Results for 'Cathy Wu'

41 found
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  1.  26
    TGF-Beta Signaling Proteins and the Protein Ontology.Arighi Cecilia, Liu Hongfang, Natale Darren, Barker Winona, Drabkin Harold, Blake Judith, Barry Smith & Wu Cathy - 2009 - BMC Bioinformatics 10 (Suppl 5):S3.
    The Protein Ontology (PRO) is designed as a formal and principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from a classification of proteins on the basis of evolutionary relationships at the homeomorphic level to the representation of the multiple protein forms of a gene, including those resulting from alternative splicing, cleavage and/or posttranslational modifications. Focusing specifically on the TGF-beta signaling proteins, we describe the building, curation, usage and dissemination of PRO. PRO provides a framework (...)
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  2.  62
    Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.Cecilia Arighi, Veronica Shamovsky, Anna Maria Masci, Alan Ruttenberg, Barry Smith, Darren Natale, Cathy Wu & Peter D’Eustachio - 2015 - PLoS ONE 10 (4):e0122978.
    The Protein Ontology (PRO) provides terms for and supports annotation of species-specific protein complexes in an ontology framework that relates them both to their components and to species-independent families of complexes. Comprehensive curation of experimentally known forms and annotations thereof is expected to expose discrepancies, differences, and gaps in our knowledge. We have annotated the early events of innate immune signaling mediated by Toll-Like Receptor 3 and 4 complexes in human, mouse, and chicken. The resulting ontology and annotation data set (...)
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  3. The Protein Ontology: A Structured Representation of Protein Forms and Complexes.Darren Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang & Cathy H. Wu - 2011 - Nucleic Acids Research 39 (1):D539-D545.
    The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of protein (...)
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  4.  28
    The Representation of Protein Complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.
    Representing species-specific proteins and protein complexes in ontologies that are both human and machine-readable facilitates the retrieval, analysis, and interpretation of genome-scale data sets. Although existing protin-centric informatics resources provide the biomedical research community with well-curated compendia of protein sequence and structure, these resources lack formal ontological representations of the relationships among the proteins themselves. The Protein Ontology (PRO) Consortium is filling this informatics resource gap by developing ontological representations and relationships among proteins and their variants and modified forms. Because (...)
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  5. Experts and Deviants: The Story of Agentive Control.Wayne Wu - 2016 - Philosophy and Phenomenological Research 92 (2):101-26.
    This essay argues that current theories of action fail to explain agentive control because they have left out a psychological capacity central to control: attention. This makes it impossible to give a complete account of the mental antecedents that generate action. By investigating attention, and in particular the intention-attention nexus, we can characterize the functional role of intention in an illuminating way, explicate agentive control so that we have a uniform explanation of basic cases of causal deviance in action as (...)
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  6. Against Division: Consciousness, Information and the Visual Streams.Wayne Wu - 2014 - Mind and Language 29 (4):383-406.
    Milner and Goodale's influential account of the primate cortical visual streams involves a division of consciousness between them, for it is the ventral stream that has the responsibility for visual consciousness. Hence, the dorsal visual stream is a ‘zombie’ stream. In this article, I argue that certain information carried by the dorsal stream likely plays a central role in the egocentric spatial content of experience, especially the experience of visual spatial constancy. Thus, the dorsal stream contributes to a pervasive feature (...)
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  7. The Case for Zombie Agency.Wayne Wu - 2013 - Mind 122 (485):217-230.
    In response to Mole 2009, I present an argument for zombie action. The crucial question is not whether but rather to what extent we are zombie agents. I argue that current evidence supports only minimal zombie agency.
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  8. Explaining Schizophrenia: Auditory Verbal Hallucination and Self-Monitoring.Wayne Wu - 2012 - Mind and Language 27 (1):86-107.
    Do self-monitoring accounts, a dominant account of the positive symptoms, explain auditory verbal hallucination (AVH)? In this essay, I argue that the account fails to answer many crucial questions any explanation of AVH must address. Where the account provides a plausible answer, I make a case for an alternative explanation: AVH is not the result of a failed control mechanism, namely failed self-monitoring, but the persistent automaticity of auditory experience of a voice. The argument emphasizes the importance of careful examination (...)
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  9. Attention as Selection for Action.Wayne Wu - 2011 - In Christopher Mole, Declan Smithies & Wayne Wu (eds.), Attention: Philosophical and Psychological Essays. Oxford University Press. pp. 97--116.
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  10. Shaking Up the Mind’s Ground Floor: The Cognitive Penetration of Visual Attention.Wayne Wu - 2017 - Journal of Philosophy 114 (1):5-32.
