexis Dyschkant - 2014 - Metaphilosophy 45 (3):372-398.details
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