Results for 'Kristin Smith-Crowe'

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  1. How to Study Animal Minds.Kristin Andrews - 2020 - Cambridge UK: Cambridge University Press.
    The birth of a new science is long, drawn out, and often fairly messy. Comparative psychology has its roots in Darwin’s Descent of Man, was fertilized in academic psychology departments, and has branched across the universities into departments of biology, anthropology, primatology, zoology, and philosophy. Both the insights and the failings of comparative psychology are making their way into contemporary discussions of artificial intelligence and machine learning (Chollett 2019; Lapuschkin et al. 2019; Watson 2019). It is the right time to (...)
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  2. Sam Harris and the Myth of Artificial Intelligence.Jobst Landgrebe & Barry Smith - 2023 - In Sandra Woien (ed.), Sam Harris: Critical Responses. Chicago: Carus Books. pp. 153-61.
    Sam Harris is a contemporary illustration of the difficulties standing in the way of coherent interdisciplinary thinking in an age where science and the humanities have drifted so far apart. We are here with Harris’s views on AI, and specifically with his view according to which, with the advance of AI, there will evolve a machine superintelligence with powers that far exceed those of the human mind. This he sees as something that is not merely possible, but rather a matter (...)
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  3. Do Apes Read Minds?: Toward a New Folk Psychology.Kristin Andrews - 2012 - MIT Press.
    Andrews argues for a pluralistic folk psychology that employs different kinds of practices and different kinds of cognitive tools (including personality trait attribution, stereotype activation, inductive reasoning about past behavior, and ...
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  4. The Animal Mind: An Introduction to the Philosophy of Animal Cognition.Kristin Andrews - 2014 - Routledge.
    The study of animal cognition raises profound questions about the minds of animals and philosophy of mind itself. Aristotle argued that humans are the only animal to laugh, but in recent experiments rats have also been shown to laugh. In other experiments, dogs have been shown to respond appropriately to over two hundred words in human language. In this introduction to the philosophy of animal minds Kristin Andrews introduces and assesses the essential topics, problems and debates as they cut (...)
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  5. (In)compatibilism.Kristin M. Mickelson - 2023 - In Joe Campbell, Kristin M. Mickelson & V. Alan White (eds.), Wiley-Blackwell: A Companion to Free Will. Wiley. pp. 58-83.
    The terms ‘compatibilism’ and ‘incompatibilism’ were introduced in the mid-20th century to name conflicting views about the logical relationship between the thesis of determinism and the thesis that someone has free will. These technical terms were originally introduced within a specific research paradigm, the classical analytic paradigm. This paradigm is now in its final stages of degeneration and few free-will theorists still work within it (i.e. using its methods, granting its substantive background assumptions, etc.). This chapter discusses how the ambiguity (...)
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  6. Free Will, Self‐Creation, and the Paradox of Moral Luck.Kristin M. Mickelson - 2019 - Midwest Studies in Philosophy 43 (1):224-256.
    *As mentioned in Peter Coy's NYT essay "When Being Good Is Just a Matter of Being Lucky" (2023) -/- ----- -/- How is the problem of free will related to the problem of moral luck? In this essay, I answer that question and outline a new solution to the paradox of moral luck, the source-paradox solution. This solution both explains why the paradox arises and why moral luck does not exist. To make my case, I highlight a few key connections (...)
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  7. Quantum sensing and quantum engineering: a strategy for acceleration via metascience.Charles Clark, Mayur Gosai, Terry Janssen, Melissa LaDuke, Jobst Landgrebe, Lawrence Pace & Barry Smith - 2023 - Proceedings of Spie: Quantum Sensing, Imaging, and Precision Metrology 12447.
    Research and engineering in the quantum domain involve long chains of activity involving theory development, hypothesis formation, experimentation, device prototyping, device testing, and many more. At each stage multiple paths become possible, and of the paths pursued, the majority will lead nowhere. Our quantum metascience approach provides a strategy which enables all stakeholders to gain an overview of those developments along these tracks, that are relevant to their specific concerns. It provides a controlled vocabulary, built out of terms that are (...)