    In this paper, I argue that visual attention is cognitively penetrated by intention. I present a detailed account of attention and its neural basis, drawing on a recent computational model of neural modulation during attention: divisive normalization. I argue that intention shifts computations during divisive normalization. The epistemic consequences of attentional bias are discussed.
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  11. Mental Action and the Threat of Automaticity.Wayne Wu - 2013 - In Andy Clark, Julian Kiverstein & Tillman Vierkant (eds.), Decomposing the Will. Oxford University Press. pp. 244-61.
    This paper considers the connection between automaticity, control and agency. Indeed, recent philosophical and psychological works play up the incompatibility of automaticity and agency. Specifically, there is a threat of automaticity, for automaticity eliminates agency. Such conclusions stem from a tension between two thoughts: that automaticity pervades agency and yet automaticity rules out control. I provide an analysis of the notions of automaticity and control that maintains a simple connection: automaticity entails the absence of control. An appropriate analysis, however, shows (...)
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  12. The Conscious Brain: How Attention Engenders Experience, by Jesse Prinz.Wayne Wu - 2013 - Mind 122 (488):1174-1180.
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  13. Being in the Workspace, From a Neural Point of View: Comments on Peter Carruthers, 'On Central Cognition'.Wayne Wu - 2014 - Philosophical Studies 170 (1):163-174.
    In his rich and provocative paper, Peter Carruthers announces two related theses: (a) a positive thesis that “central cognition is sensory based, depending on the activation and deployment of sensory images of various sorts” (Carruthers 2013) and (b) a negative thesis that the “central mind does not contain any workspace within which goals, decisions, intentions, or non-sensory judgments can be active” (Carruthers 2013). These are striking claims suggesting that a natural view about cognition, namely that explicit theoretical reasoning involves direct (...)
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  14. Perplexities of Consciousness, by Eric Schwitzgebel. [REVIEW]Sebastian Watzl & Wayne Wu - 2012 - Mind 121 (482):524-529.
    In this review of Eric Schwitzgebel's "Perplexities of Consciousness", we discuss the book's arguments in light of the role of attention in introspection.
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  15. Is Inner Speech the Basis of Auditory Verbal Hallucination in Schizophrenia?Wayne Wu & Raymond Cho - 2014 - Frontiers in Psychiatry 14:1-3.
    We respond to Moseley and Wilkinson's defense of inner speech models of AVH.
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  16.  54
    The Relationship of Ethical Decision-Making to Business Ethics and Performance in Taiwan.Chen-Fong Wu - 2002 - Journal of Business Ethics 35 (3):163-176.
    This paper examines the relationship of ethical decision-making by individuals to corporate business ethics and organizational performance of three groups: SMEs, Outstanding SMEs and Large Enterprises, in order to provide a reference for Taiwanese entrepreneurs to practice better business ethics. The survey method involved random sampling of 132 enterprises within three groups. Some 524 out of 1320 questionnaires were valid. The survey results demonstrated that ethical decision-making by individuals, corporate business ethics and organizational performance are highly related. In summary, then, (...)
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  17.  92
    The Development of Non-Coding RNA Ontology.Jingshan Huang, Karen Eilbeck, Barry Smith, Judith Blake, Deijing Dou, Weili Huang, Darren Natale, Alan Ruttenberg, Jun Huan, Michael Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison Strachan, Nisansa de Silva & Mohan Vamsi Kasukurthi - 2016 - International Journal of Data Mining and Bioinformatics 15 (3):214--232.
    Identification of non-coding RNAs (ncRNAs) has been significantly improved over the past decade. On the other hand, semantic annotation of ncRNA data is facing critical challenges due to the lack of a comprehensive ontology to serve as common data elements and data exchange standards in the field. We developed the Non-Coding RNA Ontology (NCRO) to handle this situation. By providing a formally defined ncRNA controlled vocabulary, the NCRO aims to fill a specific and highly needed niche in semantic annotation of (...)
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  18.  40
    Derrida's Open and Its Closure: The Aporia of Différance and the Only Logic of Thinking.Mengxue Wu - 2018 - Language, Literature, Interdisciplinary Studies 2 (1):76-98.
    Derrida’s thought on “trace,” “différance,” “writing,” and “supplement” is always thought the breaking of logocentrism, the essence, the positive meaning, and the closure of the metaphysics of presence; this thinking is accordingly regarded the thinking with the fundamental structure of difference and openness. By tracking back to Saussure, Husserl and Levinas, this fundamental difference breaks the myth of ideal meaning as well as the illusion of the absolute open; its lack of ideality and absoluteness contains the fundamental difference within itself (...)