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  8. The Zygote Argument is invalid: Now what?Kristin Mickelson - 2015 - Philosophical Studies 172 (11):2911-2929.
    This paper is based on the comments I gave to Alfred Mele regarding his original Zygote Argument during my presentation at a small workshop on manipulation arguments in Budapest back in 2012. After those comments, Mele changed the conclusion of his original Zygote Argument (OZA) from a positive, explanatory conclusion to a negative, non-explanatory conclusion--and, correspondingly, redefined 'incompatibilism' so that it would no longer refer in his work to the view that determinism precludes (undermines, eliminates, destroys, etc.) free will, but (...)
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  9. Introduction to Folk Psychology: Pluralistic Approaches.Kristin Andrews, Shannon Spaulding & Evan Westra - 2020 - Synthese 199 (1-2):1685-1700.
    This introduction to the topical collection, Folk Psychology: Pluralistic Approaches reviews the origins and basic theoretical tenets of the framework of pluralistic folk psychology. It places special emphasis on pluralism about the variety folk psychological strategies that underlie behavioral prediction and explanation beyond belief-desire attribution, and on the diverse range of social goals that folk psychological reasoning supports beyond prediction and explanation. Pluralism is not presented as a single theory or model of social cognition, but rather as a big-tent research (...)
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  10. The Folk Psychological Spiral: Explanation, Regulation, and Language.Kristin Andrews - 2015 - Southern Journal of Philosophy 53 (S1):50-67.
    The view that folk psychology is primarily mindreading beliefs and desires has come under challenge in recent years. I have argued that we also understand others in terms of individual properties such as personality traits and generalizations from past behavior, and in terms of group properties such as stereotypes and social norms (Andrews 2012). Others have also argued that propositional attitude attribution isn’t necessary for predicting others’ behavior, because this can be done in terms of taking Dennett’s Intentional Stance (Zawidzki (...)
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  11. Spinoza’s Monism I: Ruling Out Eternal-Durational Causation.Kristin Primus - 2023 - Archiv für Geschichte der Philosophie 105 (2):265-288.
    In this essay, I suggest that Spinoza acknowledges a distinction between formal reality that is infinite and timelessly eternal and formal reality that is non-infinite (i. e., finite or indefinite) and non-eternal (i. e., enduring). I also argue that if, in Spinoza’s system, only intelligible causation is genuine causation, then infinite, timelessly eternal formal reality cannot cause non-infinite, non-eternal formal reality. A denial of eternal-durational causation generates a puzzle, however: if no enduring thing – not even the sempiternal, indefinite individual (...)
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  12. The Soft-Line Solution to Pereboom's Four-Case Argument.Kristin Mickelson - 2010 - Australasian Journal of Philosophy 88 (4):595-617.
    Derk Pereboom's Four-Case Argument is among the most famous and resilient manipulation arguments against compatibilism. I contend that its resilience is not a function of the argument's soundness but, rather, the ill-gotten gain from an ambiguity in the description of the causal relations found in the argument's foundational case. I expose this crucial ambiguity and suggest that a dilemma faces anyone hoping to resolve it. After a thorough search for an interpretation which avoids both horns of this dilemma, I conclude (...)
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  13. How Not to Find Over-Imitation in Animals.Kristin Andrews & Jedediah W. P. Allen - 2024 - Human Development.
    While more species are being identified as cultural on a regular basis, stark differences between human and animal cultures remain. Humans are more richly cultural, with group-specific practices and social norms guiding almost every element of our lives. Furthermore, human culture is seen as cumulative, cooperative, and normative, in contrast to animal cultures. One hypothesis to explain these differences is grounded in the observation that human children across cultures appear to spontaneously over-imitate silly or causally irrelevant behaviors that they observe. (...)
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  14. Warranted Diagnosis.David Limbaugh, David Kasmier, Werner Ceusters & Barry Smith - 2019 - In David Limbaugh, David Kasmier, Werner Ceusters & Barry Smith (eds.), Proceedings of the International Conference on Biomedical Ontology (ICBO), Buffalo, NY. Buffalo: pp. 1-10.
    A diagnostic process is an investigative process that takes a clinical picture as input and outputs a diagnosis. We propose a method for distinguishing diagnoses that are warranted from those that are not, based on the cognitive processes of which they are the outputs. Processes designed and vetted to reliably produce correct diagnoses will output what we shall call ‘warranted diagnoses’. The latter are diagnoses that should be trusted even if they later turn out to have been wrong. Our work (...)
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  15. An Ontological Approach to Representing the Product Life Cycle.J. Neil Otte, Dimitris Kiritsi, Munira Mohd Ali, Ruoyu Yang, Binbin Zhang, Ron Rudnicki, Rahul Rai & Barry Smith - 2019 - Applied ontology 14 (2):1-19.
    The ability to access and share data is key to optimizing and streamlining any industrial production process. Unfortunately, the manufacturing industry is stymied by a lack of interoperability among the systems by which data are produced and managed, and this is true both within and across organizations. In this paper, we describe our work to address this problem through the creation of a suite of modular ontologies representing the product life cycle and its successive phases, from design to end of (...)
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  16. If Skill is Normative, Then Norms are Everywhere.Kristin Andrews & Evan Westra - 2021 - Analyse & Kritik 43 (1):203-218.
    Birch sketches out an ingenious account of how the psychology of social norms emerged from individual-level norms of skill. We suggest that these individual-level norms of skill are likely to be much more widespread than Birch suggests, extending deeper into the hominid lineage, across modern great ape species, all the way to distantly related creatures like honeybees. This suggests that there would have been multiple opportunities for social norms to emerge from skill norms in human prehistory.
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  17. Spinoza’s Monism II: A Proposal.Kristin Primus - 2023 - Archiv für Geschichte der Philosophie 105 (3):444-469.
    An old question in Spinoza scholarship is how finite, non-eternal things transitively caused by other finite, non-eternal things (i. e., the entities described in propositions like E1p28) are caused by the infinite, eternal substance, given that what follows either directly or indirectly from the divine nature is infinite and eternal (E1p21–23). In “Spinoza’s Monism I,” “Spinoza’s Monism I,” in the previous issue of this journal. I pointed out that most commentators answer this question by invoking entities that are indefinite and (...)
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  18. Chimpanzee Rights: The Philosophers' Brief.Kristin Andrews, Gary Comstock, G. K. D. Crozier, Sue Donaldson, Andrew Fenton, Tyler John, L. Syd M. Johnson, Robert Jones, Will Kymlicka, Letitia Meynell, Nathan Nobis, David M. Pena-Guzman & Jeff Sebo - 2018 - London: Routledge.
    In December 2013, the Nonhuman Rights Project (NhRP) filed a petition for a common law writ of habeas corpus in the New York State Supreme Court on behalf of Tommy, a chimpanzee living alone in a cage in a shed in rural New York (Barlow, 2017). Under animal welfare laws, Tommy’s owners, the Laverys, were doing nothing illegal by keeping him in those conditions. Nonetheless, the NhRP argued that given the cognitive, social, and emotional capacities of chimpanzees, Tommy’s confinement constituted (...)
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  19. Spinoza’s ‘Infinite Modes’ Reconsidered.Kristin Primus - 2019 - Journal of Modern Philosophy 1 (1):1-29.
    My two principal aims in this essay are interconnected. One aim is to provide a new interpretation of the ‘infinite modes’ in Spinoza’s Ethics. I argue that for Spinoza, God, conceived as the one infinite and eternal substance, is not to be understood as causing two kinds of modes, some infinite and eternal and the rest finite and non-eternal. That there cannot be such a bifurcation of divine effects is what I take the ‘infinite mode’ propositions, E1p21–23, to establish; E1p21–23 (...)