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  19. Symbiont Consciousness: Sociocultural Embodied Augmentation of Humanity.Anthony Faiola, Preethi Srinivas, Rebecca Finch & Zhengxiao Wu - manuscript
    The psychology of consciousness as explained by Vygotsky is the ability of one to focus on the inner state of being. Vygotsky’s proposition of external tools redistributing mental and external processes into internalized acts lacks the concept of embodied mediational tools existing in the current world as computational artifacts extending or augmenting human capabilities. This paper proposes sociocultural embodied augmentation theory (SEAT) as a means to explain the impact of augmenting technologies on Vygotsky’s original notion of “psychological tool,” therefore initiating (...)
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  20. I Know You Are, But What Am I?: Anti-Individualism in the Development of Intellectual Humility and Wu-Wei.Brian Robinson & Mark Alfano - 2016 - Logos and Episteme 7 (4):435-459.
    Virtues are acquirable, so if intellectual humility is a virtue, it’s acquirable. But there is something deeply problematic—perhaps even paradoxical—about aiming to be intellectually humble. Drawing on Edward Slingerland’s analysis of the paradoxical virtue of wu-wei in Trying Not To Try (New York: Crown, 2014), we argue for an anti-individualistic conception of the trait, concluding that one’s intellectual humility depends upon the intellectual humility of others. Slingerland defines wu-wei as the “dynamic, effortless, and unselfconscious state of mind of a person (...)
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  21. On Ge Wu: Recovering the Way of the Great Learning.Huaiyu Wang - 2007 - Philosophy East and West 57 (2):204 - 226.
    By rethinking the meaning of a central idiom in the Great Learning, this essay intends to open up a new horizon for the hermeneutics of early Confucian thinking, which has little to do with metaphysics. Through a careful etymological study of ge wu and a dialogue between the Great Learning and Heidegger's phenomenology of human affection, I demonstrate the critical position of the human heart in early Chinese thinking. This new interpretation of early Confucian moral teachings also recovers an invigorating (...)
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  22. Embodied Demonstratives: A Reply to Wu.Christopher Mole - 2013 - Mind 122 (485):231-239.
    Although Wayne Wu correctly identifies a flaw in the way in which my 2009 article frames the debate about ‘zombie action’, he fails in his attempts to strengthen the case for thinking that our actions are under less conscious control than we usually imagine. His argument, like the arguments that my earlier paper addressed, can be blocked by allowing that an embodied demonstrative concept can contribute contents to a visual experience.
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  23.  86
    Attention: Philosophical and Psychological Essays, Edited by Christopher Mole, Declan Smithies, and Wayne Wu.Rocco J. Gennaro - 2014 - Mind 123 (490):623-628.
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  24.  23
    Kelleher, M. Theresa, Trans., The Journal of Wu Yubi: The Path to Sagehood. [REVIEW]Bryan Norden - 2015 - Dao: A Journal of Comparative Philosophy 14 (3):459-462.
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  25.  14
    无为的认知科学研究 [The Cognitive Science of Wu Wei].Bruya Brian - 2011 - Journal of Chinese Philosophy and Culture 2011 (9).
    认 知科学对 人类大脑和行为的研究,能有助我们更细致精妙地了解 早期中国思想中 “无为”这个常见的人类行为。早期中国典籍中对“无为”的含蓄描述,亦同时可以令我们更 明白当代认知心理学在理论上、预设上的限制,以及可行的出路。本文将沿着上述的两个方向发挥。文章的第一部分,根据 《庄子》里与“无 为 ”行为有关的主要篇章,为“无为”的内容分类。“无为”可分为 “完整性 ”(wholeness) 和“流畅性”(fluency) 两大范 畴,当中“完整性”可细分作“集中”(collection) 和 “排除”(shedding), “流畅性”则可细分作 “回应性”(responsiveness) 和 “轻易”(ease)。 本文的 主要预设是,《庄子》里描述的“无为 ”(甚至是其他典籍里的相关描述)是一种不受文化制约的人类行为。订立一套准确的分类方法,有助我们借此审视当代心 理学和认知科学的 文献中, 曾述及的类似行为。本文继而在已订立的分类方法上,与齐 克森米哈里(Csikszentmihalyi) 的“自 成目的体验 ”(autotelic experience) 观念相互比较,而“自 成目的体验 ” 观 念乃可通 向当代认知科学研究的桥梁。本文第三部分引用了不少 科学研究,以解释“无为”行为的各个面向。最后,本文对汉学研究如何可为推动认知科学和当代哲学发展作出贡献, 提出了建议。.