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  20. The Infectious Disease Ontology in the Age of COVID-19.Shane Babcock, Lindsay G. Cowell, John Beverley & Barry Smith - 2021 - Journal of Biomedical Semantics 12 (13).
    The Infectious Disease Ontology (IDO) is a suite of interoperable ontology modules that aims to provide coverage of all aspects of the infectious disease domain, including biomedical research, clinical care, and public health. IDO Core is designed to be a disease and pathogen neutral ontology, covering just those types of entities and relations that are relevant to infectious diseases generally. IDO Core is then extended by a collection of ontology modules focusing on specific diseases and pathogens. In this paper we (...)
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  21. The Mystery of Moral Perception.Daniel Crow - 2016 - Journal of Moral Philosophy 13 (2):187-210.
    _ Source: _Page Count 24 Accounts of non-naturalist moral perception have been advertised as an empiricist-friendly epistemological alternative to moral rationalism. I argue that these accounts of moral perception conceal a core commitment of rationalism—to substantive a priori justification—and embody its most objectionable feature—namely, “mysteriousness.” Thus, accounts of non-naturalist moral perception do not amount to an interesting alternative to moral rationalism.
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  22. Ape Autonomy? Social norms and moral agency in other species.Kristin Andrews - 2013 - In Petrus Klaus & Wild Markus (eds.), Philosophical Perspectives on Animals: Mind, Ethics, Morals. Transcript. pp. 173-196.
    Once upon a time, not too long ago, the question about apes and ethics had to do with moral standing—do apes have interests or rights that humans ought to respect? Given the fifty years of research on great ape cognition, life history, social organization, and behavior, the answer to that question seems obvious. Apes have emotions and projects, they can be harmed, and they have important social relationships.
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  23. CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis.Oliver He, John Beverley, Gilbert S. Omenn, Barry Smith, Brian Athey, Luonan Chen, Xiaolin Yang, Junguk Hur, Hsin-hui Huang, Anthony Huffman, Yingtong Liu, Yang Wang, Edison Ong & Hong Yu - 2020 - Scientific Data 181 (7):5.
    Ontologies, as the term is used in informatics, are structured vocabularies comprised of human- and computer-interpretable terms and relations that represent entities and relationships. Within informatics fields, ontologies play an important role in knowledge and data standardization, representation, integra- tion, sharing and analysis. They have also become a foundation of artificial intelligence (AI) research. In what follows, we outline the Coronavirus Infectious Disease Ontology (CIDO), which covers multiple areas in the domain of coronavirus diseases, including etiology, transmission, epidemiology, pathogenesis, diagnosis, (...)
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  24. The Manipulation Argument.Kristin Mickelson - 2017 - In Kevin Timpe, Meghan Griffith & Neil Levy (eds.), Routledge Companion to Free Will. New York: Routledge.
    "The Manipulation Argument has recently taken center stage in the free-will debate, yet little else can be said of this newcomer that is uncontroversial. At present, even the most fundamental elements of the Manipulation Argument--its structure, conclusion, and target audience--are a matter of dispute. As such, we cannot begin, as we ideally would, with a simple and relatively uncontroversial overview of the argument. Instead, clarifying the debate over the basic structure and general conclusion of the Manipulation Argument will be our (...)
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  25. Chimpanzee Theory of Mind: Looking in All the Wrong Places?Kristin Andrews - 2005 - Mind and Language 20 (5):521-536.
    I respond to an argument presented by Daniel Povinelli and Jennifer Vonk that the current generation of experiments on chimpanzee theory of mind cannot decide whether chimpanzees have the ability to reason about mental states. I argue that Povinelli and Vonk's proposed experiment is subject to their own criticisms and that there should be a more radical shift away from experiments that ask subjects to predict behavior. Further, I argue that Povinelli and Vonk's theoretical commitments should lead them to accept (...)
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  26. Scientia intuitiva in the Ethics.Kristin Primus - 2017 - In Primus Kristin (ed.), The Critical Guide to Spinoza's Ethics. Cambridge University Press. pp. 169-186.
    **For my more recent views of the third kind of cognition, see my "Finding Oneself in God"** -/- Abstract: Cognition of the third kind, or scientia intuitiva, is supposed to secure beatitudo, or virtue itself (E5p42). But what is scientia intuitiva, and how is it different from (and superior to) reason? I suggest a new answer to this old and vexing question at the core of Spinoza’s project in the Ethics. On my view, Spinoza’s scientia intuitiva resembles Descartes’s scientia more (...)
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  27. Reflective Knowledge.Kristin Primus - 2021 - In Yitzhak Y. Melamed (ed.), A Companion to Spinoza. Hoboken, NJ: Wiley. pp. 265–275.
    This chapter describes Spinoza's obscure “ideas of ideas” doctrine and his claim that “as soon as one knows something, one knows that one knows it, and simultaneously knows that one knows that one knows, and so on, to infinity”. Spinoza holds that the human mind is a representation of the body: the “objectum of the idea constituting the human mind” is the human body. Suppose ideas are essentially self‐reflexive, and that this reflexive awareness, the “idea of the idea,” makes the (...)
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  28. Beyond Anthropomorphism: Attributing Psychological Properties to Animals.Kristin Andrews - 2011 - In Tom L. Beauchamp & R. G. Frey (eds.), Oxford Handbook of Animal Ethics. Oup Usa. pp. 469--494.
    In the context of animal cognitive research, anthropomorphism is defined as the attribution of uniquely human mental characteristics to animals. Those who worry about anthropomorphism in research, however, are immediately confronted with the question of which properties are uniquely human. One might think that researchers must first hypothesize the existence of a feature in an animal before they can, with warrant, claim that the property is uniquely human. But all too often, this isn't the approach. Rather, there is an a (...)
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  29. The Zygote Argument Is Still Invalid: So What?Kristin M. Mickelson - 2020 - Philosophia 49 (2):705-722.
    In “The Zygote Argument is Invalid: Now What?” (2015), Kristin Mickelson published an objection to the Zygote Argument that she first presented in 2012 as workshop comments on a draft of Mele's "Manipulation, Moral Responsibility, and Bullet-Biting" (2013). Assuming that the phrase "determinism precludes free will" means something like determinism-related causal factors are what prevent people from acting freely when determinism is true, Mele's original Zygote Argument was invalid. At the workshop, Mickelson presented Mele with two options to address (...)
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  30. Mental Capabilities.Eric Merrell, David Limbaugh, Alex Anderson & Barry Smith - 2019 - In David Kasmier, David Limbaugh & Barry Smith (eds.), Proceedings of the International Conference on Biomedical Ontology (ICBO), University at Buffalo, NY.
    We propose capability as a universal or type intermediate between function and disposition. A capability is, broadly speaking, a disposition that is of a type whose instances can be evaluated on the basis of how well they are realized. A function, on the view we are proposing, is a capability the possession of which is the rationale for the existence of its bearer. To say for example that a water pump has the function to pump water is to say that (...)
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  31. Adam Smith's political philosophy: the invisible hand and spontaneous order.Craig Smith - 2006 - New York: Routledge.
    When Adam Smith published his celebrated writings on economics and moral philosophy he famously referred to the operation of an invisible hand. Adam Smith's Political Philosophy makes visible the invisible hand by examining its significance in Smith's political philosophy and relating it to similar concepts used by other philosophers, revealing a distinctive approach to social theory that stresses the significance of the unintended consequences of human action. This book introduces greater conceptual clarity to the discussion of the (...)
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  32. A critique of Vihvelin’s Three-fold Classification.Kristin Mickelson - 2015 - Canadian Journal of Philosophy 45 (1):85-99.