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  26. Dislocation, Not Dissociation: The Neuroanatomical Argument Against Visual Experience Driving Motor Action.Benjamin Kozuch - 2015 - Mind and Language 30 (5):572-602.
    Common sense suggests that visual consciousness is essential to skilled motor action, but Andy Clark—inspired by Milner and Goodale's dual visual systems theory—has appealed to a wide range of experimental dissociations to argue that such an assumption is false. Critics of Clark's argument contend that the content driving motor action is actually within subjects' experience, just not easily discovered. In this article, I argue that even if such content exists, it cannot be guiding motor action, since a review of current (...)
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  27. The Rehabilitation of Spontaneity: A New Approach in Philosophy of Action.Brian J. Bruya - 2010 - Philosophy East and West 60 (2):pp. 207-250.
    Scholars working in philosophy of action still struggle with the freedom/determinism dichotomy that stretches back to Hellenist philosophy and the metaphysics that gave rise to it. Although that metaphysics has been repudiated in current philosophy of mind and cognitive science, the dichotomy still haunts these fields. As such, action is understood as distinct from movement, or motion. In early China, under a very different metaphysical paradigm, no such distinction is made. Instead, a notion of self-caused movement, or spontaneity, is elaborated. (...)
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  28. Knowing Through the Body: The Daodejing and Dewey.Joel Krueger - 2009 - Journal of Chinese Philosophy 36 (1):31-52.
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  29.  98
    A Daoist Critique of Searle on Mind and Action.Joel Krueger - 2008 - In Bo Mou (ed.), Searle’s Philosophy and Chinese Philosophy: Constructive Engagement. Brill Academic Publishers. pp. 97-123.
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  30.  28
    The Epistemology of Mathematical Necessity.Cathy Legg - 2018 - In Peter Chapman, Gem Stapleton, Amirouche Moktefi, Sarah Perez-Kriz & Francesco Bellucci (eds.), Diagrammatic Representation and Inference10th International Conference, Diagrams 2018, Edinburgh, UK, June 18-22, 2018, Proceedings. Berlin: Springer-Verlag. pp. 810-813.
    It seems possible to know that a mathematical claim is necessarily true by inspecting a diagrammatic proof. Yet how does this work, given that human perception seems to just (as Hume assumed) ‘show us particular objects in front of us’? I draw on Peirce’s account of perception to answer this question. Peirce considered mathematics as experimental a science as physics. Drawing on an example, I highlight the existence of a primitive constraint or blocking function in our thinking which we might (...)
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  31.  55
    Brentano’s Lectures on Positivism (1893-1894) and His Relationship to Ernst Mach.Denis Fisette - forthcoming - In Friedrich Stadler (ed.), Ernst Mach - Life, Work, Influence. Berlin: Springer.
    This paper is mainly about Brentano’s commentaries on Ernst Mach in his lectures “Contemporary philosophical questions” which he held one year before he left Austria. I will first identify the main sources of Brentano’s interests in Comte’s and J. S. Mill’s positivism during his Würzburg period. The second section provides a short overview of Brentano’s 1893-1894 lectures and his criticism of Comte, Kirchhoff, and Mill. The next sections bear on Brentano’s criticism of Mach’s monism and Brentano’s argument against the reduction (...)
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  32. Cognitive Ontology in Flux: The Possibility of Protean Brains.Daniel D. Hutto, Anco Peeters & Miguel Segundo Ortin - 2017 - Philosophical Explorations 20 (2):209-223.
    This paper motivates taking seriously the possibility that brains are basically protean: that they make use of neural structures in inventive, on-the-fly improvisations to suit circumstance and context. Accordingly, we should not always expect cognition to divide into functionally stable neural parts and pieces. We begin by reviewing recent work in cognitive ontology that highlights the inadequacy of traditional neuroscientific approaches when it comes to divining the function and structure of cognition. Cathy J. Price and Karl J. Friston, and (...)
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  33.  51
    Does Mole’s Argument That Cognitive Processes Fail to Suffice for Attention Fail?Kranti Saran - 2018 - Ergo: An Open Access Journal of Philosophy 5:487-505.
    Is attention a cognitive process? I reconstruct and critically assess an argument first proposed by Christopher Mole that it cannot be so. Mole’s argument is influential because it creates theoretical space for a unifying analysis of attention at the subject level (though it does not entail it). Prominent philosophers working on attention such as Wayne Wu and Philipp Koralus explicitly endorse it, while Sebastian Watzl endorses a related version, this despite their differing theoretical commitments. I show that Mole’s argument is (...)