    In this essay, I argue for the rejection of Vihvelin's ‘Three-fold Classification’ , a nonstandard taxonomy of free-will compatibilism, incompatibilism, and impossibilism. Vihvelin is right that the standard taxonomy of these views is inadequate, and that a new taxonomy is needed to clarify the free-will debate. Significantly, Vihvelin notes that the standard formal definition of ‘incompatibilism’ does not capture the historically popular view that deterministic laws pose a threat to free will. Vihvelin's proposed solution is to redefine ‘incompatibilism.’ However, Vihvelin's (...)
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  33. Life in a Cage.Kristin Andrews - 2017 - The Philosophers' Magazine 76:72-77.
    Personhood is not a redundant category, but a social cluster kind. On this view, chimpanzees have their own kind of personhood profile. Seeing that chimpanzees have a personhood profile allows us to argue that chimpanzees like Tommy are individuals who deserve rights under the law. If chimpanzee personhood is a matter of public policy that needs to be decided by society, then learning more about the person profiles of chimpanzees will be essential in making this case. As the public learns (...)
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  34. More Than Provocative, Less Than Scientific: A Commentary on the Editorial Decision to Publish Cofnas (2020).Rasmus Rosenberg Larsen, Helen De Cruz, Jonathan Kaplan, Agustín Fuentes, Massimo Pigliucci, Jonathan Marks, Mark Alfano, David Smith & Lauren Schroeder - manuscript
    We are addressing this letter to the editors of Philosophical Psychology after reading an article they decided to publish in the recent vol. 33, issue 1. The article is by Nathan Cofnas and is entitled “Research on group differences in intelligence: A defense of free inquiry” (2020). The purpose of our letter is not to invite Cofnas’s contribution into a broader dialogue, but to respectfully voice our concerns about the decision to publish the manuscript, which, in our opinion, fails to (...)
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  35. Telling Stories without Words.Kristin Andrews - 2009 - Journal of Consciousness Studies 16 (6-8):6-8.
    In this review article of Dan Hutto's bok Folk Psychological Narratives: The Sociocultural Basis of Understanding Reasons, I argue that we can take a functional approach to FP that identifies it with the practice of explaining behaviour -- that is, we can understand folk psychology as having the purpose of explaining behaviour and promoting social cohesion by making others’ behaviour comprehensible, without thinking that this ability must be limited to those with linguistic abilities. One reason for thinking that language must (...)
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  36.  87
    Beyond Anthropomorphism: Attributing Psychological Properties to Animals.Kristin Andrews - 2011 - In Beauchamp Tom & Frey R. G. (eds.), The Oxford Handbook of Animal Ethics,. Oxford University Press. pp. 469-494.
    In the context of animal cognitive research, anthropomorphism is defined as the attribution of uniquely human mental characteristics to animals. Those who worry about anthropomorphism in research, however, are immediately confronted with the question of which properties are uniquely human. One might think that researchers must first hypothesize the existence of a feature in an animal before they can, with warrant, claim that the property is uniquely human. But all too often, this isn't the approach. Rather, there is an a (...)
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  37. Paternalism and Equality.Kristin Voigt - 2015 - In Thomas Schramme (ed.), New Perspectives on Paternalism and Health Care. Cham: Springer Verlag.
    Paternalistic interventions restrict individuals’ liberty or autonomy so as to guide their decisions towards options that are more beneficial for them than the ones they would choose in the absence of such interventions. Although some philosophers have emphasised that there is a case for justifiable paternalism in certain circumstances, much of contemporary moral and political philosophy works from a strong presumption against paternalistic interventions. However, Richard Arneson has argued that there are egalitarian reasons that support the case for paternalism: paternalistic (...)
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  38. Biography of Barry Smith.Sandra Smith - 2017 - Cosmos + Taxis 4 (4):4-5.
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  39. Enriching the Functionally Graded Materials (FGM) Ontology for digital manufacturing.Munira Mohd Ali, Ruoyu Yang, Binbin Zhang, Francesco Furini, Rahul Rai, J. Neil Otte & Barry Smith - 2021 - International Journal of Production Research 59 (18):5540-5557.
    Functionally graded materials (FGMs) have been used in many different kinds of applications in recent years and have attracted significant research attention. However, we do not yet have a commonly accepted way of representing the various aspects of FGMs. Lack of standardised vocabulary creates obstacles to the extraction of useful information relating to pertinent aspects of different applications. A standard resource is needed for describing various elements of FGMs, including existing applications, manufacturing techniques, and material characteristics. This motivated the creation (...)
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  40. Measuring the Consequences of Rules: Holly M. Smith.Holly M. Smith - 2010 - Utilitas 22 (4):413-433.
    Recently two distinct forms of rule-utilitarianism have been introduced that differ on how to measure the consequences of rules. Brad Hooker advocates fixed-rate rule-utilitarianism, while Michael Ridge advocates variable-rate rule-utilitarianism. I argue that both of these are inferior to a new proposal, optimum-rate rule-utilitarianism. According to optimum-rate rule-utilitarianism, an ideal code is the code whose optimum acceptance level is no lower than that of any alternative code. I then argue that all three forms of rule-utilitarianism fall prey to two fatal (...)
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  41. Reflective Knowledge.Kristin Primus - 2021 - In Yitzhak Y. Melamed (ed.), Blackwell Companion to Spinoza. Hoboken, NJ: Blackwell. pp. 265-275.
    In this chapter, I first turn to Spinoza’s obscure “ideas of ideas” doctrine and his claim that “as soon as one knows something, one knows that one knows it, and simultaneously knows that one knows that one knows, and so on, to infinity” (E2p21s). On my view, Spinoza, like Descartes, holds that a given idea can be conceived either in terms of what it represents or as an act of thinking: E2p7 (where Spinoza presents his doctrine of the “parallelism” of (...)
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  42. Publications by Barry Smith.Barry Smith - 2017 - Cosmos + Taxis 4 (4):67-104.
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  43. Quality Control for Terms and Definitions in Ontologies and Taxonomies.Jacob Köhler, Katherine Munn, Alexander Rüegg, Andre Skusa & Barry Smith - 2006 - BMC Bioinformatics 7 (212):1-12.
    Background: Ontologies and taxonomies are among the most important computational resources for molecular biology and bioinformatics. A series of recent papers has shown that the Gene Ontology (GO), the most prominent taxonomic resource in these fields, is marked by flaws of certain characteristic types, which flow from a failure to address basic ontological principles. As yet, no methods have been proposed which would allow ontology curators to pinpoint flawed terms or definitions in ontologies in a systematic way. Results: We present (...)
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  44. OHMI: The Ontology of Host-Microbiome Interactions.Yongqun He, Haihe Wang, Jie Zheng, Daniel P. Beiting, Anna Maria Masci, Hong Yu, Kaiyong Liu, Jianmin Wu, Jeffrey L. Curtis, Barry Smith, Alexander V. Alekseyenko & Jihad S. Obeid - 2019 - Journal of Biomedical Semantics 10 (1):1-14.
    Host-microbiome interactions (HMIs) are critical for the modulation of biological processes and are associated with several diseases, and extensive HMI studies have generated large amounts of data. We propose that the logical representation of the knowledge derived from these data and the standardized representation of experimental variables and processes can foster integration of data and reproducibility of experiments and thereby further HMI knowledge discovery. A community-based Ontology of Host-Microbiome Interactions (OHMI) was developed following the OBO Foundry principles. OHMI leverages established (...)
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  45. Critter psychology.Kristin Andrews - 2007 - In Daniel D. Hutto & Matthew Ratcliffe (eds.), Folk Psychology Re-Assessed. New York: Springer Press. pp. 191--209.