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  34. Quais São Os Vinculos Entre Aritmética E Linguagem ? Um Estudo Na Amazonia.Pierre Pica, Cathy Lemer, Véronique Izard & Stanislas Dehaene - 2005 - Revista de Estudos E Pesquisas 2 (1):199-236.
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  35. Hacking: The Performance of Technology? [REVIEW]Cathy Legg - 2005 - Techne 9 (2):151-154.
    The word “hacker” has an interesting double meaning: one vastly more widespread connotation of technological mischief, even criminality, and an original meaning amongst the tech savvy as a term of highest approbation. Both meanings, however, share the idea that hackers possess a superior ability to manipulate technology according to their will (and, as with God, this superior ability to exercise will is a source of both mystifying admiration and fear). This book mainly concerns itself with the former meaning. To Thomas (...)
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  36.  81
    Aspect as Eventuality Centering: Mandarin.Maria Bittner - manuscript
    Unlike English and Polish, Mandarin has no grammatical tense (TNS). Therefore, reference times are only introduced by temporal modifiers (contra Smith 1991/7, Wu 2003, Lin 2005, etc). In Mandarin discourse, the frequency of such modifiers (‘today’, ‘last night’, etc) is about the same (low) as in tensed languages (e.g. English, Polish) and plays a similarly marginal role in temporal discourse reference. This, however, does NOT mean that in tenseless Mandarin temporal relations between eventualities in discourse are in any way less (...)
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  37.  21
    Study on Logic Reasoning and Ideological Characteristic of “Equivalence of Life and Death” of Chuang-Tzu. Di Wu - 2017 - Theory Horizon 526 (6):46-51.
    The Concept of Life and Death of Chuang-tzu have inherited and developed Confucianism and Taoism thoughts, establishing Ontological foundation of "Life - Body", distinguishing the transcendental concept of "Dead Heart" and the empirical concept of "Death Body", as well as proposing the thought of "Equivalence of Life and Death" finally. The logic Reasoning of Chuang-tzu "Equivalence of Life and Death", start from constructing the equal status of "Life" and “Death" from ontological argument. Life and Death then are reduced to be (...)
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  38.  19
    Aristotelian Distributive Justice: Holism or Egalitarianism. Di Wu - 2017 - Journal of Huazhong University of Science and Technology(Social Science Edition), 31 (6):60-64.
    Different understanding on Aristotelian distributive justice results in two main factions: holism and egalitarianism. Dennis McKerlie, one of the representatives of holism, criticized Martha Nussbaum's interpretation as an egalitarian. McKerlie argued that Nussbaum did not attach enough importance to the Proportional equality and Aristotelian Common good, as well as a deviation in the understanding of the concept of distribution. The defense of egalitarianism is that Aristotle's emphasis on the rational equality of citizens and the ontological presupposition of primal equality show (...)
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  39.  15
    From “Modern Technology” Criticism to “Future-oriented” Responsibility Ethics: Hans Jonas's Theoretical construction of Responsibility Ethics. Di Wu - 2018 - Science Economy Society 36 (4):25-32.
    Hans Jonas 's responsibility ethics is an important achievement of modern technology criticism and ethical theory innovation. The maturity of Jonas's ethical thought has gone through three main stages, namely, the critique of modern technology, the reflection of traditional ethics and the construction of the " Future-oriented " Responsibility Ethics. Jonas's criticism of modern technology not only has a strong epochal character but also carries on the spirit of social criticism since Marx. His insight into the traditional ethics theory and (...)
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  40. Cartografía filosófico-política del ciberespacio: posturas extremas y moderadas.Lucas Emmanuel Misseri - 2015 - Cuadernos Del Sur. Filosofía (43-44):207-228.
    Information and communication technologies present new challenges for political theory and philosophy due to its large-scale and scope transformations. Their demands are reflected in institutional needs that cover a “cyber-political” space, i. e., a cluster of problems of the governance of the network of networks –Internet– that results in the formation of new institutions –e. g. ICANN. The question I try to answer here is: What characterizes cyberspace political discourses? The proposed hypothesis is that it is possible to interpret the (...)
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  41. The Impact and Residue of Cartesian Dualism: The Relevance of Cartesian Skepticism.Cathy Dobson - manuscript
    A concise review of skeptician in the Carterian model with a discussion of the reframing of the Cartesian paradigm by John McDowell in the 20th century.
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