    When we ask the question whether animals have their own folk psychology, we’re asking whether any other species has a commonsense conception of psychological phenomenon. Different versions of this question have been discussed over the past 25 years, but no clear answer has emerged. Perhaps one reason for this lack of progress is that we don’t clearly understand the question. I defend a two-fold view of folk psychology that takes as central the capacity to engage in some folk psychological practices (...)
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  46. What particulars are referred to in EHR data? A case study in integrating referent tracking into an electronic health record application.Ron Rudnicki, Werner Ceusters, Shaid Manzoo & Barry Smith - 2007 - In Proceedings of the Annual Symposium of the American Medical Informatics Association. AMIA. pp. 630-634.
    Referent Tracking (RT) advocates the use of instance unique identifiers to refer to the entities comprising the subject matter of patient health records. RT promises many benefits to those who use health record data to improve patient care. To further the adoption of the paradigm we provide an illustration of how data from an EHR application needs to be decomposed in order to make it accord with the tenets of RT. We describe the ontological principles on which this decomposition is (...)
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  47. The role of ontologies for sustainable, semantically interoperable and trustworthy EHR solutions.Bernd Blobel, Dipak Kalra, Marc Koehn, Ken Lunn, Peter Pharow, Pekka Ruotsalainen, Stefan Schulz & Barry Smith - 2009 - Studies in Health Technology and Informatics 150:953-957.
    As health systems around the world turn towards highly distributed, specialized and cooperative structures to increase quality and safety of care as well as efficiency and efficacy of delivery processes, there is a growing need for supporting communication and collaboration of all parties involved with advanced ICT solutions. The Electronic Health Record (EHR) provides the information platform which is maturing towards the eHealth core application. To meet the requirements for sustainable, semantically interoperable, and trustworthy EHR solutions, different standards and different (...)
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  48. Touching The Boundary Mark: Aging, Habit, And Temporality In Beauvoir’s La Vieillesse.Kristin Rodier - 2013 - Janus Head 13 (1):35-57.
    This paper explores the unique phenomenology of habit and temporality put forth in Beauvoir’s La Vieillesse. I situate her understanding of temporality in relation to her early work Pyrrhus and Cinéas. I extract her notion of a boundary marked future that decreases anticipation for the future and thus rigidifies habits. In the final section I appropriate the notion of a boundary mark for a cultural phenomenology where we understand boundary marks as constituted by our understandings of ourselves in time and (...)
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  49. A semantic approach for knowledge capture of microRNA-target gene interactions.Jingshan Huang, Fernando Gutierrez, Dejing Dou, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Barry Smith, Yu Lin, Xiaowei Wang & Zixing Liu - 2015 - In Jingshan Huang, Fernando Gutierrez, Dejing Dou, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Barry Smith, Yu Lin, Xiaowei Wang & Zixing Liu (eds.), IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2015),. pp. 975-982.
    Research has indicated that microRNAs (miRNAs), a special class of non-coding RNAs (ncRNAs), can perform important roles in different biological and pathological processes. miRNAs’ functions are realized by regulating their respective target genes (targets). It is thus critical to identify and analyze miRNA-target interactions for a better understanding and delineation of miRNAs’ functions. However, conventional knowledge discovery and acquisition methods have many limitations. Fortunately, semantic technologies that are based on domain ontologies can render great assistance in this regard. In our (...)
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  50. Confronting Language, Representation, and Belief: A Limited Defense of Mental Continuity.Kristin Andrews & Ljiljana Radenovic - 2012 - In Shackelford Todd & Vonk Jennifer (eds.), The Oxford Handbook of Comparative Evolutionary Psychology. Oxford University Press. pp. 39-60.
    According to the mental continuity claim (MCC), human mental faculties are physical and beneficial to human survival, so they must have evolved gradually from ancestral forms and we should expect to see their precursors across species. Materialism of mind coupled with Darwin’s evolutionary theory leads directly to such claims and even today arguments for animal mental properties are often presented with the MCC as a premise. However, the MCC has been often challenged among contemporary scholars. It is usually argued that (...)
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